RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 POLR2CP19387 275 aaPredicted RBP12.6□□□□□ -0.39
NEDD8-208ENST00000560427 MCM3P25205 808 aa12.6□□□□□ -0.39
NEDD8-208ENST00000560427 MPSTP25325 297 aa12.6□□□□□ -0.39
NEDD8-208ENST00000560427 MAP4P27816 1152 aaKnown RBP12.6□□□□□ -0.39
NEDD8-208ENST00000560427 ABCG1P45844 678 aa12.6□□□□□ -0.39
NEDD8-208ENST00000560427 BDKRB1P46663 353 aa12.6□□□□□ -0.39
NEDD8-208ENST00000560427 SLC12A2P55011 1212 aa12.6□□□□□ -0.39
NEDD8-208ENST00000560427 GRB7Q14451 532 aa12.6□□□□□ -0.39
NEDD8-208ENST00000560427 TBC1D25Q3MII6 688 aa12.6□□□□□ -0.39
NEDD8-208ENST00000560427 SNAP47Q5SQN1 464 aa12.6□□□□□ -0.39
NEDD8-208ENST00000560427 TMEM164Q5U3C3 297 aa12.6□□□□□ -0.39
NEDD8-208ENST00000560427 CACHD1Q5VU97 1274 aa12.6□□□□□ -0.39
NEDD8-208ENST00000560427 ANKS6Q68DC2 871 aa12.6□□□□□ -0.39
NEDD8-208ENST00000560427 PAQR3Q6TCH7 311 aa12.6□□□□□ -0.39
NEDD8-208ENST00000560427 CYHR1Q6ZMK1 362 aa12.6□□□□□ -0.39
NEDD8-208ENST00000560427 CLEC14AQ86T13 490 aa12.6□□□□□ -0.39
NEDD8-208ENST00000560427 ADGRF3Q8IZF5 1079 aa12.6□□□□□ -0.39
NEDD8-208ENST00000560427 NKAPQ8N5F7 415 aaKnown RBP12.6□□□□□ -0.39
NEDD8-208ENST00000560427 OR2L8Q8NGY9 312 aa12.6□□□□□ -0.39
NEDD8-208ENST00000560427 KLHL6Q8WZ60 621 aa12.6□□□□□ -0.39
NEDD8-208ENST00000560427 LINGO1Q96FE5 620 aa12.6□□□□□ -0.39
NEDD8-208ENST00000560427 PDLIM5Q96HC4 596 aaKnown RBP12.6□□□□□ -0.39
NEDD8-208ENST00000560427 PRR11Q96HE9 360 aaPredicted RBP12.6□□□□□ -0.39
NEDD8-208ENST00000560427 SLC41A2Q96JW4 573 aa12.6□□□□□ -0.39
NEDD8-208ENST00000560427 SLC46A1Q96NT5 459 aa12.6□□□□□ -0.39
NEDD8-208ENST00000560427 TEFMQ96QE5 360 aaKnown RBP12.6□□□□□ -0.39
NEDD8-208ENST00000560427 OLFM1Q99784 485 aa12.6□□□□□ -0.39
NEDD8-208ENST00000560427 DDA1Q9BW61 102 aa12.6□□□□□ -0.39
NEDD8-208ENST00000560427 C1GALT1Q9NS00 363 aa12.6□□□□□ -0.39
NEDD8-208ENST00000560427 ACTR10Q9NZ32 417 aa12.6□□□□□ -0.39
NEDD8-208ENST00000560427 KLHL3Q9UH77 587 aa12.6□□□□□ -0.39
NEDD8-208ENST00000560427 LNPEPQ9UIQ6 1025 aa12.6□□□□□ -0.39
NEDD8-208ENST00000560427 PCDHGA3Q9Y5H0 932 aa12.6□□□□□ -0.39
NEDD8-208ENST00000560427 CDRT15L2A8MXV6 281 aa12.59□□□□□ -0.39
NEDD8-208ENST00000560427 C1QTNF9BB2RNN3 333 aa12.59□□□□□ -0.39
NEDD8-208ENST00000560427 TNFSF15O95150 251 aa12.59□□□□□ -0.39
NEDD8-208ENST00000560427 ZBTB11O95625 1053 aaPredicted RBP12.59□□□□□ -0.39
NEDD8-208ENST00000560427 TSPAN12O95859 305 aa12.59□□□□□ -0.39
NEDD8-208ENST00000560427 CHRM5P08912 532 aaPredicted RBP12.59□□□□□ -0.39
NEDD8-208ENST00000560427 C1QTNF9P0C862 333 aa12.59□□□□□ -0.39
NEDD8-208ENST00000560427 TPBGLP0DKB5 382 aa12.59□□□□□ -0.39
NEDD8-208ENST00000560427 NELFEP18615 380 aaKnown RBP12.59□□□□□ -0.39
NEDD8-208ENST00000560427 CYP2A7P20853 494 aa12.59□□□□□ -0.39
NEDD8-208ENST00000560427 CD82P27701 267 aa12.59□□□□□ -0.39
NEDD8-208ENST00000560427 PRDX3P30048 256 aaKnown RBP12.59□□□□□ -0.39
NEDD8-208ENST00000560427 DEKP35659 375 aaKnown RBP12.59□□□□□ -0.39
NEDD8-208ENST00000560427 KPNA2P52292 529 aaKnown RBP12.59□□□□□ -0.39
NEDD8-208ENST00000560427 TAS2R39P59534 338 aa12.59□□□□□ -0.39
NEDD8-208ENST00000560427 ZKSCAN8Q15776 578 aaPredicted RBP12.59□□□□□ -0.39
NEDD8-208ENST00000560427 CYP2A13Q16696 494 aa12.59□□□□□ -0.39
NEDD8-208ENST00000560427 SLC5A12Q1EHB4 618 aa12.59□□□□□ -0.39
NEDD8-208ENST00000560427 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.59□□□□□ -0.39
NEDD8-208ENST00000560427 SPESP1Q6UW49 350 aa12.59□□□□□ -0.39
NEDD8-208ENST00000560427 FAM92BQ6ZTR7 304 aa12.59□□□□□ -0.39
NEDD8-208ENST00000560427 PIWIL4Q7Z3Z4 852 aaKnown RBP12.59□□□□□ -0.39
NEDD8-208ENST00000560427 CCDC91Q7Z6B0 441 aa12.59□□□□□ -0.39
NEDD8-208ENST00000560427 PPM1NQ8N819 430 aa12.59□□□□□ -0.39
NEDD8-208ENST00000560427 BMPERQ8N8U9 685 aa12.59□□□□□ -0.39
NEDD8-208ENST00000560427 KDF1Q8NAX2 398 aaPredicted RBP12.59□□□□□ -0.39
NEDD8-208ENST00000560427 OR9A1PQ8NGU1 263 aa12.59□□□□□ -0.39
NEDD8-208ENST00000560427 EEF1AKMT1Q8WVE0 214 aa12.59□□□□□ -0.39
NEDD8-208ENST00000560427 ZPBPQ9BS86 351 aa12.59□□□□□ -0.39
NEDD8-208ENST00000560427 ASPSCR1Q9BZE9 553 aa12.59□□□□□ -0.39
NEDD8-208ENST00000560427 CHRNA10Q9GZZ6 450 aa12.59□□□□□ -0.39
NEDD8-208ENST00000560427 XKR8Q9H6D3 395 aa12.59□□□□□ -0.39
NEDD8-208ENST00000560427 ASCL3Q9NQ33 180 aa12.59□□□□□ -0.39
NEDD8-208ENST00000560427 SIDT1Q9NXL6 827 aaKnown RBP12.59□□□□□ -0.39
NEDD8-208ENST00000560427 PISDQ9UG56 409 aa12.59□□□□□ -0.39
NEDD8-208ENST00000560427 ACSL6Q9UKU0 697 aa12.59□□□□□ -0.39
NEDD8-208ENST00000560427 RUVBL2Q9Y230 463 aaKnown RBP12.59□□□□□ -0.39
NEDD8-208ENST00000560427 PCDHB11Q9Y5F2 797 aa12.59□□□□□ -0.39
NEDD8-208ENST00000560427 A0A087WUV0 522 aaPredicted RBP12.58□□□□□ -0.4
NEDD8-208ENST00000560427 PABPN1LA6NDY0 278 aaKnown RBP12.58□□□□□ -0.4
NEDD8-208ENST00000560427 A8MU76 341 aa12.58□□□□□ -0.4
NEDD8-208ENST00000560427 NVLO15381 856 aaKnown RBP12.58□□□□□ -0.4
NEDD8-208ENST00000560427 MAP3K7O43318 606 aa12.58□□□□□ -0.4
NEDD8-208ENST00000560427 ACSL3O95573 720 aa12.58□□□□□ -0.4
NEDD8-208ENST00000560427 CAPNS1P04632 268 aa12.58□□□□□ -0.4
NEDD8-208ENST00000560427 ENO2P09104 434 aaPredicted RBP12.58□□□□□ -0.4
NEDD8-208ENST00000560427 STMN1P16949 149 aa12.58□□□□□ -0.4
NEDD8-208ENST00000560427 CDH3P22223 829 aa12.58□□□□□ -0.4
NEDD8-208ENST00000560427 ARL4DP49703 201 aa12.58□□□□□ -0.4
NEDD8-208ENST00000560427 PMS2P54278 862 aa12.58□□□□□ -0.4
NEDD8-208ENST00000560427 PPP1CAP62136 330 aa12.58□□□□□ -0.4
NEDD8-208ENST00000560427 HSD11B2P80365 405 aa12.58□□□□□ -0.4
NEDD8-208ENST00000560427 MC2RQ01718 297 aa12.58□□□□□ -0.4
NEDD8-208ENST00000560427 ACY1Q03154 408 aa12.58□□□□□ -0.4
NEDD8-208ENST00000560427 CYP4F3Q08477 520 aa12.58□□□□□ -0.4
NEDD8-208ENST00000560427 USP10Q14694 798 aaKnown RBP12.58□□□□□ -0.4
NEDD8-208ENST00000560427 NAA25Q14CX7 972 aa12.58□□□□□ -0.4
NEDD8-208ENST00000560427 TAOK1Q7L7X3 1001 aa12.58□□□□□ -0.4
NEDD8-208ENST00000560427 BPHLQ86WA6 291 aaPredicted RBP12.58□□□□□ -0.4
NEDD8-208ENST00000560427 FAM129CQ86XR2 697 aa12.58□□□□□ -0.4
NEDD8-208ENST00000560427 D2HGDHQ8N465 521 aa12.58□□□□□ -0.4
NEDD8-208ENST00000560427 LINC01555Q8NAE3 123 aa12.58□□□□□ -0.4
NEDD8-208ENST00000560427 SNIP1Q8TAD8 396 aaKnown RBP12.58□□□□□ -0.4
NEDD8-208ENST00000560427 MCOLN3Q8TDD5 553 aa12.58□□□□□ -0.4
NEDD8-208ENST00000560427 ZCCHC14Q8WYQ9 949 aaKnown RBP12.58□□□□□ -0.4
NEDD8-208ENST00000560427 TAAR9Q96RI9 348 aa12.58□□□□□ -0.4
NEDD8-208ENST00000560427 MAP3K3Q99759 626 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms