RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 TMEM135Q86UB9 458 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 CLEC4FQ8N1N0 589 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 SYNPOQ8N3V7 929 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 OR2A12Q8NGT7 310 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 FAM81AQ8TBF8 368 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 SEMA3GQ9NS98 782 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 LHX3Q9UBR4 397 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 ZNF229Q9UJW7 825 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 POLR3HQ9Y535 204 aaPredicted RBP9.62□□□□□ -0.87
LIG3-216ENST00000593099 NME7Q9Y5B8 376 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 KNL1Q8NG31 2342 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 FAM221BA6H8Z2 402 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 KLK3P07288 261 aaPredicted RBP9.62□□□□□ -0.87
LIG3-216ENST00000593099 UQCRBP14927 111 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 MANFP55145 182 aaKnown RBP9.62□□□□□ -0.87
LIG3-216ENST00000593099 ARHGAP8P85298 464 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 C2orf80Q0P641 193 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 SPATA19Q7Z5L4 167 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 KIF2BQ8N4N8 673 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 DENND1AQ8TEH3 1009 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 TWIST2Q8WVJ9 160 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 NDC1Q9BTX1 674 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 PIF1Q9H611 641 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 CAAP1Q9H8G2 361 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 POPDC3Q9HBV1 291 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 SPO11Q9Y5K1 396 aa9.62□□□□□ -0.87
LIG3-216ENST00000593099 TCRBV5S1A1TA0A578 114 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 CDC7O00311 574 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 OR1I1O60431 355 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 NPHS1O60500 1241 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 SNRPB2P08579 225 aaKnown RBP9.61□□□□□ -0.87
LIG3-216ENST00000593099 PIM1P11309 404 aaPredicted RBP9.61□□□□□ -0.87
LIG3-216ENST00000593099 LEPRP48357 1165 aaKnown RBP9.61□□□□□ -0.87
LIG3-216ENST00000593099 CCR4P51679 360 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 SGSHP51688 502 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 PLA2G16P53816 162 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 C9orf64Q5T6V5 341 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 PSAPL1Q6NUJ1 521 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 STK32CQ86UX6 486 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 SLC44A3Q8N4M1 653 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 POU5F2Q8N7G0 328 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 C19orf60Q96EN9 201 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 NSMCE2Q96MF7 247 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 PRKAG3Q9UGI9 489 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 SERTAD3Q9UJW9 196 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 LOXHD1Q8IVV2 1947 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 KHNYNO15037 678 aaKnown RBP9.61□□□□□ -0.87
LIG3-216ENST00000593099 DUX1O43812 170 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 PRLP01236 227 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 APOA1P02647 267 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 POLR2CP19387 275 aaPredicted RBP9.61□□□□□ -0.87
LIG3-216ENST00000593099 CD38P28907 300 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 CRATP43155 626 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 ARSDP51689 593 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 SIX1Q15475 284 aaPredicted RBP9.61□□□□□ -0.87
LIG3-216ENST00000593099 KIAA0895LQ68EN5 471 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 C16orf62Q7Z3J2 963 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 PRSS58Q8IYP2 241 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 SAMD14Q8IZD0 417 aaPredicted RBP9.61□□□□□ -0.87
LIG3-216ENST00000593099 DTD2Q96FN9 168 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 RBM18Q96H35 190 aaKnown RBP9.61□□□□□ -0.87
LIG3-216ENST00000593099 GDF15Q99988 308 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 MARK1Q9P0L2 795 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 VPS4AQ9UN37 437 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 WBP11Q9Y2W2 641 aaKnown RBP9.61□□□□□ -0.87
LIG3-216ENST00000593099 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 TMEM150CB9EJG8 249 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 MBTPS2O43462 519 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 TPST1O60507 370 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 PENKP01210 267 aaPredicted RBP9.61□□□□□ -0.87
LIG3-216ENST00000593099 DNAJB1P25685 340 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 GTF2E2P29084 291 aaKnown RBP9.61□□□□□ -0.87
LIG3-216ENST00000593099 RGRP47804 291 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 CXorf57Q6NSI4 855 aaKnown RBP9.61□□□□□ -0.87
LIG3-216ENST00000593099 TMEFF1Q8IYR6 380 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 DEFB107AQ8IZN7 70 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 SUN5Q8TC36 379 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 DCAKDQ8WVC6 231 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 KIAA1191Q96A73 305 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 PANX1Q96RD7 426 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 SLCO1B3Q9NPD5 702 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 ARMCX1Q9P291 453 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 FBXW2Q9UKT8 454 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 SLC22A14Q9Y267 594 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 TRIM64CA6NLI5 447 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 C2orf74A8MZ97 194 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 SEMA3DO95025 777 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 MPC1LP0DKB6 136 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 SEPHS1P49903 392 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 CYP4F3Q08477 520 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 TOMM20Q15388 145 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 DPY19L2P1Q6NXN4 242 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 IGDCC3Q8IVU1 814 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 BANPQ8N9N5 519 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 FAM174AQ8TBP5 190 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 SPPL2AQ8TCT8 520 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 FGF14Q92915 247 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 NAF1Q96HR8 494 aaKnown RBP9.61□□□□□ -0.87
LIG3-216ENST00000593099 VN1R3Q9BXE9 311 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 ADGRE2Q9UHX3 823 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms