RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 PHF21BQ96EK2 531 aa10.44□□□□□ -0.74
SS18-213ENST00000579640 PKP4Q99569 1192 aa10.44□□□□□ -0.74
SS18-213ENST00000579640 ERVK-6Q9BXR3 956 aa10.44□□□□□ -0.74
SS18-213ENST00000579640 STN1Q9H668 368 aaKnown RBP10.44□□□□□ -0.74
SS18-213ENST00000579640 GAREM1Q9H706 876 aa10.44□□□□□ -0.74
SS18-213ENST00000579640 KIR3DX1Q9H7L2 352 aa10.44□□□□□ -0.74
SS18-213ENST00000579640 MANSC1Q9H8J5 431 aa10.44□□□□□ -0.74
SS18-213ENST00000579640 ZNF624Q9P2J8 865 aaPredicted RBP10.44□□□□□ -0.74
SS18-213ENST00000579640 LNPEPQ9UIQ6 1025 aa10.44□□□□□ -0.74
SS18-213ENST00000579640 GMEB2Q9UKD1 530 aa10.44□□□□□ -0.74
SS18-213ENST00000579640 CFAP20Q9Y6A4 193 aaKnown RBP10.44□□□□□ -0.74
SS18-213ENST00000579640 TMEM131Q92545 1883 aa10.44□□□□□ -0.74
SS18-213ENST00000579640 PATE3B3GLJ2 98 aa10.44□□□□□ -0.74
SS18-213ENST00000579640 TMEM114B3SHH9 223 aa10.44□□□□□ -0.74
SS18-213ENST00000579640 SDC3O75056 442 aa10.44□□□□□ -0.74
SS18-213ENST00000579640 SNUPNO95149 360 aaKnown RBP10.44□□□□□ -0.74
SS18-213ENST00000579640 VIPP01282 170 aa10.44□□□□□ -0.74
SS18-213ENST00000579640 BGNP21810 368 aa10.44□□□□□ -0.74
SS18-213ENST00000579640 SLC19A1P41440 591 aa10.44□□□□□ -0.74
SS18-213ENST00000579640 UBE2IP63279 158 aaKnown RBP10.44□□□□□ -0.74
SS18-213ENST00000579640 GRB7Q14451 532 aa10.44□□□□□ -0.74
SS18-213ENST00000579640 CHI3L2Q15782 390 aa10.44□□□□□ -0.74
SS18-213ENST00000579640 CCSMST1Q4G0I0 132 aa10.44□□□□□ -0.74
SS18-213ENST00000579640 CFAP157Q5JU67 520 aa10.44□□□□□ -0.74
SS18-213ENST00000579640 ZNF678Q5SXM1 525 aa10.44□□□□□ -0.74
SS18-213ENST00000579640 ANKS6Q68DC2 871 aa10.44□□□□□ -0.74
SS18-213ENST00000579640 DUS1LQ6P1R4 473 aaKnown RBP10.44□□□□□ -0.74
SS18-213ENST00000579640 OGFOD3Q6PK18 319 aa10.44□□□□□ -0.74
SS18-213ENST00000579640 KLHDC8AQ8IYD2 350 aa10.44□□□□□ -0.74
SS18-213ENST00000579640 NAGSQ8N159 534 aa10.44□□□□□ -0.74
SS18-213ENST00000579640 SUMF1Q8NBK3 374 aa10.44□□□□□ -0.74
SS18-213ENST00000579640 OR6Y1Q8NGX8 325 aa10.44□□□□□ -0.74
SS18-213ENST00000579640 CAMK1GQ96NX5 476 aa10.44□□□□□ -0.74
SS18-213ENST00000579640 TMEM237Q96Q45 408 aa10.44□□□□□ -0.74
SS18-213ENST00000579640 HGH1Q9BTY7 390 aa10.44□□□□□ -0.74
SS18-213ENST00000579640 DUSP23Q9BVJ7 150 aa10.44□□□□□ -0.74
SS18-213ENST00000579640 CAPS2Q9BXY5 557 aa10.44□□□□□ -0.74
SS18-213ENST00000579640 STOX2Q9P2F5 926 aaPredicted RBP10.44□□□□□ -0.74
SS18-213ENST00000579640 CPNE7Q9UBL6 633 aa10.44□□□□□ -0.74
SS18-213ENST00000579640 TDRKHQ9Y2W6 561 aaKnown RBP10.44□□□□□ -0.74
SS18-213ENST00000579640 ANKRD12Q6UB98 2062 aa10.43□□□□□ -0.74
SS18-213ENST00000579640 ARHGEF17Q96PE2 2063 aaPredicted RBP10.43□□□□□ -0.74
SS18-213ENST00000579640 B4DGG1 531 aa10.43□□□□□ -0.74
SS18-213ENST00000579640 TAPBPO15533 448 aa10.43□□□□□ -0.74
SS18-213ENST00000579640 NPHS1O60500 1241 aa10.43□□□□□ -0.74
SS18-213ENST00000579640 STK16O75716 305 aa10.43□□□□□ -0.74
SS18-213ENST00000579640 RPS17P08708 135 aaKnown RBP10.43□□□□□ -0.74
SS18-213ENST00000579640 ALPPL2P10696 532 aa10.43□□□□□ -0.74
SS18-213ENST00000579640 ERGP11308 486 aa10.43□□□□□ -0.74
SS18-213ENST00000579640 CCND1P24385 295 aa10.43□□□□□ -0.74
SS18-213ENST00000579640 IMPA1P29218 277 aa10.43□□□□□ -0.74
SS18-213ENST00000579640 EEF1DP29692 281 aaKnown RBP10.43□□□□□ -0.74
SS18-213ENST00000579640 FASLGP48023 281 aa10.43□□□□□ -0.74
SS18-213ENST00000579640 SLC6A12P48065 614 aa10.43□□□□□ -0.74
SS18-213ENST00000579640 PIK3CGP48736 1102 aa10.43□□□□□ -0.74
SS18-213ENST00000579640 RAB28P51157 221 aa10.43□□□□□ -0.74
SS18-213ENST00000579640 NAGLUP54802 743 aa10.43□□□□□ -0.74
SS18-213ENST00000579640 BNIP3Q12983 259 aa10.43□□□□□ -0.74
SS18-213ENST00000579640 PRKG2Q13237 762 aa10.43□□□□□ -0.74
SS18-213ENST00000579640 STX3Q13277 289 aa10.43□□□□□ -0.74
SS18-213ENST00000579640 CYP2A13Q16696 494 aa10.43□□□□□ -0.74
SS18-213ENST00000579640 C6orf132Q5T0Z8 1188 aa10.43□□□□□ -0.74
SS18-213ENST00000579640 AGTRAPQ6RW13 159 aa10.43□□□□□ -0.74
SS18-213ENST00000579640 MBOAT1Q6ZNC8 495 aa10.43□□□□□ -0.74
SS18-213ENST00000579640 LRRC70Q7Z2Q7 622 aa10.43□□□□□ -0.74
SS18-213ENST00000579640 KANSL1Q7Z3B3 1105 aa10.43□□□□□ -0.74
SS18-213ENST00000579640 C17orf82Q86X59 251 aaPredicted RBP10.43□□□□□ -0.74
SS18-213ENST00000579640 SLC25A45Q8N413 288 aa10.43□□□□□ -0.74
SS18-213ENST00000579640 SLC37A2Q8TED4 501 aa10.43□□□□□ -0.74
SS18-213ENST00000579640 SAP25Q8TEE9 199 aa10.43□□□□□ -0.74
SS18-213ENST00000579640 PPP4R1Q8TF05 950 aa10.43□□□□□ -0.74
SS18-213ENST00000579640 ZNF480Q8WV37 535 aa10.43□□□□□ -0.74
SS18-213ENST00000579640 ZNF75CPQ92670 426 aaPredicted RBP10.43□□□□□ -0.74
SS18-213ENST00000579640 ATOH1Q92858 354 aaPredicted RBP10.43□□□□□ -0.74
SS18-213ENST00000579640 CNDP1Q96KN2 507 aa10.43□□□□□ -0.74
SS18-213ENST00000579640 TMEM79Q9BSE2 394 aa10.43□□□□□ -0.74
SS18-213ENST00000579640 TRMOQ9BU70 441 aa10.43□□□□□ -0.74
SS18-213ENST00000579640 GATA5Q9BWX5 397 aaPredicted RBP10.43□□□□□ -0.74
SS18-213ENST00000579640 CD244Q9BZW8 370 aa10.43□□□□□ -0.74
SS18-213ENST00000579640 CAAP1Q9H8G2 361 aa10.43□□□□□ -0.74
SS18-213ENST00000579640 SLC40A1Q9NP59 571 aa10.43□□□□□ -0.74
SS18-213ENST00000579640 UCKL1Q9NWZ5 548 aa10.43□□□□□ -0.74
SS18-213ENST00000579640 NLGN3Q9NZ94 848 aa10.43□□□□□ -0.74
SS18-213ENST00000579640 KNL1Q8NG31 2342 aa10.43□□□□□ -0.74
SS18-213ENST00000579640 NOBOXO60393 691 aa10.42□□□□□ -0.74
SS18-213ENST00000579640 SUPT7LO94864 414 aa10.42□□□□□ -0.74
SS18-213ENST00000579640 SLC16A8O95907 504 aa10.42□□□□□ -0.74
SS18-213ENST00000579640 ZNF883P0CG24 379 aa10.42□□□□□ -0.74
SS18-213ENST00000579640 ENGP17813 658 aa10.42□□□□□ -0.74
SS18-213ENST00000579640 PKLRP30613 574 aa10.42□□□□□ -0.74
SS18-213ENST00000579640 SHMT2P34897 504 aa10.42□□□□□ -0.74
SS18-213ENST00000579640 HSPA7P48741 367 aa10.42□□□□□ -0.74
SS18-213ENST00000579640 ATXN3P54252 364 aaPredicted RBP10.42□□□□□ -0.74
SS18-213ENST00000579640 PNLIPRP1P54315 467 aa10.42□□□□□ -0.74
SS18-213ENST00000579640 GYS2P54840 703 aa10.42□□□□□ -0.74
SS18-213ENST00000579640 GALNT1Q10472 559 aaPredicted RBP10.42□□□□□ -0.74
SS18-213ENST00000579640 DEFB133Q30KQ1 61 aa10.42□□□□□ -0.74
SS18-213ENST00000579640 UNC50Q53HI1 259 aa10.42□□□□□ -0.74
SS18-213ENST00000579640 SYTL1Q8IYJ3 562 aa10.42□□□□□ -0.74
SS18-213ENST00000579640 CCNYL1Q8N7R7 359 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms