RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 DTX3LQ8TDB6 740 aa12.39□□□□□ -0.43
UPF1-208ENST00000600012 ALKBH8Q96BT7 664 aaKnown RBP12.39□□□□□ -0.43
UPF1-208ENST00000600012 TSPAN17Q96FV3 270 aa12.39□□□□□ -0.43
UPF1-208ENST00000600012 VPS35Q96QK1 796 aa12.39□□□□□ -0.43
UPF1-208ENST00000600012 TEX101Q9BY14 249 aa12.39□□□□□ -0.43
UPF1-208ENST00000600012 SSU72Q9NP77 194 aaKnown RBP12.39□□□□□ -0.43
UPF1-208ENST00000600012 SPATS2LQ9NUQ6 558 aaKnown RBP12.39□□□□□ -0.43
UPF1-208ENST00000600012 MKS1Q9NXB0 559 aa12.39□□□□□ -0.43
UPF1-208ENST00000600012 TAAR2Q9P1P5 351 aa12.39□□□□□ -0.43
UPF1-208ENST00000600012 GNPTGQ9UJJ9 305 aa12.39□□□□□ -0.43
UPF1-208ENST00000600012 MED16Q9Y2X0 877 aa12.39□□□□□ -0.43
UPF1-208ENST00000600012 VWA7Q9Y334 891 aa12.39□□□□□ -0.43
UPF1-208ENST00000600012 HECTD1Q9ULT8 2610 aa12.38□□□□□ -0.43
UPF1-208ENST00000600012 STMND1H3BQB6 276 aa12.38□□□□□ -0.43
UPF1-208ENST00000600012 DNAJC6O75061 913 aa12.38□□□□□ -0.43
UPF1-208ENST00000600012 VPS26AO75436 327 aa12.38□□□□□ -0.43
UPF1-208ENST00000600012 ESR1P03372 595 aa12.38□□□□□ -0.43
UPF1-208ENST00000600012 CEACAM5P06731 702 aa12.38□□□□□ -0.43
UPF1-208ENST00000600012 FAM87AP0C7U9 286 aa12.38□□□□□ -0.43
UPF1-208ENST00000600012 CHN1P15882 459 aa12.38□□□□□ -0.43
UPF1-208ENST00000600012 TEAD1P28347 426 aa12.38□□□□□ -0.43
UPF1-208ENST00000600012 CRABP2P29373 138 aa12.38□□□□□ -0.43
UPF1-208ENST00000600012 RPA3P35244 121 aaPredicted RBP12.38□□□□□ -0.43
UPF1-208ENST00000600012 NSG1P42857 185 aa12.38□□□□□ -0.43
UPF1-208ENST00000600012 GPR3P46089 330 aa12.38□□□□□ -0.43
UPF1-208ENST00000600012 POLD2P49005 469 aa12.38□□□□□ -0.43
UPF1-208ENST00000600012 OR1D5P58170 312 aa12.38□□□□□ -0.43
UPF1-208ENST00000600012 CDK3Q00526 305 aa12.38□□□□□ -0.43
UPF1-208ENST00000600012 DPTQ07507 201 aa12.38□□□□□ -0.43
UPF1-208ENST00000600012 ILF2Q12905 390 aaKnown RBP12.38□□□□□ -0.43
UPF1-208ENST00000600012 TRA2AQ13595 282 aaKnown RBP eCLIP12.38□□□□□ -0.43
UPF1-208ENST00000600012 TBR1Q16650 682 aa12.38□□□□□ -0.43
UPF1-208ENST00000600012 C16orf46Q6P387 395 aa12.38□□□□□ -0.43
UPF1-208ENST00000600012 PHYKPLQ8IUZ5 450 aa12.38□□□□□ -0.43
UPF1-208ENST00000600012 CNPY4Q8N129 248 aa12.38□□□□□ -0.43
UPF1-208ENST00000600012 PLD6Q8N2A8 252 aaKnown RBP12.38□□□□□ -0.43
UPF1-208ENST00000600012 TCP10LQ8TDR4 215 aa12.38□□□□□ -0.43
UPF1-208ENST00000600012 KCTD4Q8WVF5 259 aa12.38□□□□□ -0.43
UPF1-208ENST00000600012 CABS1Q96KC9 395 aa12.38□□□□□ -0.43
UPF1-208ENST00000600012 GPR21Q99679 349 aa12.38□□□□□ -0.43
UPF1-208ENST00000600012 SLC30A3Q99726 388 aa12.38□□□□□ -0.43
UPF1-208ENST00000600012 NUDT22Q9BRQ3 303 aa12.38□□□□□ -0.43
UPF1-208ENST00000600012 GPAMQ9HCL2 828 aa12.38□□□□□ -0.43
UPF1-208ENST00000600012 SARS2Q9NP81 518 aaKnown RBP12.38□□□□□ -0.43
UPF1-208ENST00000600012 ZNF358Q9NW07 568 aa12.38□□□□□ -0.43
UPF1-208ENST00000600012 SLC17A7Q9P2U7 560 aa12.38□□□□□ -0.43
UPF1-208ENST00000600012 GALPQ9UBC7 116 aa12.38□□□□□ -0.43
UPF1-208ENST00000600012 IL17BQ9UHF5 180 aa12.38□□□□□ -0.43
UPF1-208ENST00000600012 TLK1Q9UKI8 766 aa12.38□□□□□ -0.43
UPF1-208ENST00000600012 CNOT6Q9ULM6 557 aaKnown RBP12.38□□□□□ -0.43
UPF1-208ENST00000600012 OAS3Q9Y6K5 1087 aaKnown RBP12.38□□□□□ -0.43
UPF1-208ENST00000600012 PTPN13Q12923 2485 aa12.37□□□□□ -0.43
UPF1-208ENST00000600012 IGHV5-10-1A0A0J9YXX1 117 aa12.37□□□□□ -0.43
UPF1-208ENST00000600012 E5RI56 91 aa12.37□□□□□ -0.43
UPF1-208ENST00000600012 TERTO14746 1132 aaKnown RBP12.37□□□□□ -0.43
UPF1-208ENST00000600012 GLRA3O75311 464 aa12.37□□□□□ -0.43
UPF1-208ENST00000600012 SLC25A14O95258 325 aaPredicted RBP12.37□□□□□ -0.43
UPF1-208ENST00000600012 WISP3O95389 354 aaPredicted RBP12.37□□□□□ -0.43
UPF1-208ENST00000600012 CCL4P13236 92 aa12.37□□□□□ -0.43
UPF1-208ENST00000600012 WT1P19544 449 aaPredicted RBP12.37□□□□□ -0.43
UPF1-208ENST00000600012 MSH3P20585 1137 aa12.37□□□□□ -0.43
UPF1-208ENST00000600012 AK4P27144 223 aaPredicted RBP12.37□□□□□ -0.43
UPF1-208ENST00000600012 GNPDA1P46926 289 aa12.37□□□□□ -0.43
UPF1-208ENST00000600012 ADARP55265 1226 aaKnown RBP12.37□□□□□ -0.43
UPF1-208ENST00000600012 DLG1Q12959 904 aa12.37□□□□□ -0.43
UPF1-208ENST00000600012 PDAP1Q13442 181 aaKnown RBP12.37□□□□□ -0.43
UPF1-208ENST00000600012 LDLRAP1Q5SW96 308 aa12.37□□□□□ -0.43
UPF1-208ENST00000600012 SLC30A9Q6PML9 568 aa12.37□□□□□ -0.43
UPF1-208ENST00000600012 TMEM207Q6UWW9 146 aa12.37□□□□□ -0.43
UPF1-208ENST00000600012 ADAMTSL4Q6UY14 1074 aa12.37□□□□□ -0.43
UPF1-208ENST00000600012 ZNF574Q6ZN55 896 aaPredicted RBP12.37□□□□□ -0.43
UPF1-208ENST00000600012 NLRP8Q86W28 1048 aa12.37□□□□□ -0.43
UPF1-208ENST00000600012 CENPLQ8N0S6 344 aaPredicted RBP12.37□□□□□ -0.43
UPF1-208ENST00000600012 NAGSQ8N159 534 aa12.37□□□□□ -0.43
UPF1-208ENST00000600012 SPATA6LQ8N4H0 392 aa12.37□□□□□ -0.43
UPF1-208ENST00000600012 SIDT2Q8NBJ9 832 aaKnown RBP12.37□□□□□ -0.43
UPF1-208ENST00000600012 RCBTB1Q8NDN9 531 aa12.37□□□□□ -0.43
UPF1-208ENST00000600012 GIMAP7Q8NHV1 300 aa12.37□□□□□ -0.43
UPF1-208ENST00000600012 DCUN1D1Q96GG9 259 aa12.37□□□□□ -0.43
UPF1-208ENST00000600012 CCDC74BQ96LY2 380 aa12.37□□□□□ -0.43
UPF1-208ENST00000600012 FAM111AQ96PZ2 611 aa12.37□□□□□ -0.43
UPF1-208ENST00000600012 TAAR9Q96RI9 348 aa12.37□□□□□ -0.43
UPF1-208ENST00000600012 DPYSL5Q9BPU6 564 aa12.37□□□□□ -0.43
UPF1-208ENST00000600012 TRIM4Q9C037 500 aa12.37□□□□□ -0.43
UPF1-208ENST00000600012 UNKQ9C0B0 810 aaKnown RBP12.37□□□□□ -0.43
UPF1-208ENST00000600012 IQCGQ9H095 443 aaKnown RBP12.37□□□□□ -0.43
UPF1-208ENST00000600012 CNOT10Q9H9A5 744 aaKnown RBP12.37□□□□□ -0.43
UPF1-208ENST00000600012 NKIRAS1Q9NYS0 192 aa12.37□□□□□ -0.43
UPF1-208ENST00000600012 EMCNQ9ULC0 261 aa12.37□□□□□ -0.43
UPF1-208ENST00000600012 SUFUQ9UMX1 484 aa12.37□□□□□ -0.43
UPF1-208ENST00000600012 SLC17A4Q9Y2C5 497 aa12.37□□□□□ -0.43
UPF1-208ENST00000600012 ACOT9Q9Y305 439 aa12.37□□□□□ -0.43
UPF1-208ENST00000600012 PCDHGA3Q9Y5H0 932 aa12.37□□□□□ -0.43
UPF1-208ENST00000600012 COMMD10Q9Y6G5 202 aa12.37□□□□□ -0.43
UPF1-208ENST00000600012 A0A087X1B8 175 aa12.36□□□□□ -0.43
UPF1-208ENST00000600012 OR2AG2A6NM03 316 aa12.36□□□□□ -0.43
UPF1-208ENST00000600012 CFAP99D6REC4 459 aa12.36□□□□□ -0.43
UPF1-208ENST00000600012 SUV39H1O43463 412 aa12.36□□□□□ -0.43
UPF1-208ENST00000600012 ZWINTO95229 277 aa12.36□□□□□ -0.43
UPF1-208ENST00000600012 FUCA1P04066 466 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms