RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 SERTM1A2A2V5 107 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 NPIPB15A6NHN6 443 aaPredicted RBP7.11□□□□□ -1.27
VPS13C-206ENST00000558338 FAM220BPB1ANY3 271 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 NPIPB8E9PQR5 432 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 ZNF701M0R085 212 aaPredicted RBP7.11□□□□□ -1.27
VPS13C-206ENST00000558338 LEFTY2O00292 366 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 TEX28O15482 410 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 NUAK1O60285 661 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 ERN1O75460 977 aaKnown RBP7.11□□□□□ -1.27
VPS13C-206ENST00000558338 OR6B1O95007 311 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 SCELO95171 688 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 POP4O95707 220 aaKnown RBP7.11□□□□□ -1.27
VPS13C-206ENST00000558338 BPNT1O95861 308 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 ALBP02768 609 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 CTSAP10619 480 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 CD70P32970 193 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 MAPK9P45984 424 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 AP1S2P56377 157 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 CYP4F3Q08477 520 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 ARHGEF7Q14155 803 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 PTPRRQ15256 657 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 PHKG1Q16816 387 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 CARD16Q5EG05 197 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 LRRC66Q68CR7 880 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 CRTC1Q6UUV9 634 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 PATL1Q86TB9 770 aaKnown RBP7.11□□□□□ -1.27
VPS13C-206ENST00000558338 LAPTM4BQ86VI4 370 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 TMC8Q8IU68 726 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 DCBLD1Q8N8Z6 715 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 OR2T12Q8NG77 320 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 ZFP28Q8NHY6 868 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 GFM2Q969S9 779 aaKnown RBP7.11□□□□□ -1.27
VPS13C-206ENST00000558338 NMD3Q96D46 503 aaKnown RBP7.11□□□□□ -1.27
VPS13C-206ENST00000558338 MPP4Q96JB8 637 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 VPS50Q96JG6 964 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 TMEM74Q96NL1 305 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 ZBP1Q9H171 429 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 TNKS2Q9H2K2 1166 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 ACTL8Q9H568 366 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 MAGIXQ9H6Y5 334 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 RPF2Q9H7B2 306 aaKnown RBP7.11□□□□□ -1.27
VPS13C-206ENST00000558338 ACTR8Q9H981 624 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 ASAH2Q9NR71 780 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 HECAQ9UBI9 543 aaPredicted RBP7.11□□□□□ -1.27
VPS13C-206ENST00000558338 TSR3Q9UJK0 312 aaKnown RBP7.11□□□□□ -1.27
VPS13C-206ENST00000558338 TBX21Q9UL17 535 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 PCDHGB4Q9UN71 923 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 TRIM17Q9Y577 477 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 PCDHGB5Q9Y5G0 923 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 AK5Q9Y6K8 562 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 EME2A4GXA9 379 aaPredicted RBP7.1□□□□□ -1.27
VPS13C-206ENST00000558338 TRIM64A6NGJ6 449 aa7.1□□□□□ -1.27
VPS13C-206ENST00000558338 SOBPA7XYQ1 873 aa7.1□□□□□ -1.27
VPS13C-206ENST00000558338 EI24O14681 340 aa7.1□□□□□ -1.27
VPS13C-206ENST00000558338 ACOX3O15254 700 aa7.1□□□□□ -1.27
VPS13C-206ENST00000558338 CLOCKO15516 846 aa7.1□□□□□ -1.27
VPS13C-206ENST00000558338 SEC22BO75396 215 aa7.1□□□□□ -1.27
VPS13C-206ENST00000558338 ZNF821O75541 412 aaPredicted RBP7.1□□□□□ -1.27
VPS13C-206ENST00000558338 AP2A2O94973 939 aa7.1□□□□□ -1.27
VPS13C-206ENST00000558338 PGRP06401 933 aa7.1□□□□□ -1.27
VPS13C-206ENST00000558338 ADH1AP07327 375 aa7.1□□□□□ -1.27
VPS13C-206ENST00000558338 ETS2P15036 469 aa7.1□□□□□ -1.27
VPS13C-206ENST00000558338 NCK1P16333 377 aa7.1□□□□□ -1.27
VPS13C-206ENST00000558338 IL1RNP18510 177 aa7.1□□□□□ -1.27
VPS13C-206ENST00000558338 UGT1A6P19224 532 aa7.1□□□□□ -1.27
VPS13C-206ENST00000558338 UGT1A1P22309 533 aa7.1□□□□□ -1.27
VPS13C-206ENST00000558338 UGT1A4P22310 534 aa7.1□□□□□ -1.27
VPS13C-206ENST00000558338 UGT1A3P35503 534 aa7.1□□□□□ -1.27
VPS13C-206ENST00000558338 UGT1A5P35504 534 aa7.1□□□□□ -1.27
VPS13C-206ENST00000558338 RECQLP46063 649 aaPredicted RBP7.1□□□□□ -1.27
VPS13C-206ENST00000558338 RPIAP49247 311 aa7.1□□□□□ -1.27
VPS13C-206ENST00000558338 CDK9P50750 372 aaKnown RBP7.1□□□□□ -1.27
VPS13C-206ENST00000558338 OR4D2P58180 307 aa7.1□□□□□ -1.27
VPS13C-206ENST00000558338 DCDC1P59894 354 aa7.1□□□□□ -1.27
VPS13C-206ENST00000558338 TLE2Q04725 743 aa7.1□□□□□ -1.27
VPS13C-206ENST00000558338 KCNC3Q14003 757 aa7.1□□□□□ -1.27
VPS13C-206ENST00000558338 GBX1Q14549 363 aa7.1□□□□□ -1.27
VPS13C-206ENST00000558338 KIAA0040Q15053 153 aa7.1□□□□□ -1.27
VPS13C-206ENST00000558338 DPY19L1Q2PZI1 675 aa7.1□□□□□ -1.27
VPS13C-206ENST00000558338 C18orf21Q32NC0 220 aaPredicted RBP7.1□□□□□ -1.27
VPS13C-206ENST00000558338 PROX2Q3B8N5 592 aa7.1□□□□□ -1.27
VPS13C-206ENST00000558338 TRIM60Q495X7 471 aa7.1□□□□□ -1.27
VPS13C-206ENST00000558338 RFTN2Q52LD8 501 aaPredicted RBP7.1□□□□□ -1.27
VPS13C-206ENST00000558338 HABP4Q5JVS0 413 aaKnown RBP7.1□□□□□ -1.27
VPS13C-206ENST00000558338 DGKKQ5KSL6 1271 aa7.1□□□□□ -1.27
VPS13C-206ENST00000558338 ATG9BQ674R7 924 aa7.1□□□□□ -1.27
VPS13C-206ENST00000558338 BRAT1Q6PJG6 821 aa7.1□□□□□ -1.27
VPS13C-206ENST00000558338 UBE2R2Q712K3 238 aaPredicted RBP7.1□□□□□ -1.27
VPS13C-206ENST00000558338 GAREM2Q75VX8 874 aa7.1□□□□□ -1.27
VPS13C-206ENST00000558338 RTL10Q7L3V2 364 aa7.1□□□□□ -1.27
VPS13C-206ENST00000558338 GPR141Q7Z602 305 aa7.1□□□□□ -1.27
VPS13C-206ENST00000558338 RIMKLAQ8IXN7 391 aa7.1□□□□□ -1.27
VPS13C-206ENST00000558338 ZNF786Q8N393 782 aa7.1□□□□□ -1.27
VPS13C-206ENST00000558338 TMEM132CQ8N3T6 1108 aa7.1□□□□□ -1.27
VPS13C-206ENST00000558338 SVOPLQ8N434 492 aa7.1□□□□□ -1.27
VPS13C-206ENST00000558338 LIX1Q8N485 282 aa7.1□□□□□ -1.27
VPS13C-206ENST00000558338 CLDN19Q8N6F1 224 aa7.1□□□□□ -1.27
VPS13C-206ENST00000558338 GPR26Q8NDV2 337 aa7.1□□□□□ -1.27
VPS13C-206ENST00000558338 ADAMTS16Q8TE57 1224 aa7.1□□□□□ -1.27
VPS13C-206ENST00000558338 CYGBQ8WWM9 190 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms