RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 HGFP14210 728 aa16.03■□□□□ 0.16
CCDC28A-202ENST00000611852 ZNF37AP17032 561 aaPredicted RBP16.03■□□□□ 0.16
CCDC28A-202ENST00000611852 CSTF2P33240 577 aaKnown RBP eCLIP16.03■□□□□ 0.16
CCDC28A-202ENST00000611852 KPNA2P52292 529 aaKnown RBP16.03■□□□□ 0.16
CCDC28A-202ENST00000611852 ZNF460Q14592 562 aa16.03■□□□□ 0.16
CCDC28A-202ENST00000611852 CACHD1Q5VU97 1274 aa16.03■□□□□ 0.16
CCDC28A-202ENST00000611852 FOXR1Q6PIV2 292 aa16.03■□□□□ 0.16
CCDC28A-202ENST00000611852 MYO1HQ8N1T3 1032 aa16.03■□□□□ 0.16
CCDC28A-202ENST00000611852 FBXO39Q8N4B4 442 aa16.03■□□□□ 0.16
CCDC28A-202ENST00000611852 LINC01555Q8NAE3 123 aa16.03■□□□□ 0.16
CCDC28A-202ENST00000611852 FBXO15Q8NCQ5 510 aaPredicted RBP16.03■□□□□ 0.16
CCDC28A-202ENST00000611852 AGBL5Q8NDL9 886 aa16.03■□□□□ 0.16
CCDC28A-202ENST00000611852 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.03■□□□□ 0.16
CCDC28A-202ENST00000611852 MRRFQ96E11 262 aaKnown RBP16.03■□□□□ 0.16
CCDC28A-202ENST00000611852 CD180Q99467 661 aa16.03■□□□□ 0.16
CCDC28A-202ENST00000611852 MAP3K3Q99759 626 aa16.03■□□□□ 0.16
CCDC28A-202ENST00000611852 POPDC3Q9HBV1 291 aa16.03■□□□□ 0.16
CCDC28A-202ENST00000611852 AKAP7Q9P0M2 348 aaPredicted RBP16.03■□□□□ 0.16
CCDC28A-202ENST00000611852 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.03■□□□□ 0.16
CCDC28A-202ENST00000611852 POMT2Q9UKY4 750 aa16.03■□□□□ 0.16
CCDC28A-202ENST00000611852 V9GYY5 206 aaPredicted RBP16.03■□□□□ 0.16
CCDC28A-202ENST00000611852 ASPMQ8IZT6 3477 aa16.02■□□□□ 0.16
CCDC28A-202ENST00000611852 A0A087WUV0 522 aaPredicted RBP16.02■□□□□ 0.15
CCDC28A-202ENST00000611852 IGHV5-51A0A0C4DH38 117 aa16.02■□□□□ 0.15
CCDC28A-202ENST00000611852 PIPSLA2A3N6 862 aa16.02■□□□□ 0.15
CCDC28A-202ENST00000611852 TLCD2A6NGC4 264 aa16.02■□□□□ 0.15
CCDC28A-202ENST00000611852 C2orf74A8MZ97 194 aa16.02■□□□□ 0.15
CCDC28A-202ENST00000611852 C1QTNF9BB2RNN3 333 aa16.02■□□□□ 0.15
CCDC28A-202ENST00000611852 MYO1CO00159 1063 aa16.02■□□□□ 0.15
CCDC28A-202ENST00000611852 RIPK2O43353 540 aa16.02■□□□□ 0.15
CCDC28A-202ENST00000611852 ITGA2BP08514 1039 aa16.02■□□□□ 0.15
CCDC28A-202ENST00000611852 ABHD2P08910 425 aa16.02■□□□□ 0.15
CCDC28A-202ENST00000611852 C1QTNF9P0C862 333 aa16.02■□□□□ 0.15
CCDC28A-202ENST00000611852 PRDX3P30048 256 aaKnown RBP16.02■□□□□ 0.15
CCDC28A-202ENST00000611852 SLC12A2P55011 1212 aa16.02■□□□□ 0.15
CCDC28A-202ENST00000611852 USP10Q14694 798 aaKnown RBP16.02■□□□□ 0.15
CCDC28A-202ENST00000611852 UBE2R2Q712K3 238 aaPredicted RBP16.02■□□□□ 0.15
CCDC28A-202ENST00000611852 LMNTD1Q8N9Z9 388 aa16.02■□□□□ 0.15
CCDC28A-202ENST00000611852 OR2L8Q8NGY9 312 aa16.02■□□□□ 0.15
CCDC28A-202ENST00000611852 UHMK1Q8TAS1 419 aaKnown RBP16.02■□□□□ 0.15
CCDC28A-202ENST00000611852 DENND1AQ8TEH3 1009 aa16.02■□□□□ 0.15
CCDC28A-202ENST00000611852 UBXN4Q92575 508 aa16.02■□□□□ 0.15
CCDC28A-202ENST00000611852 DLG3Q92796 817 aa16.02■□□□□ 0.15
CCDC28A-202ENST00000611852 TSPAN17Q96FV3 270 aa16.02■□□□□ 0.15
CCDC28A-202ENST00000611852 PDLIM5Q96HC4 596 aaKnown RBP16.02■□□□□ 0.15
CCDC28A-202ENST00000611852 PPM1MQ96MI6 270 aa16.02■□□□□ 0.15
CCDC28A-202ENST00000611852 RAB11FIP5Q9BXF6 653 aa16.02■□□□□ 0.15
CCDC28A-202ENST00000611852 ZNF768Q9H5H4 540 aaKnown RBP16.02■□□□□ 0.15
CCDC28A-202ENST00000611852 SYTL2Q9HCH5 934 aa16.02■□□□□ 0.15
CCDC28A-202ENST00000611852 GPAMQ9HCL2 828 aa16.02■□□□□ 0.15
CCDC28A-202ENST00000611852 SPHK1Q9NYA1 384 aa16.02■□□□□ 0.15
CCDC28A-202ENST00000611852 ACTR10Q9NZ32 417 aa16.02■□□□□ 0.15
CCDC28A-202ENST00000611852 ADAMTS6Q9UKP5 1117 aa16.02■□□□□ 0.15
CCDC28A-202ENST00000611852 AK5Q9Y6K8 562 aa16.02■□□□□ 0.15
CCDC28A-202ENST00000611852 ZBTB14O43829 449 aa16.01■□□□□ 0.15
CCDC28A-202ENST00000611852 WISP3O95389 354 aaPredicted RBP16.01■□□□□ 0.15
CCDC28A-202ENST00000611852 JMJD7P0C870 316 aa16.01■□□□□ 0.15
CCDC28A-202ENST00000611852 CCL4P13236 92 aa16.01■□□□□ 0.15
CCDC28A-202ENST00000611852 STMN1P16949 149 aa16.01■□□□□ 0.15
CCDC28A-202ENST00000611852 ITIH1P19827 911 aa16.01■□□□□ 0.15
CCDC28A-202ENST00000611852 SEPHS1P49903 392 aa16.01■□□□□ 0.15
CCDC28A-202ENST00000611852 VSNL1P62760 191 aa16.01■□□□□ 0.15
CCDC28A-202ENST00000611852 CYP4F3Q08477 520 aa16.01■□□□□ 0.15
CCDC28A-202ENST00000611852 ZKSCAN8Q15776 578 aaPredicted RBP16.01■□□□□ 0.15
CCDC28A-202ENST00000611852 UAP1Q16222 522 aaPredicted RBP16.01■□□□□ 0.15
CCDC28A-202ENST00000611852 ERCC6LQ2NKX8 1250 aa16.01■□□□□ 0.15
CCDC28A-202ENST00000611852 IGF2-ASQ6U949 168 aa16.01■□□□□ 0.15
CCDC28A-202ENST00000611852 UNQ6494/PRO21346Q6UXR6 183 aa16.01■□□□□ 0.15
CCDC28A-202ENST00000611852 NKAPQ8N5F7 415 aaKnown RBP16.01■□□□□ 0.15
CCDC28A-202ENST00000611852 OR9A1PQ8NGU1 263 aa16.01■□□□□ 0.15
CCDC28A-202ENST00000611852 FLVCR1-AS1Q8TAF5 88 aa16.01■□□□□ 0.15
CCDC28A-202ENST00000611852 SLC44A1Q8WWI5 657 aa16.01■□□□□ 0.15
CCDC28A-202ENST00000611852 KLHL6Q8WZ60 621 aa16.01■□□□□ 0.15
CCDC28A-202ENST00000611852 SLC46A1Q96NT5 459 aa16.01■□□□□ 0.15
CCDC28A-202ENST00000611852 EPB41L4BQ9H329 900 aa16.01■□□□□ 0.15
CCDC28A-202ENST00000611852 SPATA7Q9P0W8 599 aa16.01■□□□□ 0.15
CCDC28A-202ENST00000611852 PISDQ9UG56 409 aa16.01■□□□□ 0.15
CCDC28A-202ENST00000611852 WDFY3Q8IZQ1 3526 aa16.01■□□□□ 0.15
CCDC28A-202ENST00000611852 FRYQ5TBA9 3013 aa16.01■□□□□ 0.15
CCDC28A-202ENST00000611852 HMX2A2RU54 273 aa16■□□□□ 0.15
CCDC28A-202ENST00000611852 SLC16A5O15375 505 aa16■□□□□ 0.15
CCDC28A-202ENST00000611852 PHGDHO43175 533 aaKnown RBP16■□□□□ 0.15
CCDC28A-202ENST00000611852 CTIFO43310 598 aaKnown RBP16■□□□□ 0.15
CCDC28A-202ENST00000611852 BRINP1O60477 761 aa16■□□□□ 0.15
CCDC28A-202ENST00000611852 DXOO77932 396 aaKnown RBP16■□□□□ 0.15
CCDC28A-202ENST00000611852 CAPNS1P04632 268 aa16■□□□□ 0.15
CCDC28A-202ENST00000611852 C8GP07360 202 aa16■□□□□ 0.15
CCDC28A-202ENST00000611852 ERGP11308 486 aa16■□□□□ 0.15
CCDC28A-202ENST00000611852 FGF3P11487 239 aaPredicted RBP16■□□□□ 0.15
CCDC28A-202ENST00000611852 UGT2B7P16662 529 aa16■□□□□ 0.15
CCDC28A-202ENST00000611852 MAP4P27816 1152 aaKnown RBP16■□□□□ 0.15
CCDC28A-202ENST00000611852 PEBP1P30086 187 aaKnown RBP16■□□□□ 0.15
CCDC28A-202ENST00000611852 SP140Q13342 867 aa16■□□□□ 0.15
CCDC28A-202ENST00000611852 KIR2DS3Q14952 304 aa16■□□□□ 0.15
CCDC28A-202ENST00000611852 CYP2A13Q16696 494 aa16■□□□□ 0.15
CCDC28A-202ENST00000611852 ANKS6Q68DC2 871 aa16■□□□□ 0.15
CCDC28A-202ENST00000611852 WDR93Q6P2C0 686 aa16■□□□□ 0.15
CCDC28A-202ENST00000611852 SPESP1Q6UW49 350 aa16■□□□□ 0.15
CCDC28A-202ENST00000611852 LSMEM2Q8N112 164 aa16■□□□□ 0.15
CCDC28A-202ENST00000611852 CARFQ8N187 725 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 99 ms