RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 HEATR4Q86WZ0 1026 aa11.52□□□□□ -0.57
LDLR-212ENST00000560467 GKN2Q86XP6 184 aa11.52□□□□□ -0.57
LDLR-212ENST00000560467 TRAPPC5Q8IUR0 188 aa11.52□□□□□ -0.57
LDLR-212ENST00000560467 TRIM42Q8IWZ5 723 aa11.52□□□□□ -0.57
LDLR-212ENST00000560467 MYO1HQ8N1T3 1032 aa11.52□□□□□ -0.57
LDLR-212ENST00000560467 ZBTB2Q8N680 514 aa11.52□□□□□ -0.57
LDLR-212ENST00000560467 CLDN19Q8N6F1 224 aa11.52□□□□□ -0.57
LDLR-212ENST00000560467 BANPQ8N9N5 519 aa11.52□□□□□ -0.57
LDLR-212ENST00000560467 PPP1R14CQ8TAE6 165 aa11.52□□□□□ -0.57
LDLR-212ENST00000560467 SKA2Q8WVK7 121 aaPredicted RBP11.52□□□□□ -0.57
LDLR-212ENST00000560467 ISL2Q96A47 359 aa11.52□□□□□ -0.57
LDLR-212ENST00000560467 GPR21Q99679 349 aa11.52□□□□□ -0.57
LDLR-212ENST00000560467 CCM2Q9BSQ5 444 aa11.52□□□□□ -0.57
LDLR-212ENST00000560467 MCMBPQ9BTE3 642 aa11.52□□□□□ -0.57
LDLR-212ENST00000560467 APOOQ9BUR5 198 aa11.52□□□□□ -0.57
LDLR-212ENST00000560467 TEX101Q9BY14 249 aa11.52□□□□□ -0.57
LDLR-212ENST00000560467 OR2AG1Q9H205 316 aa11.52□□□□□ -0.57
LDLR-212ENST00000560467 MKS1Q9NXB0 559 aa11.52□□□□□ -0.57
LDLR-212ENST00000560467 BSNQ9UPA5 3926 aa11.51□□□□□ -0.57
LDLR-212ENST00000560467 HMX2A2RU54 273 aa11.51□□□□□ -0.57
LDLR-212ENST00000560467 SYCE1LA8MT33 242 aa11.51□□□□□ -0.57
LDLR-212ENST00000560467 FADS2P1A8MWK0 482 aa11.51□□□□□ -0.57
LDLR-212ENST00000560467 B4DGG1 531 aa11.51□□□□□ -0.57
LDLR-212ENST00000560467 EIF3FO00303 357 aaPredicted RBP11.51□□□□□ -0.57
LDLR-212ENST00000560467 NVLO15381 856 aaKnown RBP11.51□□□□□ -0.57
LDLR-212ENST00000560467 PHGDHO43175 533 aaKnown RBP11.51□□□□□ -0.57
LDLR-212ENST00000560467 KCNJ13O60928 360 aa11.51□□□□□ -0.57
LDLR-212ENST00000560467 S100BP04271 92 aaPredicted RBP11.51□□□□□ -0.57
LDLR-212ENST00000560467 CBSLP0DN79 551 aa11.51□□□□□ -0.57
LDLR-212ENST00000560467 ENO3P13929 434 aaPredicted RBP11.51□□□□□ -0.57
LDLR-212ENST00000560467 CBSP35520 551 aa11.51□□□□□ -0.57
LDLR-212ENST00000560467 TRIM23P36406 574 aa11.51□□□□□ -0.57
LDLR-212ENST00000560467 ATP1A2P50993 1020 aa11.51□□□□□ -0.57
LDLR-212ENST00000560467 MAPK10P53779 464 aa11.51□□□□□ -0.57
LDLR-212ENST00000560467 CDKN2DP55273 166 aa11.51□□□□□ -0.57
LDLR-212ENST00000560467 CDK3Q00526 305 aa11.51□□□□□ -0.57
LDLR-212ENST00000560467 ZFP36L1Q07352 338 aaKnown RBP11.51□□□□□ -0.57
LDLR-212ENST00000560467 ZNF549Q6P9A3 640 aa11.51□□□□□ -0.57
LDLR-212ENST00000560467 DOK6Q6PKX4 331 aa11.51□□□□□ -0.57
LDLR-212ENST00000560467 TMEM220Q6QAJ8 160 aa11.51□□□□□ -0.57
LDLR-212ENST00000560467 ATG14Q6ZNE5 492 aa11.51□□□□□ -0.57
LDLR-212ENST00000560467 CMC1Q7Z7K0 106 aa11.51□□□□□ -0.57
LDLR-212ENST00000560467 BEND7Q8N7W2 519 aaPredicted RBP11.51□□□□□ -0.57
LDLR-212ENST00000560467 PLA2G15Q8NCC3 412 aa11.51□□□□□ -0.57
LDLR-212ENST00000560467 GPR156Q8NFN8 814 aa11.51□□□□□ -0.57
LDLR-212ENST00000560467 TCP10LQ8TDR4 215 aa11.51□□□□□ -0.57
LDLR-212ENST00000560467 MZB1Q8WU39 189 aa11.51□□□□□ -0.57
LDLR-212ENST00000560467 OR1E3Q8WZA6 343 aa11.51□□□□□ -0.57
LDLR-212ENST00000560467 ELMO1Q92556 727 aa11.51□□□□□ -0.57
LDLR-212ENST00000560467 USP7Q93009 1102 aa11.51□□□□□ -0.57
LDLR-212ENST00000560467 TMEM159Q96B96 161 aa11.51□□□□□ -0.57
LDLR-212ENST00000560467 WDR92Q96MX6 357 aa11.51□□□□□ -0.57
LDLR-212ENST00000560467 FOPNLQ96NB1 174 aa11.51□□□□□ -0.57
LDLR-212ENST00000560467 BIRC8Q96P09 236 aa11.51□□□□□ -0.57
LDLR-212ENST00000560467 TRIM54Q9BYV2 358 aa11.51□□□□□ -0.57
LDLR-212ENST00000560467 FGF22Q9HCT0 170 aa11.51□□□□□ -0.57
LDLR-212ENST00000560467 LATS2Q9NRM7 1088 aa11.51□□□□□ -0.57
LDLR-212ENST00000560467 ZNHIT2Q9UHR6 403 aa11.51□□□□□ -0.57
LDLR-212ENST00000560467 MOSPD1Q9UJG1 213 aa11.51□□□□□ -0.57
LDLR-212ENST00000560467 DHRS7Q9Y394 339 aa11.51□□□□□ -0.57
LDLR-212ENST00000560467 DNMT3AQ9Y6K1 912 aaPredicted RBP11.51□□□□□ -0.57
LDLR-212ENST00000560467 OAS3Q9Y6K5 1087 aaKnown RBP11.51□□□□□ -0.57
LDLR-212ENST00000560467 RNF215Q9Y6U7 377 aa11.51□□□□□ -0.57
LDLR-212ENST00000560467 LRRK2Q5S007 2527 aa11.51□□□□□ -0.57
LDLR-212ENST00000560467 TMEM202A6NGA9 273 aa11.5□□□□□ -0.57
LDLR-212ENST00000560467 OR2AG2A6NM03 316 aa11.5□□□□□ -0.57
LDLR-212ENST00000560467 C9orf172C9J069 976 aa11.5□□□□□ -0.57
LDLR-212ENST00000560467 KMOO15229 486 aa11.5□□□□□ -0.57
LDLR-212ENST00000560467 GPR39O43194 453 aa11.5□□□□□ -0.57
LDLR-212ENST00000560467 SUV39H1O43463 412 aa11.5□□□□□ -0.57
LDLR-212ENST00000560467 NIPSNAP2O75323 286 aa11.5□□□□□ -0.57
LDLR-212ENST00000560467 MTX2O75431 263 aa11.5□□□□□ -0.57
LDLR-212ENST00000560467 SLC35E2BP0CK96 405 aa11.5□□□□□ -0.57
LDLR-212ENST00000560467 GM2AP17900 193 aa11.5□□□□□ -0.57
LDLR-212ENST00000560467 RPA3P35244 121 aaPredicted RBP11.5□□□□□ -0.57
LDLR-212ENST00000560467 CCNFP41002 786 aa11.5□□□□□ -0.57
LDLR-212ENST00000560467 MAGEA12P43365 314 aa11.5□□□□□ -0.57
LDLR-212ENST00000560467 SRSF1Q07955 248 aaKnown RBP eCLIP11.5□□□□□ -0.572e-6■■■□□ 15.1
LDLR-212ENST00000560467 HSPA14Q0VDF9 509 aa11.5□□□□□ -0.57
LDLR-212ENST00000560467 CSHL1Q14406 222 aa11.5□□□□□ -0.57
LDLR-212ENST00000560467 CLCA4Q14CN2 919 aa11.5□□□□□ -0.57
LDLR-212ENST00000560467 ACAP2Q15057 778 aa11.5□□□□□ -0.57
LDLR-212ENST00000560467 ZKSCAN8Q15776 578 aaPredicted RBP11.5□□□□□ -0.57
LDLR-212ENST00000560467 COLEC12Q5KU26 742 aa11.5□□□□□ -0.57
LDLR-212ENST00000560467 PLEKHS1Q5SXH7 462 aa11.5□□□□□ -0.57
LDLR-212ENST00000560467 PHF19Q5T6S3 580 aa11.5□□□□□ -0.57
LDLR-212ENST00000560467 TTC23LQ6PF05 361 aa11.5□□□□□ -0.57
LDLR-212ENST00000560467 PAQR3Q6TCH7 311 aa11.5□□□□□ -0.57
LDLR-212ENST00000560467 TAF8Q7Z7C8 310 aa11.5□□□□□ -0.57
LDLR-212ENST00000560467 LRRTM4Q86VH4 590 aa11.5□□□□□ -0.57
LDLR-212ENST00000560467 AMZ2Q86W34 360 aa11.5□□□□□ -0.57
LDLR-212ENST00000560467 CEP97Q8IW35 865 aa11.5□□□□□ -0.57
LDLR-212ENST00000560467 SLITRK4Q8IW52 837 aa11.5□□□□□ -0.57
LDLR-212ENST00000560467 FAM46DQ8NEK8 389 aa11.5□□□□□ -0.57
LDLR-212ENST00000560467 OR6C4Q8NGE1 309 aa11.5□□□□□ -0.57
LDLR-212ENST00000560467 STAG3L4Q8TBR4 150 aa11.5□□□□□ -0.57
LDLR-212ENST00000560467 RDH11Q8TC12 318 aa11.5□□□□□ -0.57
LDLR-212ENST00000560467 MGARPQ8TDB4 240 aa11.5□□□□□ -0.57
LDLR-212ENST00000560467 JPH3Q8WXH2 748 aaPredicted RBP11.5□□□□□ -0.57
LDLR-212ENST00000560467 FAM136AQ96C01 138 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms