RNA–Protein interactions for RNA: ENST00000602557.5

CSMD1-216, Transcript of CUB and Sushi multiple domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CSMD1, Length 11,740 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-216ENST00000602557 ZNF773Q6PK81 442 aa8.55□□□□□ -1.04
CSMD1-216ENST00000602557 ZNF662Q6ZS27 426 aa8.55□□□□□ -1.04
CSMD1-216ENST00000602557 CADM2Q8N3J6 435 aa8.55□□□□□ -1.04
CSMD1-216ENST00000602557 C2orf73Q8N5S3 287 aaPredicted RBP8.55□□□□□ -1.04
CSMD1-216ENST00000602557 OR4K2Q8NGD2 314 aa8.55□□□□□ -1.04
CSMD1-216ENST00000602557 ZNF563Q8TA94 476 aa8.55□□□□□ -1.04
CSMD1-216ENST00000602557 FERD3LQ96RJ6 166 aa8.55□□□□□ -1.04
CSMD1-216ENST00000602557 MCCC1Q96RQ3 725 aaPredicted RBP8.55□□□□□ -1.04
CSMD1-216ENST00000602557 ROBO3Q96MS0 1386 aa8.55□□□□□ -1.04
CSMD1-216ENST00000602557 FAM86C2PA6NEL3 165 aa8.55□□□□□ -1.04
CSMD1-216ENST00000602557 ALOX15BO15296 676 aa8.55□□□□□ -1.04
CSMD1-216ENST00000602557 CDRT1O95170 752 aa8.55□□□□□ -1.04
CSMD1-216ENST00000602557 ACSL1P33121 698 aa8.55□□□□□ -1.04
CSMD1-216ENST00000602557 CCR10P46092 362 aa8.55□□□□□ -1.04
CSMD1-216ENST00000602557 SMAD3P84022 425 aaKnown RBP8.55□□□□□ -1.04
CSMD1-216ENST00000602557 RELAQ04206 551 aa8.55□□□□□ -1.04
CSMD1-216ENST00000602557 FBXO48Q5FWF7 155 aa8.55□□□□□ -1.04
CSMD1-216ENST00000602557 IRF2BP2Q7Z5L9 587 aa8.55□□□□□ -1.04
CSMD1-216ENST00000602557 EBPLQ9BY08 206 aa8.55□□□□□ -1.04
CSMD1-216ENST00000602557 TMEM185BQ9H7F4 350 aa8.55□□□□□ -1.04
CSMD1-216ENST00000602557 FBRSQ9HAH7 460 aa8.55□□□□□ -1.04
CSMD1-216ENST00000602557 UPB1Q9UBR1 384 aa8.55□□□□□ -1.04
CSMD1-216ENST00000602557 C1QTNF3-AMACRE9PGA6 284 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 H3BNH8 94 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 TSPAN1O60635 241 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 SLITRK5O94991 958 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 SPATA31D3P0C874 917 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 ECM1Q16610 540 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 C9orf57Q5W0N0 161 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 SPATA31D4Q6ZUB0 917 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 PHYKPLQ8IUZ5 450 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 AP2M1Q96CW1 435 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 SAMD4AQ9UPU9 718 aaKnown RBP8.54□□□□□ -1.04
CSMD1-216ENST00000602557 CYP3A7-CYP3A51PA0A087WV96 503 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP8.54□□□□□ -1.04
CSMD1-216ENST00000602557 TEX46H3BTG2 121 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 CXCR6O00574 342 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 PPEF2O14830 753 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 SNRNP200O75643 2136 aaKnown RBP8.54□□□□□ -1.04
CSMD1-216ENST00000602557 CCNB2O95067 398 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 CYP3A7P24462 503 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 IKBKEQ14164 716 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 PLEKHG7Q6ZR37 379 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 C17orf64Q86WR6 236 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 SLC22A8Q8TCC7 542 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 CCDC107Q8WV48 283 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 TWIST2Q8WVJ9 160 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 SPATA31D1Q6ZQQ2 1576 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 PEAK1Q9H792 1746 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 B4GALT5O43286 388 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 MFSD11O43934 449 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 PPIBP23284 216 aaKnown RBP8.54□□□□□ -1.04
CSMD1-216ENST00000602557 TMED4Q7Z7H5 227 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 DNASE1L2Q92874 299 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 UROC1Q96N76 676 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 ZNF317Q96PQ6 595 aaPredicted RBP8.54□□□□□ -1.04
CSMD1-216ENST00000602557 TEFMQ96QE5 360 aaKnown RBP8.54□□□□□ -1.04
CSMD1-216ENST00000602557 NXF3Q9H4D5 531 aaKnown RBP8.54□□□□□ -1.04
CSMD1-216ENST00000602557 SLC17A6Q9P2U8 582 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 TTLL8A6PVC2 850 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 KIR3DL1P43629 444 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 PCBP1Q15365 356 aaKnown RBP eCLIP8.54□□□□□ -1.04
CSMD1-216ENST00000602557 RNASEH2BQ5TBB1 312 aaKnown RBP8.54□□□□□ -1.04
CSMD1-216ENST00000602557 ANKRD22Q5VYY1 191 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 ZYG11AQ6WRX3 759 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 P2RY11Q96G91 374 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 HMGXB4Q9UGU5 601 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 RIMKLBQ9ULI2 386 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 ANXA2P2A6NMY6 339 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 ANXA2P07355 339 aaKnown RBP8.54□□□□□ -1.04
CSMD1-216ENST00000602557 WDR4P57081 412 aaKnown RBP8.54□□□□□ -1.04
CSMD1-216ENST00000602557 CAPN13Q6MZZ7 669 aaPredicted RBP8.54□□□□□ -1.04
CSMD1-216ENST00000602557 ATCAYQ86WG3 371 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 COPS8Q99627 209 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 B3GNT5Q9BYG0 378 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 RNF208Q9H0X6 261 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 HCN3Q9P1Z3 774 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 ELOVL7A1L3X0 281 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 SRCP12931 536 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 CTNNB1P35222 781 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 CXCR3P49682 368 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 NOMO3P69849 1222 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 CAPSQ13938 189 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 SLC25A52Q3SY17 297 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 NOMO2Q5JPE7 1267 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 CHCHD4Q8N4Q1 142 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 BANPQ8N9N5 519 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 CFAP97Q9P2B7 532 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 RSL1D1O76021 490 aaKnown RBP8.54□□□□□ -1.04
CSMD1-216ENST00000602557 NRG3P56975 720 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 CREMQ03060 361 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 USP41Q3LFD5 358 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 RAVER1Q8IY67 606 aaKnown RBP8.54□□□□□ -1.04
CSMD1-216ENST00000602557 RASGEF1CQ8N431 466 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 LILRB4Q8NHJ6 448 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 MFSD14AQ96MC6 490 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 GPER1Q99527 375 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 CCDC86Q9H6F5 360 aaKnown RBP8.54□□□□□ -1.04
CSMD1-216ENST00000602557 LRTM1Q9HBL6 345 aa8.54□□□□□ -1.04
CSMD1-216ENST00000602557 MAN2B2Q9Y2E5 1009 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms