RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 PAMP19021 973 aa20.02■□□□□ 0.8
CLN3-219ENST00000565778 FMO4P31512 558 aa20.02■□□□□ 0.8
CLN3-219ENST00000565778 RAB28P51157 221 aa20.02■□□□□ 0.8
CLN3-219ENST00000565778 ZIC1Q15915 447 aa20.02■□□□□ 0.8
CLN3-219ENST00000565778 KYNUQ16719 465 aa20.02■□□□□ 0.8
CLN3-219ENST00000565778 IZUMO3Q5VZ72 239 aa20.02■□□□□ 0.8
CLN3-219ENST00000565778 LCN10Q6JVE6 187 aa20.02■□□□□ 0.8
CLN3-219ENST00000565778 CCDC137Q6PK04 289 aaKnown RBP20.02■□□□□ 0.8
CLN3-219ENST00000565778 UNC5DQ6UXZ4 953 aa20.02■□□□□ 0.8
CLN3-219ENST00000565778 ZNF517Q6ZMY9 492 aaPredicted RBP20.02■□□□□ 0.8
CLN3-219ENST00000565778 OTOAQ7RTW8 1153 aa20.02■□□□□ 0.8
CLN3-219ENST00000565778 SYVN1Q86TM6 617 aa20.02■□□□□ 0.8
CLN3-219ENST00000565778 REXO1L1PQ8IX06 675 aa20.02■□□□□ 0.8
CLN3-219ENST00000565778 SAMD15Q9P1V8 674 aa20.02■□□□□ 0.8
CLN3-219ENST00000565778 SLC39A10Q9ULF5 831 aa20.02■□□□□ 0.8
CLN3-219ENST00000565778 MAGEB16A2A368 324 aa20.01■□□□□ 0.79
CLN3-219ENST00000565778 MKRN2OSH3BPM6 223 aa20.01■□□□□ 0.79
CLN3-219ENST00000565778 HBQ1P09105 142 aa20.01■□□□□ 0.79
CLN3-219ENST00000565778 RPS3P23396 243 aaKnown RBP eCLIP20.01■□□□□ 0.794e-6■■□□□ 12.9
CLN3-219ENST00000565778 ARNTP27540 789 aa20.01■□□□□ 0.79
CLN3-219ENST00000565778 MAGEA6P43360 314 aa20.01■□□□□ 0.79
CLN3-219ENST00000565778 SLC5A12Q1EHB4 618 aa20.01■□□□□ 0.79
CLN3-219ENST00000565778 ZNF789Q5FWF6 425 aa20.01■□□□□ 0.79
CLN3-219ENST00000565778 ANKRD22Q5VYY1 191 aa20.01■□□□□ 0.79
CLN3-219ENST00000565778 CAND1Q86VP6 1230 aaKnown RBP20.01■□□□□ 0.79
CLN3-219ENST00000565778 DCUN1D3Q8IWE4 304 aa20.01■□□□□ 0.79
CLN3-219ENST00000565778 SLC35F6Q8N357 371 aa20.01■□□□□ 0.79
CLN3-219ENST00000565778 FLVCR1-AS1Q8TAF5 88 aa20.01■□□□□ 0.79
CLN3-219ENST00000565778 THAP4Q8WY91 577 aa20.01■□□□□ 0.79
CLN3-219ENST00000565778 TCF12Q99081 682 aa20.01■□□□□ 0.79
CLN3-219ENST00000565778 TRIM4Q9C037 500 aa20.01■□□□□ 0.79
CLN3-219ENST00000565778 PCMTD2Q9NV79 361 aa20.01■□□□□ 0.79
CLN3-219ENST00000565778 BOD1L1Q8NFC6 3051 aa20■□□□□ 0.79
CLN3-219ENST00000565778 SDR42E2A6NKP2 422 aa20■□□□□ 0.79
CLN3-219ENST00000565778 GOLGA8MH3BSY2 632 aa20■□□□□ 0.79
CLN3-219ENST00000565778 PGRMC1O00264 195 aaKnown RBP20■□□□□ 0.79
CLN3-219ENST00000565778 OR2B3O76000 313 aa20■□□□□ 0.79
CLN3-219ENST00000565778 RAB40ALP0C0E4 278 aa20■□□□□ 0.79
CLN3-219ENST00000565778 AGXTP21549 392 aa20■□□□□ 0.79
CLN3-219ENST00000565778 CD9P21926 228 aa20■□□□□ 0.79
CLN3-219ENST00000565778 PKLRP30613 574 aa20■□□□□ 0.79
CLN3-219ENST00000565778 RORAP35398 523 aa20■□□□□ 0.79
CLN3-219ENST00000565778 UGT8Q16880 541 aa20■□□□□ 0.79
CLN3-219ENST00000565778 DEFB110Q30KQ9 67 aa20■□□□□ 0.79
CLN3-219ENST00000565778 PTCHD3Q3KNS1 767 aa20■□□□□ 0.79
CLN3-219ENST00000565778 RNF187Q5TA31 235 aaPredicted RBP20■□□□□ 0.79
CLN3-219ENST00000565778 FAM20CQ8IXL6 584 aa20■□□□□ 0.79
CLN3-219ENST00000565778 SYTL1Q8IYJ3 562 aa20■□□□□ 0.79
CLN3-219ENST00000565778 ENDOVQ8N8Q3 282 aaKnown RBP20■□□□□ 0.79
CLN3-219ENST00000565778 LMNTD1Q8N9Z9 388 aa20■□□□□ 0.79
CLN3-219ENST00000565778 COG1Q8WTW3 980 aa20■□□□□ 0.79
CLN3-219ENST00000565778 SLC22A18Q96BI1 424 aa20■□□□□ 0.79
CLN3-219ENST00000565778 IL17FQ96PD4 163 aa20■□□□□ 0.79
CLN3-219ENST00000565778 OSBPL9Q96SU4 736 aa20■□□□□ 0.79
CLN3-219ENST00000565778 NLNQ9BYT8 704 aa20■□□□□ 0.79
CLN3-219ENST00000565778 SPRTNQ9H040 489 aaPredicted RBP20■□□□□ 0.79
CLN3-219ENST00000565778 IRAK4Q9NWZ3 460 aa20■□□□□ 0.79
CLN3-219ENST00000565778 TRMT1Q9NXH9 659 aaKnown RBP20■□□□□ 0.79
CLN3-219ENST00000565778 CAMSAP3Q9P1Y5 1249 aaPredicted RBP20■□□□□ 0.79
CLN3-219ENST00000565778 SNX7Q9UNH6 387 aa20■□□□□ 0.79
CLN3-219ENST00000565778 CRYL1Q9Y2S2 319 aa20■□□□□ 0.79
CLN3-219ENST00000565778 MLNP12872 115 aa19.99■□□□□ 0.79
CLN3-219ENST00000565778 CHRM3P20309 590 aa19.99■□□□□ 0.79
CLN3-219ENST00000565778 PEBP1P30086 187 aaKnown RBP19.99■□□□□ 0.79
CLN3-219ENST00000565778 KCNC4Q03721 635 aa19.99■□□□□ 0.79
CLN3-219ENST00000565778 CYP1B1Q16678 543 aa19.99■□□□□ 0.79
CLN3-219ENST00000565778 LACTB2Q53H82 288 aaPredicted RBP19.99■□□□□ 0.79
CLN3-219ENST00000565778 ARMC3Q5W041 872 aa19.99■□□□□ 0.79
CLN3-219ENST00000565778 KIAA0930Q6ICG6 404 aaPredicted RBP19.99■□□□□ 0.79
CLN3-219ENST00000565778 NEPROQ6NW34 567 aa19.99■□□□□ 0.79
CLN3-219ENST00000565778 LINC01555Q8NAE3 123 aa19.99■□□□□ 0.79
CLN3-219ENST00000565778 RAD51AP1Q96B01 352 aa19.99■□□□□ 0.79
CLN3-219ENST00000565778 FOPNLQ96NB1 174 aa19.99■□□□□ 0.79
CLN3-219ENST00000565778 BIRC8Q96P09 236 aa19.99■□□□□ 0.79
CLN3-219ENST00000565778 CHRNA10Q9GZZ6 450 aa19.99■□□□□ 0.79
CLN3-219ENST00000565778 TLK1Q9UKI8 766 aa19.99■□□□□ 0.79
CLN3-219ENST00000565778 KLHL20Q9Y2M5 609 aa19.99■□□□□ 0.79
CLN3-219ENST00000565778 MRFAP1Q9Y605 127 aa19.99■□□□□ 0.79
CLN3-219ENST00000565778 AP1M2Q9Y6Q5 423 aa19.99■□□□□ 0.79
CLN3-219ENST00000565778 H3BMM5 538 aa19.98■□□□□ 0.79
CLN3-219ENST00000565778 HCRTR1O43613 425 aa19.98■□□□□ 0.79
CLN3-219ENST00000565778 KIF5CO60282 957 aa19.98■□□□□ 0.79
CLN3-219ENST00000565778 RFPL1O75677 317 aa19.98■□□□□ 0.79
CLN3-219ENST00000565778 TMEM63AO94886 807 aa19.98■□□□□ 0.79
CLN3-219ENST00000565778 WISP1O95388 367 aa19.98■□□□□ 0.79
CLN3-219ENST00000565778 ATXN8OSP0DMR3 200 aa19.98■□□□□ 0.79
CLN3-219ENST00000565778 PMS2P54278 862 aa19.98■□□□□ 0.79
CLN3-219ENST00000565778 DHX34Q14147 1143 aaKnown RBP19.98■□□□□ 0.79
CLN3-219ENST00000565778 GRB7Q14451 532 aa19.98■□□□□ 0.79
CLN3-219ENST00000565778 SF1Q15637 639 aaKnown RBP19.98■□□□□ 0.79
CLN3-219ENST00000565778 TYSND1Q2T9J0 566 aa19.98■□□□□ 0.79
CLN3-219ENST00000565778 ANKRD20A4Q4UJ75 823 aa19.98■□□□□ 0.79
CLN3-219ENST00000565778 CTSL3PQ5NE16 218 aa19.98■□□□□ 0.79
CLN3-219ENST00000565778 TAX1BP1Q86VP1 789 aa19.98■□□□□ 0.79
CLN3-219ENST00000565778 DNAJC22Q8N4W6 341 aa19.98■□□□□ 0.79
CLN3-219ENST00000565778 MCUQ8NE86 351 aa19.98■□□□□ 0.79
CLN3-219ENST00000565778 OR2L8Q8NGY9 312 aa19.98■□□□□ 0.79
CLN3-219ENST00000565778 ACTRT1Q8TDG2 376 aa19.98■□□□□ 0.79
CLN3-219ENST00000565778 GRK7Q8WTQ7 553 aa19.98■□□□□ 0.79
CLN3-219ENST00000565778 LPGAT1Q92604 370 aa19.98■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms