RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 CACHD1Q5VU97 1274 aa19.77■□□□□ 0.76
CLN3-230ENST00000568076 ZBTB49Q6ZSB9 765 aa19.77■□□□□ 0.76
CLN3-230ENST00000568076 EPHX4Q8IUS5 362 aa19.77■□□□□ 0.76
CLN3-230ENST00000568076 CHERPQ8IWX8 916 aaKnown RBP19.77■□□□□ 0.76
CLN3-230ENST00000568076 L3MBTL4Q8NA19 623 aa19.77■□□□□ 0.76
CLN3-230ENST00000568076 TRPV3Q8NET8 790 aa19.77■□□□□ 0.76
CLN3-230ENST00000568076 CLHC1Q8NHS4 586 aa19.77■□□□□ 0.76
CLN3-230ENST00000568076 OSCP1Q8WVF1 389 aa19.77■□□□□ 0.76
CLN3-230ENST00000568076 BTN2A2Q8WVV5 523 aa19.77■□□□□ 0.76
CLN3-230ENST00000568076 NXPE3Q969Y0 559 aa19.77■□□□□ 0.76
CLN3-230ENST00000568076 GBP5Q96PP8 586 aa19.77■□□□□ 0.76
CLN3-230ENST00000568076 DPY30Q9C005 99 aa19.77■□□□□ 0.76
CLN3-230ENST00000568076 ATG10Q9H0Y0 220 aa19.77■□□□□ 0.76
CLN3-230ENST00000568076 CLMPQ9H6B4 373 aa19.77■□□□□ 0.76
CLN3-230ENST00000568076 RWDD3Q9Y3V2 267 aa19.77■□□□□ 0.76
CLN3-230ENST00000568076 SAC3D1A6NKF1 404 aa19.77■□□□□ 0.75
CLN3-230ENST00000568076 KPNA5O15131 536 aa19.77■□□□□ 0.75
CLN3-230ENST00000568076 DFNA5O60443 496 aa19.77■□□□□ 0.75
CLN3-230ENST00000568076 TULP3O75386 442 aa19.77■□□□□ 0.75
CLN3-230ENST00000568076 FTH1P02794 183 aa19.77■□□□□ 0.75
CLN3-230ENST00000568076 BCKDHAP12694 445 aa19.77■□□□□ 0.75
CLN3-230ENST00000568076 ITPKAP23677 461 aa19.77■□□□□ 0.75
CLN3-230ENST00000568076 SPANXN4Q5MJ08 99 aa19.77■□□□□ 0.75
CLN3-230ENST00000568076 PPP4R4Q6NUP7 873 aa19.77■□□□□ 0.75
CLN3-230ENST00000568076 NEK10Q6ZWH5 1172 aa19.77■□□□□ 0.75
CLN3-230ENST00000568076 UBE2Q1Q7Z7E8 422 aa19.77■□□□□ 0.75
CLN3-230ENST00000568076 C12orf76Q8N812 135 aaPredicted RBP19.77■□□□□ 0.75
CLN3-230ENST00000568076 RASGEF1AQ8N9B8 481 aa19.77■□□□□ 0.75
CLN3-230ENST00000568076 MCOLN3Q8TDD5 553 aa19.77■□□□□ 0.75
CLN3-230ENST00000568076 ASZ1Q8WWH4 475 aa19.77■□□□□ 0.75
CLN3-230ENST00000568076 SELENOMQ8WWX9 145 aa19.77■□□□□ 0.75
CLN3-230ENST00000568076 LRIG1Q96JA1 1093 aa19.77■□□□□ 0.75
CLN3-230ENST00000568076 TRAPPC9Q96Q05 1148 aa19.77■□□□□ 0.75
CLN3-230ENST00000568076 ZBTB18Q99592 522 aa19.77■□□□□ 0.75
CLN3-230ENST00000568076 TMEM106CQ9BVX2 250 aa19.77■□□□□ 0.75
CLN3-230ENST00000568076 DLGAP4Q9Y2H0 992 aa19.77■□□□□ 0.75
CLN3-230ENST00000568076 EME2A4GXA9 379 aaPredicted RBP19.76■□□□□ 0.75
CLN3-230ENST00000568076 PRRT4C9JH25 899 aa19.76■□□□□ 0.75
CLN3-230ENST00000568076 AREL1O15033 823 aa19.76■□□□□ 0.75
CLN3-230ENST00000568076 HOXC11O43248 304 aaPredicted RBP19.76■□□□□ 0.75
CLN3-230ENST00000568076 TSPAN6O43657 245 aa19.76■□□□□ 0.75
CLN3-230ENST00000568076 AP1S2P56377 157 aa19.76■□□□□ 0.75
CLN3-230ENST00000568076 PFN3P60673 137 aa19.76■□□□□ 0.75
CLN3-230ENST00000568076 ZNF284Q2VY69 593 aa19.76■□□□□ 0.75
CLN3-230ENST00000568076 GALNT13Q8IUC8 556 aa19.76■□□□□ 0.75
CLN3-230ENST00000568076 LILRA3Q8N6C8 439 aaPredicted RBP19.76■□□□□ 0.75
CLN3-230ENST00000568076 GLB1L3Q8NCI6 653 aaPredicted RBP19.76■□□□□ 0.75
CLN3-230ENST00000568076 FOXJ1Q92949 421 aa19.76■□□□□ 0.75
CLN3-230ENST00000568076 TIFAQ96CG3 184 aa19.76■□□□□ 0.75
CLN3-230ENST00000568076 FAM83CQ9BQN1 747 aa19.76■□□□□ 0.75
CLN3-230ENST00000568076 FAM192AQ9GZU8 254 aa19.76■□□□□ 0.75
CLN3-230ENST00000568076 RAD18Q9NS91 495 aa19.76■□□□□ 0.75
CLN3-230ENST00000568076 PCDHB3Q9Y5E6 796 aa19.76■□□□□ 0.75
CLN3-230ENST00000568076 ARHGAP10A1A4S6 786 aa19.75■□□□□ 0.75
CLN3-230ENST00000568076 SPINT1O43278 529 aa19.75■□□□□ 0.75
CLN3-230ENST00000568076 ZFC3H1O60293 1989 aaKnown RBP19.75■□□□□ 0.75
CLN3-230ENST00000568076 KCNH1O95259 989 aa19.75■□□□□ 0.75
CLN3-230ENST00000568076 ASLP04424 464 aa19.75■□□□□ 0.75
CLN3-230ENST00000568076 ELFN1P0C7U0 828 aa19.75■□□□□ 0.75
CLN3-230ENST00000568076 FASP25445 335 aa19.75■□□□□ 0.75
CLN3-230ENST00000568076 NFKBIAP25963 317 aa19.75■□□□□ 0.75
CLN3-230ENST00000568076 EEF1AKMT2Q5JPI9 291 aaKnown RBP19.75■□□□□ 0.75
CLN3-230ENST00000568076 ADGRD2Q7Z7M1 963 aa19.75■□□□□ 0.75
CLN3-230ENST00000568076 MSRB3Q8IXL7 192 aa19.75■□□□□ 0.75
CLN3-230ENST00000568076 RAVER1Q8IY67 606 aaKnown RBP19.75■□□□□ 0.75
CLN3-230ENST00000568076 PAPD5Q8NDF8 572 aaKnown RBP19.75■□□□□ 0.75
CLN3-230ENST00000568076 HCAR2Q8TDS4 363 aa19.75■□□□□ 0.75
CLN3-230ENST00000568076 GLYATL1Q969I3 302 aa19.75■□□□□ 0.75
CLN3-230ENST00000568076 BIRC7Q96CA5 298 aa19.75■□□□□ 0.75
CLN3-230ENST00000568076 ZFYVE19Q96K21 471 aa19.75■□□□□ 0.75
CLN3-230ENST00000568076 ALPK3Q96L96 1907 aa19.75■□□□□ 0.75
CLN3-230ENST00000568076 VPS35Q96QK1 796 aa19.75■□□□□ 0.75
CLN3-230ENST00000568076 CDH23Q9H251 3354 aa19.75■□□□□ 0.75
CLN3-230ENST00000568076 ELOVL6Q9H5J4 265 aa19.75■□□□□ 0.75
CLN3-230ENST00000568076 PIDD1Q9HB75 910 aa19.75■□□□□ 0.75
CLN3-230ENST00000568076 DNAJC11Q9NVH1 559 aa19.75■□□□□ 0.75
CLN3-230ENST00000568076 SNX6Q9UNH7 406 aa19.75■□□□□ 0.75
CLN3-230ENST00000568076 SLC27A6Q9Y2P4 619 aa19.75■□□□□ 0.75
CLN3-230ENST00000568076 MYOCOSA0A1B0GUC4 107 aa19.75■□□□□ 0.75
CLN3-230ENST00000568076 OTOL1A6NHN0 477 aaPredicted RBP19.75■□□□□ 0.75
CLN3-230ENST00000568076 ARHGEF33A8MVX0 844 aa19.75■□□□□ 0.75
CLN3-230ENST00000568076 PGRP06401 933 aa19.75■□□□□ 0.75
CLN3-230ENST00000568076 GSTM1P09488 218 aa19.75■□□□□ 0.75
CLN3-230ENST00000568076 SLC6A11P48066 632 aa19.75■□□□□ 0.75
CLN3-230ENST00000568076 CCT8P50990 548 aa19.75■□□□□ 0.75
CLN3-230ENST00000568076 GSTM4Q03013 218 aa19.75■□□□□ 0.75
CLN3-230ENST00000568076 ACOX1Q15067 660 aa19.75■□□□□ 0.75
CLN3-230ENST00000568076 AASDHQ4L235 1098 aaPredicted RBP19.75■□□□□ 0.75
CLN3-230ENST00000568076 LIN52Q52LA3 116 aa19.75■□□□□ 0.75
CLN3-230ENST00000568076 PROSER1Q86XN7 944 aa19.75■□□□□ 0.75
CLN3-230ENST00000568076 ETFBKMTQ8IXQ9 262 aa19.75■□□□□ 0.75
CLN3-230ENST00000568076 DTWD1Q8N5C7 304 aa19.75■□□□□ 0.75
CLN3-230ENST00000568076 OR8J3Q8NGG0 315 aa19.75■□□□□ 0.75
CLN3-230ENST00000568076 WFIKKN2Q8TEU8 576 aa19.75■□□□□ 0.75
CLN3-230ENST00000568076 FBXL8Q96CD0 374 aa19.75■□□□□ 0.75
CLN3-230ENST00000568076 AP2M1Q96CW1 435 aa19.75■□□□□ 0.75
CLN3-230ENST00000568076 OSBPL11Q9BXB4 747 aa19.75■□□□□ 0.75
CLN3-230ENST00000568076 SLC25A37Q9NYZ2 338 aa19.75■□□□□ 0.75
CLN3-230ENST00000568076 SUFUQ9UMX1 484 aa19.75■□□□□ 0.75
CLN3-230ENST00000568076 PABPN1LA6NDY0 278 aaKnown RBP19.74■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms