RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 SPPL2BQ8TCT7 592 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 NELL1Q92832 810 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 FIZ1Q96SL8 496 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 FAM213AQ9BRX8 229 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 OSGEPL1Q9H4B0 414 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 IL1RAPQ9NPH3 570 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 MTMR10Q9NXD2 777 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 MTMR4Q9NYA4 1195 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 SLC17A6Q9P2U8 582 aa13.54□□□□□ -0.24
SHMT2-226ENST00000556825 APOC4-APOC2K7ER74 178 aa13.53□□□□□ -0.24
SHMT2-226ENST00000556825 PITPNM1O00562 1244 aa13.53□□□□□ -0.24
SHMT2-226ENST00000556825 AKAP8O43823 692 aaKnown RBP13.53□□□□□ -0.24
SHMT2-226ENST00000556825 EIF3GO75821 320 aaKnown RBP eCLIP13.53□□□□□ -0.24
SHMT2-226ENST00000556825 APOC2P02655 101 aa13.53□□□□□ -0.24
SHMT2-226ENST00000556825 FMO3P31513 532 aa13.53□□□□□ -0.24
SHMT2-226ENST00000556825 PREPP48147 710 aa13.53□□□□□ -0.24
SHMT2-226ENST00000556825 PPP3CCP48454 512 aa13.53□□□□□ -0.24
SHMT2-226ENST00000556825 NRIP1P48552 1158 aa13.53□□□□□ -0.24
SHMT2-226ENST00000556825 CSTF1Q05048 431 aaKnown RBP13.53□□□□□ -0.24
SHMT2-226ENST00000556825 DSG2Q14126 1118 aa13.53□□□□□ -0.24
SHMT2-226ENST00000556825 FGL2Q14314 439 aa13.53□□□□□ -0.24
SHMT2-226ENST00000556825 SBK1Q52WX2 424 aa13.53□□□□□ -0.24
SHMT2-226ENST00000556825 TCTE1Q5JU00 501 aa13.53□□□□□ -0.24
SHMT2-226ENST00000556825 ZNF772Q68DY9 489 aaPredicted RBP13.53□□□□□ -0.24
SHMT2-226ENST00000556825 XRRA1Q6P2D8 792 aa13.53□□□□□ -0.24
SHMT2-226ENST00000556825 RTL4Q6ZR62 310 aa13.53□□□□□ -0.24
SHMT2-226ENST00000556825 KRT74Q7RTS7 529 aa13.53□□□□□ -0.24
SHMT2-226ENST00000556825 STRA8Q7Z7C7 330 aa13.53□□□□□ -0.24
SHMT2-226ENST00000556825 ZC3HC1Q86WB0 502 aaKnown RBP13.53□□□□□ -0.24
SHMT2-226ENST00000556825 ZNF444Q8N0Y2 327 aaPredicted RBP13.53□□□□□ -0.24
SHMT2-226ENST00000556825 KLHL36Q8N4N3 616 aa13.53□□□□□ -0.24
SHMT2-226ENST00000556825 CLHC1Q8NHS4 586 aa13.53□□□□□ -0.24
SHMT2-226ENST00000556825 FCGR1BQ92637 280 aa13.53□□□□□ -0.24
SHMT2-226ENST00000556825 MYO19Q96H55 970 aa13.53□□□□□ -0.24
SHMT2-226ENST00000556825 Q96MT0 163 aa13.53□□□□□ -0.24
SHMT2-226ENST00000556825 OR5M11Q96RB7 305 aa13.53□□□□□ -0.24
SHMT2-226ENST00000556825 KCNS3Q9BQ31 491 aa13.53□□□□□ -0.24
SHMT2-226ENST00000556825 TMEM47Q9BQJ4 181 aa13.53□□□□□ -0.24
SHMT2-226ENST00000556825 PTDSS2Q9BVG9 487 aa13.53□□□□□ -0.24
SHMT2-226ENST00000556825 C1QTNF6Q9BXI9 259 aa13.53□□□□□ -0.24
SHMT2-226ENST00000556825 NMRAL1Q9HBL8 299 aa13.53□□□□□ -0.24
SHMT2-226ENST00000556825 ACSS2Q9NR19 701 aa13.53□□□□□ -0.24
SHMT2-226ENST00000556825 MAP10Q9P2G4 905 aa13.53□□□□□ -0.24
SHMT2-226ENST00000556825 TJP2Q9UDY2 1190 aa13.53□□□□□ -0.24
SHMT2-226ENST00000556825 INVSQ9Y283 1065 aa13.53□□□□□ -0.24
SHMT2-226ENST00000556825 CBY1Q9Y3M2 126 aa13.53□□□□□ -0.24
SHMT2-226ENST00000556825 MAB21L2Q9Y586 359 aa13.53□□□□□ -0.24
SHMT2-226ENST00000556825 SLC9B1P1A6NJY1 282 aa13.52□□□□□ -0.24
SHMT2-226ENST00000556825 ASB14A6NK59 587 aa13.52□□□□□ -0.24
SHMT2-226ENST00000556825 HOXD8P13378 290 aaPredicted RBP13.52□□□□□ -0.24
SHMT2-226ENST00000556825 FNTBP49356 437 aa13.52□□□□□ -0.24
SHMT2-226ENST00000556825 CDH13P55290 713 aa13.52□□□□□ -0.24
SHMT2-226ENST00000556825 ZNF79Q15937 498 aa13.52□□□□□ -0.24
SHMT2-226ENST00000556825 PDZK1Q5T2W1 519 aa13.52□□□□□ -0.24
SHMT2-226ENST00000556825 LDLRAD1Q5T700 205 aa13.52□□□□□ -0.24
SHMT2-226ENST00000556825 STEAP4Q687X5 459 aa13.52□□□□□ -0.24
SHMT2-226ENST00000556825 LUZP2Q86TE4 346 aa13.52□□□□□ -0.24
SHMT2-226ENST00000556825 EDARADDQ8WWZ3 215 aa13.52□□□□□ -0.24
SHMT2-226ENST00000556825 RPL10LQ96L21 214 aaKnown RBP13.52□□□□□ -0.24
SHMT2-226ENST00000556825 MED18Q9BUE0 208 aa13.52□□□□□ -0.24
SHMT2-226ENST00000556825 ALG2Q9H553 416 aa13.52□□□□□ -0.24
SHMT2-226ENST00000556825 MROH8Q9H579 483 aa13.52□□□□□ -0.24
SHMT2-226ENST00000556825 IL1RL2Q9HB29 575 aa13.52□□□□□ -0.24
SHMT2-226ENST00000556825 UFSP2Q9NUQ7 469 aa13.52□□□□□ -0.24
SHMT2-226ENST00000556825 PTTG3PQ9NZH4 202 aa13.52□□□□□ -0.24
SHMT2-226ENST00000556825 EPHA6Q9UF33 1036 aa13.52□□□□□ -0.24
SHMT2-226ENST00000556825 ZNF112Q9UJU3 913 aa13.52□□□□□ -0.24
SHMT2-226ENST00000556825 M0R082 166 aa13.52□□□□□ -0.25
SHMT2-226ENST00000556825 PROM1O43490 865 aa13.52□□□□□ -0.25
SHMT2-226ENST00000556825 CCNB2O95067 398 aa13.52□□□□□ -0.25
SHMT2-226ENST00000556825 HLA-EP13747 358 aa13.52□□□□□ -0.25
SHMT2-226ENST00000556825 PRF1P14222 555 aa13.52□□□□□ -0.25
SHMT2-226ENST00000556825 CD72P21854 359 aa13.52□□□□□ -0.25
SHMT2-226ENST00000556825 PSMA2P25787 234 aa13.52□□□□□ -0.25
SHMT2-226ENST00000556825 ALDH9A1P49189 494 aa13.52□□□□□ -0.25
SHMT2-226ENST00000556825 LIMK1P53667 647 aa13.52□□□□□ -0.25
SHMT2-226ENST00000556825 PSMD4P55036 377 aaKnown RBP13.52□□□□□ -0.25
SHMT2-226ENST00000556825 RNF4P78317 190 aa13.52□□□□□ -0.25
SHMT2-226ENST00000556825 PSPHP78330 225 aa13.52□□□□□ -0.25
SHMT2-226ENST00000556825 FGL1Q08830 312 aa13.52□□□□□ -0.25
SHMT2-226ENST00000556825 CDKL4Q5MAI5 379 aa13.52□□□□□ -0.25
SHMT2-226ENST00000556825 SHQ1Q6PI26 577 aaKnown RBP13.52□□□□□ -0.25
SHMT2-226ENST00000556825 CNSTQ6PJW8 725 aa13.52□□□□□ -0.25
SHMT2-226ENST00000556825 RASSF6Q6ZTQ3 369 aa13.52□□□□□ -0.25
SHMT2-226ENST00000556825 C16orf86Q6ZW13 317 aa13.52□□□□□ -0.25
SHMT2-226ENST00000556825 SLC46A3Q7Z3Q1 461 aa13.52□□□□□ -0.25
SHMT2-226ENST00000556825 CLEC14AQ86T13 490 aa13.52□□□□□ -0.25
SHMT2-226ENST00000556825 MIB1Q86YT6 1006 aa13.52□□□□□ -0.25
SHMT2-226ENST00000556825 ZNF540Q8NDQ6 660 aa13.52□□□□□ -0.25
SHMT2-226ENST00000556825 CPB2Q96IY4 423 aa13.52□□□□□ -0.25
SHMT2-226ENST00000556825 PAWRQ96IZ0 340 aaKnown RBP13.52□□□□□ -0.25
SHMT2-226ENST00000556825 CELF6Q96J87 481 aaKnown RBP13.52□□□□□ -0.25
SHMT2-226ENST00000556825 RIT2Q99578 217 aa13.52□□□□□ -0.25
SHMT2-226ENST00000556825 P2RY13Q9BPV8 354 aa13.52□□□□□ -0.25
SHMT2-226ENST00000556825 RBM4BQ9BQ04 359 aaKnown RBP13.52□□□□□ -0.25
SHMT2-226ENST00000556825 RBM4Q9BWF3 364 aaKnown RBP13.52□□□□□ -0.25
SHMT2-226ENST00000556825 KCNH6Q9H252 994 aa13.52□□□□□ -0.25
SHMT2-226ENST00000556825 DCP1AQ9NPI6 582 aaPredicted RBP13.52□□□□□ -0.25
SHMT2-226ENST00000556825 LAMP5Q9UJQ1 280 aa13.52□□□□□ -0.25
SHMT2-226ENST00000556825 COL24A1Q17RW2 1714 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms