RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 ZFYVE1Q9HBF4 777 aa13.53□□□□□ -0.24
SHKBP1-218ENST00000598907 LATS2Q9NRM7 1088 aa13.53□□□□□ -0.24
SHKBP1-218ENST00000598907 TREX1Q9NSU2 369 aa13.53□□□□□ -0.24
SHKBP1-218ENST00000598907 CPNE7Q9UBL6 633 aa13.53□□□□□ -0.24
SHKBP1-218ENST00000598907 ZNHIT2Q9UHR6 403 aa13.53□□□□□ -0.24
SHKBP1-218ENST00000598907 RARRES3Q9UL19 164 aa13.53□□□□□ -0.24
SHKBP1-218ENST00000598907 SNX7Q9UNH6 387 aa13.53□□□□□ -0.24
SHKBP1-218ENST00000598907 PCYT1BQ9Y5K3 369 aaPredicted RBP13.53□□□□□ -0.24
SHKBP1-218ENST00000598907 ARL5AQ9Y689 179 aa13.53□□□□□ -0.24
SHKBP1-218ENST00000598907 NIPBLQ6KC79 2804 aaeCLIP13.52□□□□□ -0.24
SHKBP1-218ENST00000598907 C1orf232A0A0U1RR37 186 aa13.52□□□□□ -0.25
SHKBP1-218ENST00000598907 LILRA5A6NI73 299 aa13.52□□□□□ -0.25
SHKBP1-218ENST00000598907 C2orf81A6NN90 581 aa13.52□□□□□ -0.25
SHKBP1-218ENST00000598907 E2F3O00716 465 aa13.52□□□□□ -0.25
SHKBP1-218ENST00000598907 USP1O94782 785 aa13.52□□□□□ -0.25
SHKBP1-218ENST00000598907 ACP5P13686 325 aa13.52□□□□□ -0.25
SHKBP1-218ENST00000598907 AMD1P17707 334 aa13.52□□□□□ -0.25
SHKBP1-218ENST00000598907 PGAM1P18669 254 aa13.52□□□□□ -0.25
SHKBP1-218ENST00000598907 LPOP22079 712 aaPredicted RBP13.52□□□□□ -0.25
SHKBP1-218ENST00000598907 NMBRP28336 390 aa13.52□□□□□ -0.25
SHKBP1-218ENST00000598907 STC1P52823 247 aa13.52□□□□□ -0.25
SHKBP1-218ENST00000598907 KRTAP10-9P60411 292 aa13.52□□□□□ -0.25
SHKBP1-218ENST00000598907 PDE1BQ01064 536 aa13.52□□□□□ -0.25
SHKBP1-218ENST00000598907 ATP1A4Q13733 1029 aa13.52□□□□□ -0.25
SHKBP1-218ENST00000598907 FRG1Q14331 258 aaKnown RBP13.52□□□□□ -0.25
SHKBP1-218ENST00000598907 ANKRD20A4Q4UJ75 823 aa13.52□□□□□ -0.25
SHKBP1-218ENST00000598907 HP1BP3Q5SSJ5 553 aaPredicted RBP13.52□□□□□ -0.25
SHKBP1-218ENST00000598907 CACHD1Q5VU97 1274 aa13.52□□□□□ -0.25
SHKBP1-218ENST00000598907 IYDQ6PHW0 289 aa13.52□□□□□ -0.25
SHKBP1-218ENST00000598907 ANKMY2Q8IV38 441 aa13.52□□□□□ -0.25
SHKBP1-218ENST00000598907 OR13J1Q8NGT2 312 aa13.52□□□□□ -0.25
SHKBP1-218ENST00000598907 ADAMTS17Q8TE56 1095 aa13.52□□□□□ -0.25
SHKBP1-218ENST00000598907 PYROXD1Q8WU10 500 aa13.52□□□□□ -0.25
SHKBP1-218ENST00000598907 STYXQ8WUJ0 223 aa13.52□□□□□ -0.25
SHKBP1-218ENST00000598907 SCARF2Q96GP6 870 aaPredicted RBP13.52□□□□□ -0.25
SHKBP1-218ENST00000598907 TRIM56Q9BRZ2 755 aaKnown RBP13.52□□□□□ -0.25
SHKBP1-218ENST00000598907 GPR63Q9BZJ6 419 aa13.52□□□□□ -0.25
SHKBP1-218ENST00000598907 CDC42EP4Q9H3Q1 356 aaKnown RBP13.52□□□□□ -0.25
SHKBP1-218ENST00000598907 PDE7BQ9NP56 450 aa13.52□□□□□ -0.25
SHKBP1-218ENST00000598907 NLE1Q9NVX2 485 aaPredicted RBP13.52□□□□□ -0.25
SHKBP1-218ENST00000598907 CHMP2BQ9UQN3 213 aa13.52□□□□□ -0.25
SHKBP1-218ENST00000598907 PCDHGA10Q9Y5H3 936 aa13.52□□□□□ -0.25
SHKBP1-218ENST00000598907 FAM169AQ9Y6X4 670 aa13.52□□□□□ -0.25
SHKBP1-218ENST00000598907 ZCWPW2A0A1B0GU75 182 aa13.51□□□□□ -0.25
SHKBP1-218ENST00000598907 RGSL1A5PLK6 1076 aa13.51□□□□□ -0.25
SHKBP1-218ENST00000598907 H7C0S8 307 aa13.51□□□□□ -0.25
SHKBP1-218ENST00000598907 UBXN7O94888 489 aa13.51□□□□□ -0.25
SHKBP1-218ENST00000598907 TTC4O95801 387 aa13.51□□□□□ -0.25
SHKBP1-218ENST00000598907 GSTA2P09210 222 aa13.51□□□□□ -0.25
SHKBP1-218ENST00000598907 H2AFXP16104 143 aaPredicted RBP13.51□□□□□ -0.25
SHKBP1-218ENST00000598907 GPX6P59796 221 aa13.51□□□□□ -0.25
SHKBP1-218ENST00000598907 PTPRCAPQ14761 206 aa13.51□□□□□ -0.25
SHKBP1-218ENST00000598907 SPANXN3Q5MJ09 141 aa13.51□□□□□ -0.25
SHKBP1-218ENST00000598907 IRGCQ6NXR0 463 aa13.51□□□□□ -0.25
SHKBP1-218ENST00000598907 UNC5AQ6ZN44 842 aa13.51□□□□□ -0.25
SHKBP1-218ENST00000598907 RFLNAQ6ZTI6 216 aa13.51□□□□□ -0.25
SHKBP1-218ENST00000598907 CYS1Q717R9 158 aa13.51□□□□□ -0.25
SHKBP1-218ENST00000598907 TRMT10CQ7L0Y3 403 aaKnown RBP13.51□□□□□ -0.25
SHKBP1-218ENST00000598907 TECPR1Q7Z6L1 1165 aa13.51□□□□□ -0.25
SHKBP1-218ENST00000598907 CUZD1Q86UP6 607 aa13.51□□□□□ -0.25
SHKBP1-218ENST00000598907 ENDOVQ8N8Q3 282 aaKnown RBP13.51□□□□□ -0.25
SHKBP1-218ENST00000598907 RSC1A1Q92681 617 aa13.51□□□□□ -0.25
SHKBP1-218ENST00000598907 MFSD3Q96ES6 412 aa13.51□□□□□ -0.25
SHKBP1-218ENST00000598907 SGSM3Q96HU1 749 aa13.51□□□□□ -0.25
SHKBP1-218ENST00000598907 FUT8Q9BYC5 575 aa13.51□□□□□ -0.25
SHKBP1-218ENST00000598907 CHST8Q9H2A9 424 aa13.51□□□□□ -0.25
SHKBP1-218ENST00000598907 EPB41L4BQ9H329 900 aa13.51□□□□□ -0.25
SHKBP1-218ENST00000598907 NINJ2Q9NZG7 142 aa13.51□□□□□ -0.25
SHKBP1-218ENST00000598907 SAMD15Q9P1V8 674 aa13.51□□□□□ -0.25
SHKBP1-218ENST00000598907 NFKBIL1Q9UBC1 381 aaPredicted RBP13.51□□□□□ -0.25
SHKBP1-218ENST00000598907 SLC2A6Q9UGQ3 507 aa13.51□□□□□ -0.25
SHKBP1-218ENST00000598907 ZC3H7BQ9UGR2 993 aaKnown RBP13.51□□□□□ -0.25
SHKBP1-218ENST00000598907 MAD1L1Q9Y6D9 718 aa13.51□□□□□ -0.25
SHKBP1-218ENST00000598907 SLC30A1Q9Y6M5 507 aa13.51□□□□□ -0.25
SHKBP1-218ENST00000598907 PKDREJQ9NTG1 2253 aa13.51□□□□□ -0.25
SHKBP1-218ENST00000598907 UQCRHLA0A096LP55 91 aa13.5□□□□□ -0.25
SHKBP1-218ENST00000598907 BUD23O43709 281 aaKnown RBP13.5□□□□□ -0.25
SHKBP1-218ENST00000598907 PRICKLE3O43900 615 aaPredicted RBP13.5□□□□□ -0.25
SHKBP1-218ENST00000598907 SOD1P00441 154 aa13.5□□□□□ -0.25
SHKBP1-218ENST00000598907 POLBP06746 335 aa13.5□□□□□ -0.25
SHKBP1-218ENST00000598907 UQCRHP07919 91 aa13.5□□□□□ -0.25
SHKBP1-218ENST00000598907 F3P13726 295 aa13.5□□□□□ -0.25
SHKBP1-218ENST00000598907 SLC2A4P14672 509 aa13.5□□□□□ -0.25
SHKBP1-218ENST00000598907 BPIP17213 487 aa13.5□□□□□ -0.25
SHKBP1-218ENST00000598907 HTR1EP28566 365 aa13.5□□□□□ -0.25
SHKBP1-218ENST00000598907 ARCN1P48444 511 aaKnown RBP13.5□□□□□ -0.25
SHKBP1-218ENST00000598907 SPINT3P49223 89 aa13.5□□□□□ -0.25
SHKBP1-218ENST00000598907 ART3Q13508 389 aa13.5□□□□□ -0.25
SHKBP1-218ENST00000598907 CRYMQ14894 314 aa13.5□□□□□ -0.25
SHKBP1-218ENST00000598907 CRB2Q5IJ48 1285 aa13.5□□□□□ -0.25
SHKBP1-218ENST00000598907 UBAP2Q5T6F2 1119 aaKnown RBP13.5□□□□□ -0.25
SHKBP1-218ENST00000598907 KIAA0930Q6ICG6 404 aaPredicted RBP13.5□□□□□ -0.25
SHKBP1-218ENST00000598907 CASC4Q6P4E1 433 aa13.5□□□□□ -0.25
SHKBP1-218ENST00000598907 CYB5D1Q6P9G0 228 aa13.5□□□□□ -0.25
SHKBP1-218ENST00000598907 CES3Q6UWW8 571 aa13.5□□□□□ -0.25
SHKBP1-218ENST00000598907 MED25Q71SY5 747 aa13.5□□□□□ -0.25
SHKBP1-218ENST00000598907 PRSS42Q7Z5A4 293 aa13.5□□□□□ -0.25
SHKBP1-218ENST00000598907 KCNMB4Q86W47 210 aa13.5□□□□□ -0.25
SHKBP1-218ENST00000598907 PARP9Q8IXQ6 854 aa13.5□□□□□ -0.25
SHKBP1-218ENST00000598907 MREGQ8N565 214 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms