RNA–Protein interactions for RNA: ENST00000569916.1

CNOT1-220, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

TSL 3

Gene CNOT1, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-220ENST00000569916 LMNTD2Q8IXW0 634 aa12.6□□□□□ -0.39
CNOT1-220ENST00000569916 C19orf47Q8N9M1 422 aaKnown RBP12.6□□□□□ -0.39
CNOT1-220ENST00000569916 LINC01555Q8NAE3 123 aa12.6□□□□□ -0.39
CNOT1-220ENST00000569916 OR8K5Q8NH50 307 aa12.6□□□□□ -0.39
CNOT1-220ENST00000569916 GSDMBQ8TAX9 411 aa12.6□□□□□ -0.39
CNOT1-220ENST00000569916 SLC39A7Q92504 469 aa12.6□□□□□ -0.39
CNOT1-220ENST00000569916 WBP1Q96G27 269 aa12.6□□□□□ -0.39
CNOT1-220ENST00000569916 FAM167BQ9BTA0 163 aa12.6□□□□□ -0.39
CNOT1-220ENST00000569916 GALPQ9UBC7 116 aa12.6□□□□□ -0.39
CNOT1-220ENST00000569916 IL17BQ9UHF5 180 aa12.6□□□□□ -0.39
CNOT1-220ENST00000569916 MED16Q9Y2X0 877 aa12.6□□□□□ -0.39
CNOT1-220ENST00000569916 SMG1Q96Q15 3661 aaKnown RBP12.59□□□□□ -0.39
CNOT1-220ENST00000569916 A0A0J9YY10 115 aa12.59□□□□□ -0.39
CNOT1-220ENST00000569916 ZNF891A8MT65 544 aaPredicted RBP12.59□□□□□ -0.39
CNOT1-220ENST00000569916 E5RI56 91 aa12.59□□□□□ -0.39
CNOT1-220ENST00000569916 RASGRF2O14827 1237 aa12.59□□□□□ -0.39
CNOT1-220ENST00000569916 TP73O15350 636 aa12.59□□□□□ -0.39
CNOT1-220ENST00000569916 SCRG1O75711 98 aa12.59□□□□□ -0.39
CNOT1-220ENST00000569916 SEC31AO94979 1220 aaKnown RBP12.59□□□□□ -0.39
CNOT1-220ENST00000569916 C1orf105O95561 183 aa12.59□□□□□ -0.39
CNOT1-220ENST00000569916 MT-ND3P03897 115 aa12.59□□□□□ -0.39
CNOT1-220ENST00000569916 PRB1P04280 392 aa12.59□□□□□ -0.39
CNOT1-220ENST00000569916 ITGB2P05107 769 aa12.59□□□□□ -0.39
CNOT1-220ENST00000569916 CHRM3P20309 590 aa12.59□□□□□ -0.39
CNOT1-220ENST00000569916 F8A1P23610 371 aa12.59□□□□□ -0.39
CNOT1-220ENST00000569916 CLCN7P51798 805 aa12.59□□□□□ -0.39
CNOT1-220ENST00000569916 MPP1Q00013 466 aa12.59□□□□□ -0.39
CNOT1-220ENST00000569916 KIR2DS3Q14952 304 aa12.59□□□□□ -0.39
CNOT1-220ENST00000569916 ZIC1Q15915 447 aa12.59□□□□□ -0.39
CNOT1-220ENST00000569916 SLC5A12Q1EHB4 618 aa12.59□□□□□ -0.39
CNOT1-220ENST00000569916 LINC00303Q3SY05 128 aa12.59□□□□□ -0.39
CNOT1-220ENST00000569916 BBS9Q3SYG4 887 aa12.59□□□□□ -0.39
CNOT1-220ENST00000569916 CCSMST1Q4G0I0 132 aa12.59□□□□□ -0.39
CNOT1-220ENST00000569916 ACSBG2Q5FVE4 666 aa12.59□□□□□ -0.39
CNOT1-220ENST00000569916 HIBCHQ6NVY1 386 aaPredicted RBP12.59□□□□□ -0.39
CNOT1-220ENST00000569916 ZNF549Q6P9A3 640 aa12.59□□□□□ -0.39
CNOT1-220ENST00000569916 CNSTQ6PJW8 725 aa12.59□□□□□ -0.39
CNOT1-220ENST00000569916 CDHR3Q6ZTQ4 885 aa12.59□□□□□ -0.39
CNOT1-220ENST00000569916 TMEM126BQ8IUX1 230 aa12.59□□□□□ -0.39
CNOT1-220ENST00000569916 IGDCC3Q8IVU1 814 aa12.59□□□□□ -0.39
CNOT1-220ENST00000569916 ZBTB2Q8N680 514 aa12.59□□□□□ -0.39
CNOT1-220ENST00000569916 LMNTD1Q8N9Z9 388 aa12.59□□□□□ -0.39
CNOT1-220ENST00000569916 OR2L8Q8NGY9 312 aa12.59□□□□□ -0.39
CNOT1-220ENST00000569916 GIMAP7Q8NHV1 300 aa12.59□□□□□ -0.39
CNOT1-220ENST00000569916 CALML6Q8TD86 181 aa12.59□□□□□ -0.39
CNOT1-220ENST00000569916 SKA2Q8WVK7 121 aaPredicted RBP12.59□□□□□ -0.39
CNOT1-220ENST00000569916 STARD8Q92502 1023 aa12.59□□□□□ -0.39
CNOT1-220ENST00000569916 PWWP2AQ96N64 755 aa12.59□□□□□ -0.39
CNOT1-220ENST00000569916 IL17FQ96PD4 163 aa12.59□□□□□ -0.39
CNOT1-220ENST00000569916 SLC30A3Q99726 388 aa12.59□□□□□ -0.39
CNOT1-220ENST00000569916 EBNA1BP2Q99848 306 aaKnown RBP12.59□□□□□ -0.39
CNOT1-220ENST00000569916 WDR83Q9BRX9 315 aaKnown RBP12.59□□□□□ -0.39
CNOT1-220ENST00000569916 EFHD1Q9BUP0 239 aa12.59□□□□□ -0.39
CNOT1-220ENST00000569916 FANCEQ9HB96 536 aa12.59□□□□□ -0.39
CNOT1-220ENST00000569916 PLAC1Q9HBJ0 212 aa12.59□□□□□ -0.39
CNOT1-220ENST00000569916 TSR3Q9UJK0 312 aaKnown RBP12.59□□□□□ -0.39
CNOT1-220ENST00000569916 CROTQ9UKG9 612 aa12.59□□□□□ -0.39
CNOT1-220ENST00000569916 FBXO5Q9UKT4 447 aa12.59□□□□□ -0.39
CNOT1-220ENST00000569916 MRPS18BQ9Y676 258 aaKnown RBP12.59□□□□□ -0.39
CNOT1-220ENST00000569916 KRT87PA6NCN2 255 aa12.58□□□□□ -0.4
CNOT1-220ENST00000569916 ISM1B1AKI9 464 aa12.58□□□□□ -0.4
CNOT1-220ENST00000569916 TMEM150CB9EJG8 249 aa12.58□□□□□ -0.4
CNOT1-220ENST00000569916 SMAPO00193 183 aa12.58□□□□□ -0.4
CNOT1-220ENST00000569916 CPNE3O75131 537 aaKnown RBP12.58□□□□□ -0.4
CNOT1-220ENST00000569916 C1QL1O75973 258 aa12.58□□□□□ -0.4
CNOT1-220ENST00000569916 MATN4O95460 622 aa12.58□□□□□ -0.4
CNOT1-220ENST00000569916 TTC4O95801 387 aa12.58□□□□□ -0.4
CNOT1-220ENST00000569916 NTRK1P04629 796 aa12.58□□□□□ -0.4
CNOT1-220ENST00000569916 ERVK-10P10266 1014 aa12.58□□□□□ -0.4
CNOT1-220ENST00000569916 CD9P21926 228 aa12.58□□□□□ -0.4
CNOT1-220ENST00000569916 DLSTP36957 453 aa12.58□□□□□ -0.4
CNOT1-220ENST00000569916 GABRA4P48169 554 aa12.58□□□□□ -0.4
CNOT1-220ENST00000569916 ITGA8P53708 1063 aa12.58□□□□□ -0.4
CNOT1-220ENST00000569916 ETF1P62495 437 aaKnown RBP12.58□□□□□ -0.4
CNOT1-220ENST00000569916 LY6DQ14210 128 aa12.58□□□□□ -0.4
CNOT1-220ENST00000569916 HSP90AA5PQ58FG0 334 aa12.58□□□□□ -0.4
CNOT1-220ENST00000569916 SPANXN3Q5MJ09 141 aa12.58□□□□□ -0.4
CNOT1-220ENST00000569916 PRAMEF17Q5VTA0 474 aa12.58□□□□□ -0.4
CNOT1-220ENST00000569916 TAX1BP1Q86VP1 789 aa12.58□□□□□ -0.4
CNOT1-220ENST00000569916 SPNS2Q8IVW8 549 aa12.58□□□□□ -0.4
CNOT1-220ENST00000569916 OR1L3Q8NH93 324 aa12.58□□□□□ -0.4
CNOT1-220ENST00000569916 CT55Q8WUE5 264 aa12.58□□□□□ -0.4
CNOT1-220ENST00000569916 KCNJ9Q92806 393 aa12.58□□□□□ -0.4
CNOT1-220ENST00000569916 EXTL1Q92935 676 aa12.58□□□□□ -0.4
CNOT1-220ENST00000569916 RAD51AP1Q96B01 352 aa12.58□□□□□ -0.4
CNOT1-220ENST00000569916 SNF8Q96H20 258 aa12.58□□□□□ -0.4
CNOT1-220ENST00000569916 KRT12Q99456 494 aa12.58□□□□□ -0.4
CNOT1-220ENST00000569916 NAT9Q9BTE0 207 aa12.58□□□□□ -0.4
CNOT1-220ENST00000569916 TRIM31Q9BZY9 425 aa12.58□□□□□ -0.4
CNOT1-220ENST00000569916 CHRNA10Q9GZZ6 450 aa12.58□□□□□ -0.4
CNOT1-220ENST00000569916 AKIRIN1Q9H9L7 192 aaPredicted RBP12.58□□□□□ -0.4
CNOT1-220ENST00000569916 SYTL2Q9HCH5 934 aa12.58□□□□□ -0.4
CNOT1-220ENST00000569916 FAM60AQ9NP50 221 aa12.58□□□□□ -0.4
CNOT1-220ENST00000569916 LHX9Q9NQ69 397 aa12.58□□□□□ -0.4
CNOT1-220ENST00000569916 IARS2Q9NSE4 1012 aaKnown RBP12.58□□□□□ -0.4
CNOT1-220ENST00000569916 PCDHB3Q9Y5E6 796 aa12.58□□□□□ -0.4
CNOT1-220ENST00000569916 MRFAP1Q9Y605 127 aa12.58□□□□□ -0.4
CNOT1-220ENST00000569916 FER1L5A0AVI2 2057 aa12.58□□□□□ -0.4
CNOT1-220ENST00000569916 EIF4E1BA6NMX2 242 aaKnown RBP12.57□□□□□ -0.4
CNOT1-220ENST00000569916 EFCAB8A8MWE9 144 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms