RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 SLC16A9Q7RTY1 509 aa4.11□□□□□ -1.75
SMCHD1-204ENST00000581226 TMPRSS11BQ86T26 416 aa4.11□□□□□ -1.75
SMCHD1-204ENST00000581226 KCTD6Q8NC69 237 aa4.11□□□□□ -1.75
SMCHD1-204ENST00000581226 KBTBD8Q8NFY9 601 aa4.11□□□□□ -1.75
SMCHD1-204ENST00000581226 DHX58Q96C10 678 aa4.11□□□□□ -1.75
SMCHD1-204ENST00000581226 LRR1Q96L50 414 aa4.11□□□□□ -1.75
SMCHD1-204ENST00000581226 GPR88Q9GZN0 384 aa4.11□□□□□ -1.75
SMCHD1-204ENST00000581226 NOL11Q9H8H0 719 aaKnown RBP4.11□□□□□ -1.75
SMCHD1-204ENST00000581226 ANKZF1Q9H8Y5 726 aa4.11□□□□□ -1.75
SMCHD1-204ENST00000581226 CNOT10Q9H9A5 744 aaKnown RBP4.11□□□□□ -1.75
SMCHD1-204ENST00000581226 PIH1D3Q9NQM4 214 aaKnown RBP4.11□□□□□ -1.75
SMCHD1-204ENST00000581226 PRMT7Q9NVM4 692 aaPredicted RBP4.11□□□□□ -1.75
SMCHD1-204ENST00000581226 NKIRAS2Q9NYR9 191 aa4.11□□□□□ -1.75
SMCHD1-204ENST00000581226 CACNG4Q9UBN1 327 aa4.11□□□□□ -1.75
SMCHD1-204ENST00000581226 DAPK2Q9UIK4 370 aa4.11□□□□□ -1.75
SMCHD1-204ENST00000581226 PCDH11YQ9BZA8 1340 aa4.11□□□□□ -1.75
SMCHD1-204ENST00000581226 KAT6BQ8WYB5 2073 aa4.1□□□□□ -1.75
SMCHD1-204ENST00000581226 GIMAP1-GIMAP5A0A087WTJ2 511 aa4.1□□□□□ -1.75
SMCHD1-204ENST00000581226 EDDM13A0A1B0GTR0 161 aa4.1□□□□□ -1.75
SMCHD1-204ENST00000581226 TRBC2A0A5B9 178 aa4.1□□□□□ -1.75
SMCHD1-204ENST00000581226 ANKRD61A6NGH8 418 aa4.1□□□□□ -1.75
SMCHD1-204ENST00000581226 TRMUO75648 421 aaKnown RBP4.1□□□□□ -1.75
SMCHD1-204ENST00000581226 GAS8-AS1O95177 125 aa4.1□□□□□ -1.75
SMCHD1-204ENST00000581226 HMBSP08397 361 aa4.1□□□□□ -1.75
SMCHD1-204ENST00000581226 PTPN3P26045 913 aa4.1□□□□□ -1.75
SMCHD1-204ENST00000581226 ALDH4A1P30038 563 aa4.1□□□□□ -1.75
SMCHD1-204ENST00000581226 HNRNPKP61978 463 aaKnown RBP eCLIP4.1□□□□□ -1.75
SMCHD1-204ENST00000581226 CDR2Q01850 454 aa4.1□□□□□ -1.75
SMCHD1-204ENST00000581226 AIMP1Q12904 312 aaKnown RBP4.1□□□□□ -1.75
SMCHD1-204ENST00000581226 RRS1Q15050 365 aaKnown RBP4.1□□□□□ -1.75
SMCHD1-204ENST00000581226 P2RY6Q15077 328 aa4.1□□□□□ -1.75
SMCHD1-204ENST00000581226 KLHL26Q53HC5 615 aa4.1□□□□□ -1.75
SMCHD1-204ENST00000581226 SYT14P1Q58G82 188 aa4.1□□□□□ -1.75
SMCHD1-204ENST00000581226 ERMARDQ5T6L9 678 aa4.1□□□□□ -1.75
SMCHD1-204ENST00000581226 ZNF790Q6PG37 636 aa4.1□□□□□ -1.75
SMCHD1-204ENST00000581226 FAM198BQ6UWH4 519 aa4.1□□□□□ -1.75
SMCHD1-204ENST00000581226 PLPPR4Q7Z2D5 763 aa4.1□□□□□ -1.75
SMCHD1-204ENST00000581226 CDK20Q8IZL9 346 aa4.1□□□□□ -1.75
SMCHD1-204ENST00000581226 TTC30BQ8N4P2 665 aa4.1□□□□□ -1.75
SMCHD1-204ENST00000581226 CCDC89Q8N998 374 aa4.1□□□□□ -1.75
SMCHD1-204ENST00000581226 WDSUB1Q8N9V3 476 aa4.1□□□□□ -1.75
SMCHD1-204ENST00000581226 ZNF248Q8NDW4 579 aa4.1□□□□□ -1.75
SMCHD1-204ENST00000581226 ATL1Q8WXF7 558 aa4.1□□□□□ -1.75
SMCHD1-204ENST00000581226 SYN2Q92777 582 aaPredicted RBP4.1□□□□□ -1.75
SMCHD1-204ENST00000581226 GIMAP5Q96F15 307 aa4.1□□□□□ -1.75
SMCHD1-204ENST00000581226 MIS12Q9H081 205 aa4.1□□□□□ -1.75
SMCHD1-204ENST00000581226 Q9N2K0 584 aa4.1□□□□□ -1.75
SMCHD1-204ENST00000581226 INTS9Q9NV88 658 aaKnown RBP4.1□□□□□ -1.75
SMCHD1-204ENST00000581226 SPHK1Q9NYA1 384 aa4.1□□□□□ -1.75
SMCHD1-204ENST00000581226 KCNK7Q9Y2U2 307 aa4.1□□□□□ -1.75
SMCHD1-204ENST00000581226 PSMD14O00487 310 aa4.09□□□□□ -1.75
SMCHD1-204ENST00000581226 TADA2AO75478 443 aa4.09□□□□□ -1.75
SMCHD1-204ENST00000581226 NADKO95544 446 aaPredicted RBP4.09□□□□□ -1.75
SMCHD1-204ENST00000581226 HSPA8P11142 646 aaKnown RBP4.09□□□□□ -1.75
SMCHD1-204ENST00000581226 CEACAM1P13688 526 aa4.09□□□□□ -1.75
SMCHD1-204ENST00000581226 CA6P23280 308 aa4.09□□□□□ -1.75
SMCHD1-204ENST00000581226 JAK1P23458 1154 aa4.09□□□□□ -1.75
SMCHD1-204ENST00000581226 KRT20P35900 424 aa4.09□□□□□ -1.75
SMCHD1-204ENST00000581226 MNDAP41218 407 aa4.09□□□□□ -1.75
SMCHD1-204ENST00000581226 WNT5AP41221 380 aa4.09□□□□□ -1.75
SMCHD1-204ENST00000581226 NUCB1Q02818 461 aa4.09□□□□□ -1.75
SMCHD1-204ENST00000581226 RALGDSQ12967 914 aa4.09□□□□□ -1.75
SMCHD1-204ENST00000581226 C11orf63Q6NUN7 778 aa4.09□□□□□ -1.75
SMCHD1-204ENST00000581226 MFSD12Q6NUT3 480 aa4.09□□□□□ -1.75
SMCHD1-204ENST00000581226 ARHGAP22Q7Z5H3 698 aa4.09□□□□□ -1.75
SMCHD1-204ENST00000581226 NUDT13Q86X67 352 aa4.09□□□□□ -1.75
SMCHD1-204ENST00000581226 LSMEM1Q8N8F7 131 aa4.09□□□□□ -1.75
SMCHD1-204ENST00000581226 DDHD1Q8NEL9 900 aa4.09□□□□□ -1.75
SMCHD1-204ENST00000581226 OR11H4Q8NGC9 324 aa4.09□□□□□ -1.75
SMCHD1-204ENST00000581226 CTCFLQ8NI51 663 aaPredicted RBP4.09□□□□□ -1.75
SMCHD1-204ENST00000581226 PHLDA1Q8WV24 401 aaPredicted RBP4.09□□□□□ -1.75
SMCHD1-204ENST00000581226 FNBP1Q96RU3 617 aa4.09□□□□□ -1.75
SMCHD1-204ENST00000581226 URM1Q9BTM9 101 aaKnown RBP4.09□□□□□ -1.75
SMCHD1-204ENST00000581226 MYNNQ9NPC7 610 aa4.09□□□□□ -1.75
SMCHD1-204ENST00000581226 GKN1Q9NS71 199 aa4.09□□□□□ -1.75
SMCHD1-204ENST00000581226 FGF21Q9NSA1 209 aa4.09□□□□□ -1.75
SMCHD1-204ENST00000581226 C2orf42Q9NWW7 574 aa4.09□□□□□ -1.75
SMCHD1-204ENST00000581226 TERF2IPQ9NYB0 399 aa4.09□□□□□ -1.75
SMCHD1-204ENST00000581226 BCCIPQ9P287 314 aaKnown RBP eCLIP4.09□□□□□ -1.75
SMCHD1-204ENST00000581226 ABT1Q9ULW3 272 aaKnown RBP4.09□□□□□ -1.75
SMCHD1-204ENST00000581226 A0A1W2PPM1 405 aa4.08□□□□□ -1.76
SMCHD1-204ENST00000581226 SPRY1O43609 319 aaPredicted RBP4.08□□□□□ -1.76
SMCHD1-204ENST00000581226 IGHV2-70P01814 119 aa4.08□□□□□ -1.76
SMCHD1-204ENST00000581226 RAB40ALP0C0E4 278 aa4.08□□□□□ -1.76
SMCHD1-204ENST00000581226 MPZP25189 248 aa4.08□□□□□ -1.76
SMCHD1-204ENST00000581226 MC5RP33032 325 aa4.08□□□□□ -1.76
SMCHD1-204ENST00000581226 PCGF2P35227 344 aa4.08□□□□□ -1.76
SMCHD1-204ENST00000581226 MAPK12P53778 367 aa4.08□□□□□ -1.76
SMCHD1-204ENST00000581226 CSE1LP55060 971 aaKnown RBP4.08□□□□□ -1.76
SMCHD1-204ENST00000581226 HERV-K104P61576 105 aa4.08□□□□□ -1.76
SMCHD1-204ENST00000581226 MAT1AQ00266 395 aaKnown RBP4.08□□□□□ -1.76
SMCHD1-204ENST00000581226 PMP22Q01453 160 aa4.08□□□□□ -1.76
SMCHD1-204ENST00000581226 ZNF415Q09FC8 603 aa4.08□□□□□ -1.76
SMCHD1-204ENST00000581226 PTPRCAPQ14761 206 aa4.08□□□□□ -1.76
SMCHD1-204ENST00000581226 ODF4Q2M2E3 257 aa4.08□□□□□ -1.76
SMCHD1-204ENST00000581226 CRY2Q49AN0 593 aa4.08□□□□□ -1.76
SMCHD1-204ENST00000581226 NOTCH2NLQ7Z3S9 236 aa4.08□□□□□ -1.76
SMCHD1-204ENST00000581226 RTN4RL2Q86UN3 420 aa4.08□□□□□ -1.76
SMCHD1-204ENST00000581226 PIGZQ86VD9 579 aa4.08□□□□□ -1.76
SMCHD1-204ENST00000581226 IQCHQ86VS3 1027 aa4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms