RNA–Protein interactions for RNA: ENST00000595726.1

SHKBP1-208, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 684 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-208ENST00000595726 F10P00742 488 aa13.24□□□□□ -0.29
SHKBP1-208ENST00000595726 MMP11P24347 488 aa13.24□□□□□ -0.29
SHKBP1-208ENST00000595726 CTNNA1P35221 906 aaKnown RBP13.24□□□□□ -0.29
SHKBP1-208ENST00000595726 NR2C2P49116 596 aa13.24□□□□□ -0.29
SHKBP1-208ENST00000595726 TMPRSS15P98073 1019 aa13.24□□□□□ -0.29
SHKBP1-208ENST00000595726 TFDP2Q14188 446 aa13.24□□□□□ -0.29
SHKBP1-208ENST00000595726 NOMO1Q15155 1222 aa13.24□□□□□ -0.29
SHKBP1-208ENST00000595726 ZIC1Q15915 447 aa13.24□□□□□ -0.29
SHKBP1-208ENST00000595726 CCDC50Q8IVM0 306 aa13.24□□□□□ -0.29
SHKBP1-208ENST00000595726 ADAMTS18Q8TE60 1221 aa13.24□□□□□ -0.29
SHKBP1-208ENST00000595726 CHTF18Q8WVB6 975 aa13.24□□□□□ -0.29
SHKBP1-208ENST00000595726 N4BP2L2Q92802 583 aaPredicted RBP13.24□□□□□ -0.29
SHKBP1-208ENST00000595726 CALR3Q96L12 384 aaKnown RBP13.24□□□□□ -0.29
SHKBP1-208ENST00000595726 NDC1Q9BTX1 674 aa13.24□□□□□ -0.29
SHKBP1-208ENST00000595726 AP1M1Q9BXS5 423 aa13.24□□□□□ -0.29
SHKBP1-208ENST00000595726 XKR8Q9H6D3 395 aa13.24□□□□□ -0.29
SHKBP1-208ENST00000595726 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.24□□□□□ -0.29
SHKBP1-208ENST00000595726 DNMT3AQ9Y6K1 912 aaPredicted RBP13.24□□□□□ -0.29
SHKBP1-208ENST00000595726 COLEC10Q9Y6Z7 277 aa13.24□□□□□ -0.29
SHKBP1-208ENST00000595726 ANKRD12Q6UB98 2062 aa13.24□□□□□ -0.29
SHKBP1-208ENST00000595726 MGAT4DA6NG13 374 aa13.23□□□□□ -0.29
SHKBP1-208ENST00000595726 BUD23O43709 281 aaKnown RBP13.23□□□□□ -0.29
SHKBP1-208ENST00000595726 CD63P08962 238 aa13.23□□□□□ -0.29
SHKBP1-208ENST00000595726 SLC35G4P0C7Q5 338 aa13.23□□□□□ -0.29
SHKBP1-208ENST00000595726 GABRA4P48169 554 aa13.23□□□□□ -0.29
SHKBP1-208ENST00000595726 MFAP5Q13361 173 aa13.23□□□□□ -0.29
SHKBP1-208ENST00000595726 PPP2R5EQ16537 467 aa13.23□□□□□ -0.29
SHKBP1-208ENST00000595726 GPRC6AQ5T6X5 926 aa13.23□□□□□ -0.29
SHKBP1-208ENST00000595726 MTFR2Q6P444 385 aa13.23□□□□□ -0.29
SHKBP1-208ENST00000595726 FAM151BQ6UXP7 276 aa13.23□□□□□ -0.29
SHKBP1-208ENST00000595726 NCCRP1Q6ZVX7 275 aaPredicted RBP13.23□□□□□ -0.29
SHKBP1-208ENST00000595726 BZW1Q7L1Q6 419 aaKnown RBP13.23□□□□□ -0.29
SHKBP1-208ENST00000595726 NT5DC3Q86UY8 548 aa13.23□□□□□ -0.29
SHKBP1-208ENST00000595726 RCOR2Q8IZ40 523 aa13.23□□□□□ -0.29
SHKBP1-208ENST00000595726 LRRC57Q8N9N7 239 aa13.23□□□□□ -0.29
SHKBP1-208ENST00000595726 PHC3Q8NDX5 983 aa13.23□□□□□ -0.29
SHKBP1-208ENST00000595726 SPATA22Q8NHS9 363 aa13.23□□□□□ -0.29
SHKBP1-208ENST00000595726 HAUS1Q96CS2 278 aa13.23□□□□□ -0.29
SHKBP1-208ENST00000595726 FERD3LQ96RJ6 166 aa13.23□□□□□ -0.29
SHKBP1-208ENST00000595726 DESI2Q9BSY9 194 aa13.23□□□□□ -0.29
SHKBP1-208ENST00000595726 TXLNGQ9NUQ3 528 aa13.23□□□□□ -0.29
SHKBP1-208ENST00000595726 SEC14L3Q9UDX4 400 aa13.23□□□□□ -0.29
SHKBP1-208ENST00000595726 ACSL5Q9ULC5 683 aa13.23□□□□□ -0.29
SHKBP1-208ENST00000595726 PCDHGB6Q9Y5F9 930 aa13.23□□□□□ -0.29
SHKBP1-208ENST00000595726 AP1M2Q9Y6Q5 423 aa13.23□□□□□ -0.29
SHKBP1-208ENST00000595726 PRRC2AP48634 2157 aaKnown RBP13.22□□□□□ -0.29
SHKBP1-208ENST00000595726 A0A0U1RQJ8 604 aa13.22□□□□□ -0.29
SHKBP1-208ENST00000595726 GRID2IPA4D2P6 1211 aa13.22□□□□□ -0.29
SHKBP1-208ENST00000595726 ITGAXP20702 1163 aa13.22□□□□□ -0.29
SHKBP1-208ENST00000595726 ALAS2P22557 587 aa13.22□□□□□ -0.29
SHKBP1-208ENST00000595726 PTPN3P26045 913 aa13.22□□□□□ -0.29
SHKBP1-208ENST00000595726 CTNNA2P26232 953 aa13.22□□□□□ -0.29
SHKBP1-208ENST00000595726 NAP1L1P55209 391 aaKnown RBP13.22□□□□□ -0.29
SHKBP1-208ENST00000595726 ARG2P78540 354 aa13.22□□□□□ -0.29
SHKBP1-208ENST00000595726 C3AR1Q16581 482 aa13.22□□□□□ -0.29
SHKBP1-208ENST00000595726 LDLRAP1Q5SW96 308 aa13.22□□□□□ -0.29
SHKBP1-208ENST00000595726 FAAH2Q6GMR7 532 aa13.22□□□□□ -0.29
SHKBP1-208ENST00000595726 BBS12Q6ZW61 710 aa13.22□□□□□ -0.29
SHKBP1-208ENST00000595726 KIAA1328Q86T90 577 aa13.22□□□□□ -0.29
SHKBP1-208ENST00000595726 FAM20CQ8IXL6 584 aa13.22□□□□□ -0.29
SHKBP1-208ENST00000595726 CFAP206Q8IYR0 622 aa13.22□□□□□ -0.29
SHKBP1-208ENST00000595726 ACVR1CQ8NER5 493 aa13.22□□□□□ -0.29
SHKBP1-208ENST00000595726 PROKR1Q8TCW9 393 aa13.22□□□□□ -0.29
SHKBP1-208ENST00000595726 TFB1MQ8WVM0 346 aaKnown RBP13.22□□□□□ -0.29
SHKBP1-208ENST00000595726 P3H4Q92791 437 aa13.22□□□□□ -0.29
SHKBP1-208ENST00000595726 IMP4Q96G21 291 aaKnown RBP13.22□□□□□ -0.29
SHKBP1-208ENST00000595726 LMF1Q96S06 567 aa13.22□□□□□ -0.29
SHKBP1-208ENST00000595726 GSX1Q9H4S2 264 aaPredicted RBP13.22□□□□□ -0.29
SHKBP1-208ENST00000595726 TINAGQ9UJW2 476 aa13.22□□□□□ -0.29
SHKBP1-208ENST00000595726 PCDHA3Q9Y5H8 950 aa13.22□□□□□ -0.29
SHKBP1-208ENST00000595726 VPS13CQ709C8 3753 aa13.22□□□□□ -0.29
SHKBP1-208ENST00000595726 PCM1Q15154 2024 aa13.22□□□□□ -0.29
SHKBP1-208ENST00000595726 APOC4-APOC2K7ER74 178 aa13.21□□□□□ -0.29
SHKBP1-208ENST00000595726 MATN2O00339 956 aa13.21□□□□□ -0.29
SHKBP1-208ENST00000595726 ZSCAN9O15535 394 aaPredicted RBP13.21□□□□□ -0.29
SHKBP1-208ENST00000595726 CLDN14O95500 239 aa13.21□□□□□ -0.29
SHKBP1-208ENST00000595726 APOC2P02655 101 aa13.21□□□□□ -0.29
SHKBP1-208ENST00000595726 ESRRAP11474 423 aaPredicted RBP13.21□□□□□ -0.29
SHKBP1-208ENST00000595726 NDUFS1P28331 727 aa13.21□□□□□ -0.29
SHKBP1-208ENST00000595726 TNFSF10P50591 281 aa13.21□□□□□ -0.29
SHKBP1-208ENST00000595726 COPS2P61201 443 aa13.21□□□□□ -0.29
SHKBP1-208ENST00000595726 CSNK1G2P78368 415 aa13.21□□□□□ -0.29
SHKBP1-208ENST00000595726 PRKG2Q13237 762 aa13.21□□□□□ -0.29
SHKBP1-208ENST00000595726 TEX44Q53QW1 395 aa13.21□□□□□ -0.29
SHKBP1-208ENST00000595726 MEX3BQ6ZN04 569 aaKnown RBP13.21□□□□□ -0.29
SHKBP1-208ENST00000595726 ADGRF3Q8IZF5 1079 aa13.21□□□□□ -0.29
SHKBP1-208ENST00000595726 C19orf47Q8N9M1 422 aaKnown RBP13.21□□□□□ -0.29
SHKBP1-208ENST00000595726 DDHD1Q8NEL9 900 aa13.21□□□□□ -0.29
SHKBP1-208ENST00000595726 OR11G2Q8NGC1 345 aa13.21□□□□□ -0.29
SHKBP1-208ENST00000595726 OR2L2Q8NH16 312 aa13.21□□□□□ -0.29
SHKBP1-208ENST00000595726 ZDHHC19Q8WVZ1 309 aaPredicted RBP13.21□□□□□ -0.29
SHKBP1-208ENST00000595726 TADA1Q96BN2 335 aa13.21□□□□□ -0.29
SHKBP1-208ENST00000595726 QKIQ96PU8 341 aaKnown RBP eCLIP13.21□□□□□ -0.29
SHKBP1-208ENST00000595726 SPOCK3Q9BQ16 436 aa13.21□□□□□ -0.29
SHKBP1-208ENST00000595726 TMEM121Q9BTD3 319 aa13.21□□□□□ -0.29
SHKBP1-208ENST00000595726 HEMGNQ9BXL5 484 aa13.21□□□□□ -0.29
SHKBP1-208ENST00000595726 ZCCHC2Q9C0B9 1178 aaKnown RBP13.21□□□□□ -0.29
SHKBP1-208ENST00000595726 SLC25A51Q9H1U9 297 aa13.21□□□□□ -0.29
SHKBP1-208ENST00000595726 SOX17Q9H6I2 414 aaPredicted RBP13.21□□□□□ -0.29
SHKBP1-208ENST00000595726 IRAK4Q9NWZ3 460 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms