RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 CAPN12Q6ZSI9 719 aa14.56□□□□□ -0.08
UPF1-202ENST00000594243 STRA8Q7Z7C7 330 aa14.56□□□□□ -0.08
UPF1-202ENST00000594243 FAM45AQ8TCE6 357 aa14.56□□□□□ -0.08
UPF1-202ENST00000594243 CD200R1Q8TD46 325 aa14.56□□□□□ -0.08
UPF1-202ENST00000594243 KCNE4Q8WWG9 221 aa14.56□□□□□ -0.08
UPF1-202ENST00000594243 SLC22A18Q96BI1 424 aa14.56□□□□□ -0.08
UPF1-202ENST00000594243 SLC41A2Q96JW4 573 aa14.56□□□□□ -0.08
UPF1-202ENST00000594243 NDNQ99608 321 aa14.56□□□□□ -0.08
UPF1-202ENST00000594243 SLC30A3Q99726 388 aa14.56□□□□□ -0.08
UPF1-202ENST00000594243 DMGDHQ9UI17 866 aaKnown RBP14.56□□□□□ -0.08
UPF1-202ENST00000594243 LNPEPQ9UIQ6 1025 aa14.56□□□□□ -0.08
UPF1-202ENST00000594243 PLAGL1Q9UM63 463 aa14.56□□□□□ -0.08
UPF1-202ENST00000594243 VWA7Q9Y334 891 aa14.56□□□□□ -0.08
UPF1-202ENST00000594243 NFS1Q9Y697 457 aa14.56□□□□□ -0.08
UPF1-202ENST00000594243 ZFYVE26Q68DK2 2539 aa14.56□□□□□ -0.08
UPF1-202ENST00000594243 PIKFYVEQ9Y2I7 2098 aa14.56□□□□□ -0.08
UPF1-202ENST00000594243 WDFY3Q8IZQ1 3526 aa14.55□□□□□ -0.08
UPF1-202ENST00000594243 ISM1B1AKI9 464 aa14.55□□□□□ -0.08
UPF1-202ENST00000594243 RASGRF2O14827 1237 aa14.55□□□□□ -0.08
UPF1-202ENST00000594243 ZBTB14O43829 449 aa14.55□□□□□ -0.08
UPF1-202ENST00000594243 PSIP1O75475 530 aaKnown RBP14.55□□□□□ -0.08
UPF1-202ENST00000594243 SPAG6O75602 509 aa14.55□□□□□ -0.08
UPF1-202ENST00000594243 CATP04040 527 aaKnown RBP14.55□□□□□ -0.08
UPF1-202ENST00000594243 CHRM5P08912 532 aaPredicted RBP14.55□□□□□ -0.08
UPF1-202ENST00000594243 PKLRP30613 574 aa14.55□□□□□ -0.08
UPF1-202ENST00000594243 RGS4P49798 205 aa14.55□□□□□ -0.08
UPF1-202ENST00000594243 ACY1Q03154 408 aa14.55□□□□□ -0.08
UPF1-202ENST00000594243 PDAP1Q13442 181 aaKnown RBP14.55□□□□□ -0.08
UPF1-202ENST00000594243 CUL1Q13616 776 aa14.55□□□□□ -0.08
UPF1-202ENST00000594243 GRB7Q14451 532 aa14.55□□□□□ -0.08
UPF1-202ENST00000594243 KIR2DS3Q14952 304 aa14.55□□□□□ -0.08
UPF1-202ENST00000594243 HECTD2Q5U5R9 776 aa14.55□□□□□ -0.08
UPF1-202ENST00000594243 ANKS6Q68DC2 871 aa14.55□□□□□ -0.08
UPF1-202ENST00000594243 BPHLQ86WA6 291 aaPredicted RBP14.55□□□□□ -0.08
UPF1-202ENST00000594243 GPATCH11Q8N954 259 aa14.55□□□□□ -0.08
UPF1-202ENST00000594243 OR2L8Q8NGY9 312 aa14.55□□□□□ -0.08
UPF1-202ENST00000594243 GIMAP7Q8NHV1 300 aa14.55□□□□□ -0.08
UPF1-202ENST00000594243 OR6C1Q96RD1 312 aa14.55□□□□□ -0.08
UPF1-202ENST00000594243 NRTNQ99748 197 aa14.55□□□□□ -0.08
UPF1-202ENST00000594243 MENTQ9BUN1 341 aa14.55□□□□□ -0.08
UPF1-202ENST00000594243 PDE7BQ9NP56 450 aa14.55□□□□□ -0.08
UPF1-202ENST00000594243 ZDHHC18Q9NUE0 388 aa14.55□□□□□ -0.08
UPF1-202ENST00000594243 SIDT1Q9NXL6 827 aaKnown RBP14.55□□□□□ -0.08
UPF1-202ENST00000594243 TXNDC16Q9P2K2 825 aa14.55□□□□□ -0.08
UPF1-202ENST00000594243 SLC17A6Q9P2U8 582 aa14.55□□□□□ -0.08
UPF1-202ENST00000594243 TSR3Q9UJK0 312 aaKnown RBP14.55□□□□□ -0.08
UPF1-202ENST00000594243 B3GALT1Q9Y5Z6 326 aa14.55□□□□□ -0.08
UPF1-202ENST00000594243 DMXL2Q8TDJ6 3036 aa14.55□□□□□ -0.08
UPF1-202ENST00000594243 TCRBV9S1A1TA0A576 114 aa14.54□□□□□ -0.08
UPF1-202ENST00000594243 SLC9B1P1A6NJY1 282 aa14.54□□□□□ -0.08
UPF1-202ENST00000594243 STMND1H3BQB6 276 aa14.54□□□□□ -0.08
UPF1-202ENST00000594243 LIPCP11150 499 aa14.54□□□□□ -0.08
UPF1-202ENST00000594243 MCM3P25205 808 aa14.54□□□□□ -0.08
UPF1-202ENST00000594243 MAP4P27816 1152 aaKnown RBP14.54□□□□□ -0.08
UPF1-202ENST00000594243 SH3BP2P78314 561 aa14.54□□□□□ -0.08
UPF1-202ENST00000594243 RBM20Q5T481 1227 aaKnown RBP14.54□□□□□ -0.08
UPF1-202ENST00000594243 BROXQ5VW32 411 aa14.54□□□□□ -0.08
UPF1-202ENST00000594243 SPESP1Q6UW49 350 aa14.54□□□□□ -0.08
UPF1-202ENST00000594243 CYHR1Q6ZMK1 362 aa14.54□□□□□ -0.08
UPF1-202ENST00000594243 CPNE9Q8IYJ1 553 aa14.54□□□□□ -0.08
UPF1-202ENST00000594243 D2HGDHQ8N465 521 aa14.54□□□□□ -0.08
UPF1-202ENST00000594243 IFT81Q8WYA0 676 aa14.54□□□□□ -0.08
UPF1-202ENST00000594243 NAF1Q96HR8 494 aaKnown RBP14.54□□□□□ -0.08
UPF1-202ENST00000594243 OR2A14Q96R47 310 aa14.54□□□□□ -0.08
UPF1-202ENST00000594243 CTRCQ99895 268 aa14.54□□□□□ -0.08
UPF1-202ENST00000594243 PITPNM3Q9BZ71 974 aa14.54□□□□□ -0.08
UPF1-202ENST00000594243 TWSG1Q9GZX9 223 aa14.54□□□□□ -0.08
UPF1-202ENST00000594243 SYTL2Q9HCH5 934 aa14.54□□□□□ -0.08
UPF1-202ENST00000594243 LRRC4CQ9HCJ2 640 aa14.54□□□□□ -0.08
UPF1-202ENST00000594243 SOHLH2Q9NX45 425 aa14.54□□□□□ -0.08
UPF1-202ENST00000594243 FOXJ2Q9P0K8 574 aa14.54□□□□□ -0.08
UPF1-202ENST00000594243 SPATA7Q9P0W8 599 aa14.54□□□□□ -0.08
UPF1-202ENST00000594243 RUVBL2Q9Y230 463 aaKnown RBP14.54□□□□□ -0.08
UPF1-202ENST00000594243 PKD1L2Q7Z442 2459 aa14.53□□□□□ -0.08
UPF1-202ENST00000594243 IQCJ-SCHIP1C9J366 451 aaPredicted RBP14.53□□□□□ -0.08
UPF1-202ENST00000594243 GFYI3L273 518 aa14.53□□□□□ -0.08
UPF1-202ENST00000594243 KLK10O43240 276 aa14.53□□□□□ -0.08
UPF1-202ENST00000594243 FGF5P12034 268 aa14.53□□□□□ -0.08
UPF1-202ENST00000594243 UGT2B7P16662 529 aa14.53□□□□□ -0.08
UPF1-202ENST00000594243 STX2P32856 288 aa14.53□□□□□ -0.08
UPF1-202ENST00000594243 HSD17B2P37059 387 aa14.53□□□□□ -0.08
UPF1-202ENST00000594243 ABCG1P45844 678 aa14.53□□□□□ -0.08
UPF1-202ENST00000594243 BDKRB1P46663 353 aa14.53□□□□□ -0.08
UPF1-202ENST00000594243 CDKN2DP55273 166 aa14.53□□□□□ -0.08
UPF1-202ENST00000594243 GPX6P59796 221 aa14.53□□□□□ -0.08
UPF1-202ENST00000594243 TIAL1Q01085 375 aaKnown RBP eCLIP14.53□□□□□ -0.08
UPF1-202ENST00000594243 SLC5A12Q1EHB4 618 aa14.53□□□□□ -0.08
UPF1-202ENST00000594243 PAQR3Q6TCH7 311 aa14.53□□□□□ -0.08
UPF1-202ENST00000594243 ZC3HC1Q86WB0 502 aaKnown RBP14.53□□□□□ -0.08
UPF1-202ENST00000594243 PPP1R3BQ86XI6 285 aa14.53□□□□□ -0.08
UPF1-202ENST00000594243 MYO1HQ8N1T3 1032 aa14.53□□□□□ -0.08
UPF1-202ENST00000594243 FBXO15Q8NCQ5 510 aaPredicted RBP14.53□□□□□ -0.08
UPF1-202ENST00000594243 OR9A1PQ8NGU1 263 aa14.53□□□□□ -0.08
UPF1-202ENST00000594243 HMGCLL1Q8TB92 370 aa14.53□□□□□ -0.08
UPF1-202ENST00000594243 EEF1AKMT1Q8WVE0 214 aa14.53□□□□□ -0.08
UPF1-202ENST00000594243 ASB11Q8WXH4 323 aa14.53□□□□□ -0.08
UPF1-202ENST00000594243 TRAPPC9Q96Q05 1148 aa14.53□□□□□ -0.08
UPF1-202ENST00000594243 CPNE1Q99829 537 aa14.53□□□□□ -0.08
UPF1-202ENST00000594243 APMAPQ9HDC9 416 aa14.53□□□□□ -0.08
UPF1-202ENST00000594243 SPHK1Q9NYA1 384 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms