RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	PPP2CB	P62714	309 aa		11.43	□□□□□ -0.58
VRK3-223	ENST00000601341	PPP2CA	P67775	309 aa		11.43	□□□□□ -0.58
VRK3-223	ENST00000601341	MRPS22	P82650	360 aa	Known RBP	11.43	□□□□□ -0.58
VRK3-223	ENST00000601341	CDK3	Q00526	305 aa		11.43	□□□□□ -0.58
VRK3-223	ENST00000601341	MS4A2	Q01362	244 aa		11.43	□□□□□ -0.58
VRK3-223	ENST00000601341	ROR2	Q01974	943 aa	Known RBP	11.43	□□□□□ -0.58
VRK3-223	ENST00000601341	FOXM1	Q08050	763 aa		11.43	□□□□□ -0.58
VRK3-223	ENST00000601341	GTF2H3	Q13889	308 aa		11.43	□□□□□ -0.58
VRK3-223	ENST00000601341	LIN52	Q52LA3	116 aa		11.43	□□□□□ -0.58
VRK3-223	ENST00000601341	REP15	Q6BDI9	236 aa		11.43	□□□□□ -0.58
VRK3-223	ENST00000601341	OGFOD2	Q6N063	350 aa		11.43	□□□□□ -0.58
VRK3-223	ENST00000601341	SLC30A9	Q6PML9	568 aa		11.43	□□□□□ -0.58
VRK3-223	ENST00000601341	UGT2A3	Q6UWM9	527 aa		11.43	□□□□□ -0.58
VRK3-223	ENST00000601341	TRIM74	Q86UV6	250 aa		11.43	□□□□□ -0.58
VRK3-223	ENST00000601341	CPNE9	Q8IYJ1	553 aa		11.43	□□□□□ -0.58
VRK3-223	ENST00000601341	DENND6B	Q8NEG7	585 aa		11.43	□□□□□ -0.58
VRK3-223	ENST00000601341	LINGO1	Q96FE5	620 aa		11.43	□□□□□ -0.58
VRK3-223	ENST00000601341	PPP1R36	Q96LQ0	422 aa		11.43	□□□□□ -0.58
VRK3-223	ENST00000601341	ATOH8	Q96SQ7	321 aa		11.43	□□□□□ -0.58
VRK3-223	ENST00000601341	IER2	Q9BTL4	223 aa		11.43	□□□□□ -0.58
VRK3-223	ENST00000601341	NUSAP1	Q9BXS6	441 aa	Known RBP	11.43	□□□□□ -0.58
VRK3-223	ENST00000601341	OR2AG1	Q9H205	316 aa		11.43	□□□□□ -0.58
VRK3-223	ENST00000601341	MUC13	Q9H3R2	512 aa		11.43	□□□□□ -0.58
VRK3-223	ENST00000601341	CYP4F12	Q9HCS2	524 aa		11.43	□□□□□ -0.58
VRK3-223	ENST00000601341	PHPT1	Q9NRX4	125 aa	Predicted RBP	11.43	□□□□□ -0.58
VRK3-223	ENST00000601341	MBD1	Q9UIS9	605 aa	Predicted RBP	11.43	□□□□□ -0.58
VRK3-223	ENST00000601341	PADI4	Q9UM07	663 aa		11.43	□□□□□ -0.58
VRK3-223	ENST00000601341	CYP8B1	Q9UNU6	501 aa		11.43	□□□□□ -0.58
VRK3-223	ENST00000601341	NDUFAF1	Q9Y375	327 aa		11.43	□□□□□ -0.58
VRK3-223	ENST00000601341	TCRBV3S1	A0A5B6	114 aa		11.42	□□□□□ -0.58
VRK3-223	ENST00000601341	EIF3F	O00303	357 aa	Predicted RBP	11.42	□□□□□ -0.58
VRK3-223	ENST00000601341	FBP2	O00757	339 aa		11.42	□□□□□ -0.58
VRK3-223	ENST00000601341	UBFD1	O14562	309 aa	Known RBP	11.42	□□□□□ -0.58
VRK3-223	ENST00000601341	SLC31A1	O15431	190 aa		11.42	□□□□□ -0.58
VRK3-223	ENST00000601341	CFLAR	O15519	480 aa		11.42	□□□□□ -0.58
VRK3-223	ENST00000601341	SGTA	O43765	313 aa		11.42	□□□□□ -0.58
VRK3-223	ENST00000601341	KLK8	O60259	260 aa		11.42	□□□□□ -0.58
VRK3-223	ENST00000601341	STAMBP	O95630	424 aa		11.42	□□□□□ -0.58
VRK3-223	ENST00000601341	MTHFD2	P13995	350 aa		11.42	□□□□□ -0.58
VRK3-223	ENST00000601341	CALR	P27797	417 aa	Known RBP	11.42	□□□□□ -0.58
VRK3-223	ENST00000601341	AOAH	P28039	575 aa		11.42	□□□□□ -0.58
VRK3-223	ENST00000601341	SLC7A1	P30825	629 aa		11.42	□□□□□ -0.58
VRK3-223	ENST00000601341	CCR7	P32248	378 aa		11.42	□□□□□ -0.58
VRK3-223	ENST00000601341	CTSC	P53634	463 aa		11.42	□□□□□ -0.58
VRK3-223	ENST00000601341	MTAP	Q13126	283 aa		11.42	□□□□□ -0.58
VRK3-223	ENST00000601341	BCL7A	Q4VC05	210 aa		11.42	□□□□□ -0.58
VRK3-223	ENST00000601341	AGK	Q53H12	422 aa		11.42	□□□□□ -0.58
VRK3-223	ENST00000601341	RNF220	Q5VTB9	566 aa		11.42	□□□□□ -0.58
VRK3-223	ENST00000601341	KANK2	Q63ZY3	851 aa		11.42	□□□□□ -0.58
VRK3-223	ENST00000601341	TMEM220	Q6QAJ8	160 aa		11.42	□□□□□ -0.58
VRK3-223	ENST00000601341	CYHR1	Q6ZMK1	362 aa		11.42	□□□□□ -0.58
VRK3-223	ENST00000601341	SPNS2	Q8IVW8	549 aa		11.42	□□□□□ -0.58
VRK3-223	ENST00000601341	CAMKK1	Q8N5S9	505 aa		11.42	□□□□□ -0.58
VRK3-223	ENST00000601341	HIPK4	Q8NE63	616 aa		11.42	□□□□□ -0.58
VRK3-223	ENST00000601341	HMGCLL1	Q8TB92	370 aa		11.42	□□□□□ -0.58
VRK3-223	ENST00000601341	ASZ1	Q8WWH4	475 aa		11.42	□□□□□ -0.58
VRK3-223	ENST00000601341	ZUFSP	Q96AP4	578 aa		11.42	□□□□□ -0.58
VRK3-223	ENST00000601341	PTER	Q96BW5	349 aa		11.42	□□□□□ -0.58
VRK3-223	ENST00000601341	PHF21B	Q96EK2	531 aa		11.42	□□□□□ -0.58
VRK3-223	ENST00000601341	TOE1	Q96GM8	510 aa	Known RBP	11.42	□□□□□ -0.58
VRK3-223	ENST00000601341	NPAS2	Q99743	824 aa		11.42	□□□□□ -0.58
VRK3-223	ENST00000601341	C8orf4	Q9NR00	106 aa		11.42	□□□□□ -0.58
VRK3-223	ENST00000601341	PAPOLB	Q9NRJ5	636 aa	Known RBP	11.42	□□□□□ -0.58
VRK3-223	ENST00000601341	ATXN10	Q9UBB4	475 aa		11.42	□□□□□ -0.58
VRK3-223	ENST00000601341	CROT	Q9UKG9	612 aa		11.42	□□□□□ -0.58
VRK3-223	ENST00000601341	GPR34	Q9UPC5	381 aa		11.42	□□□□□ -0.58
VRK3-223	ENST00000601341	TRPM6	Q9BX84	2022 aa		11.42	□□□□□ -0.58
VRK3-223	ENST00000601341	GPR89A	B7ZAQ6	455 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	BTN3A1	O00481	513 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	MRAS	O14807	208 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	AZIN1	O14977	448 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	RAD51B	O15315	384 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	LAT	O43561	262 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	DNAJA2	O60884	412 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	TNFAIP8	O95379	198 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	DCN	P07585	359 aa	Known RBP	11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	GSTM1	P09488	218 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	GPR89B	P0CG08	455 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	IDO1	P14902	403 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	GPX3	P22352	226 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	CD6	P30203	668 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	ERF	P50548	548 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	CCR5	P51681	352 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	PKNOX1	P55347	436 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	GSTM4	Q03013	218 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	SIGLEC14	Q08ET2	396 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	LCP2	Q13094	533 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	ADRM1	Q16186	407 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	LRRC36	Q1X8D7	754 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	TMEM31	Q5JXX7	168 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	PLEKHS1	Q5SXH7	462 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	GK5	Q6ZS86	529 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	SPATA19	Q7Z5L4	167 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	TRAPPC5	Q8IUR0	188 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	ALDH16A1	Q8IZ83	802 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	MYO1H	Q8N1T3	1032 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	MINDY1	Q8N5J2	469 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	TMEM102	Q8N9M5	508 aa	Predicted RBP	11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	ELMO1	Q92556	727 aa		11.41	□□□□□ -0.58
VRK3-223	ENST00000601341	CCM2	Q9BSQ5	444 aa		11.41	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms