RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 NCF1CA8MVU1 366 aaPredicted RBP13.63□□□□□ -0.23
VIPAS39-208ENST00000556412 DUX1O43812 170 aa13.63□□□□□ -0.23
VIPAS39-208ENST00000556412 GP1BAP07359 652 aa13.63□□□□□ -0.23
VIPAS39-208ENST00000556412 MYZAPP0CAP1 466 aa13.63□□□□□ -0.23
VIPAS39-208ENST00000556412 TPBGLP0DKB5 382 aa13.63□□□□□ -0.23
VIPAS39-208ENST00000556412 CEACAM1P13688 526 aa13.63□□□□□ -0.23
VIPAS39-208ENST00000556412 NCF1P14598 390 aaPredicted RBP13.63□□□□□ -0.23
VIPAS39-208ENST00000556412 KRT4P19013 534 aa13.63□□□□□ -0.23
VIPAS39-208ENST00000556412 SHMT2P34897 504 aa13.63□□□□□ -0.23
VIPAS39-208ENST00000556412 GRB7Q14451 532 aa13.63□□□□□ -0.23
VIPAS39-208ENST00000556412 OR4D1Q15615 310 aa13.63□□□□□ -0.23
VIPAS39-208ENST00000556412 ARMC6Q6NXE6 501 aa13.63□□□□□ -0.23
VIPAS39-208ENST00000556412 SBSNQ6UWP8 590 aa13.63□□□□□ -0.23
VIPAS39-208ENST00000556412 CROCCP2Q86T23 111 aa13.63□□□□□ -0.23
VIPAS39-208ENST00000556412 OR9A1PQ8NGU1 263 aa13.63□□□□□ -0.23
VIPAS39-208ENST00000556412 RSC1A1Q92681 617 aa13.63□□□□□ -0.23
VIPAS39-208ENST00000556412 PTERQ96BW5 349 aa13.63□□□□□ -0.23
VIPAS39-208ENST00000556412 EGFL8Q99944 293 aa13.63□□□□□ -0.23
VIPAS39-208ENST00000556412 TFB2MQ9H5Q4 396 aaKnown RBP13.63□□□□□ -0.23
VIPAS39-208ENST00000556412 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.63□□□□□ -0.23
VIPAS39-208ENST00000556412 LNPEPQ9UIQ6 1025 aa13.63□□□□□ -0.23
VIPAS39-208ENST00000556412 ATXN7L1Q9ULK2 861 aaPredicted RBP13.63□□□□□ -0.23
VIPAS39-208ENST00000556412 TP53BP1Q12888 1972 aaPredicted RBP13.63□□□□□ -0.23
VIPAS39-208ENST00000556412 GVINP1Q7Z2Y8 2422 aa13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 GSAPA4D1B5 854 aa13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 KCNK5O95279 499 aa13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 FTH1P19P0C7X4 201 aa13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 POLR2CP19387 275 aaPredicted RBP13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 RAB28P51157 221 aa13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 EPHA4P54764 986 aa13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 NR1D2Q14995 579 aa13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 KLHL35Q6PF15 583 aa13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 DHRS13Q6UX07 377 aa13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 GLRX5Q86SX6 157 aa13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 OOSP2Q86WS3 158 aa13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 GPSM1Q86YR5 675 aa13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 SYTL1Q8IYJ3 562 aa13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 ACMSDQ8TDX5 336 aa13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 ANKRD7Q92527 254 aa13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 KIAA1191Q96A73 305 aa13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 LRRN3Q9H3W5 708 aa13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 HRASLS2Q9NWW9 162 aa13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 TOR4AQ9NXH8 423 aa13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 KLHL3Q9UH77 587 aa13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 RALGAPA1Q6GYQ0 2036 aa13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 ZNF292O60281 2723 aa13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 A0A1W2PQM1 296 aa13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 MYO1CO00159 1063 aa13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 SLC16A8O95907 504 aa13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 ENO2P09104 434 aaPredicted RBP13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 COL6A2P12110 1019 aa13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 MPSTP25325 297 aa13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 CD1CP29017 333 aa13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 PKLRP30613 574 aa13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 CAPZBP47756 277 aa13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 GPLD1P80108 840 aa13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 PRKAA1Q13131 559 aa13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 ILKQ13418 452 aa13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 ACAP2Q15057 778 aa13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 PPP1R3AQ16821 1122 aa13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 TSNAXIP1Q2TAA8 658 aa13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 IRGCQ6NXR0 463 aa13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 ISCA2Q86U28 154 aa13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 SLCO6A1Q86UG4 719 aa13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 TRABD2AQ86V40 505 aa13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 PPFIBP2Q8ND30 876 aa13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 STAG3L4Q8TBR4 150 aa13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 ALKBH8Q96BT7 664 aaKnown RBP13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 CCDC138Q96M89 665 aa13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 GFM1Q96RP9 751 aaKnown RBP13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 RAB11FIP5Q9BXF6 653 aa13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 CD274Q9NZQ7 290 aa13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 APOBEC2Q9Y235 224 aaKnown RBP13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 OARD1Q9Y530 152 aa13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 RIF1Q5UIP0 2472 aaKnown RBP13.62□□□□□ -0.23
VIPAS39-208ENST00000556412 OR5K3A6NET4 321 aa13.61□□□□□ -0.23
VIPAS39-208ENST00000556412 SUPT3HB4E1H0 165 aa13.61□□□□□ -0.23
VIPAS39-208ENST00000556412 BTN3A3O00478 584 aa13.61□□□□□ -0.23
VIPAS39-208ENST00000556412 COPEO14579 308 aa13.61□□□□□ -0.23
VIPAS39-208ENST00000556412 OPA1O60313 960 aa13.61□□□□□ -0.23
VIPAS39-208ENST00000556412 SUPT3HO75486 399 aa13.61□□□□□ -0.23
VIPAS39-208ENST00000556412 S100BP04271 92 aaPredicted RBP13.61□□□□□ -0.23
VIPAS39-208ENST00000556412 KPNA2P52292 529 aaKnown RBP13.61□□□□□ -0.23
VIPAS39-208ENST00000556412 CLDN6P56747 220 aa13.61□□□□□ -0.23
VIPAS39-208ENST00000556412 SPIDRQ14159 915 aa13.61□□□□□ -0.23
VIPAS39-208ENST00000556412 SNAP47Q5SQN1 464 aa13.61□□□□□ -0.23
VIPAS39-208ENST00000556412 ANKS6Q68DC2 871 aa13.61□□□□□ -0.23
VIPAS39-208ENST00000556412 CLEC14AQ86T13 490 aa13.61□□□□□ -0.23
VIPAS39-208ENST00000556412 RASGRP3Q8IV61 690 aa13.61□□□□□ -0.23
VIPAS39-208ENST00000556412 FBXO15Q8NCQ5 510 aaPredicted RBP13.61□□□□□ -0.23
VIPAS39-208ENST00000556412 DENND1AQ8TEH3 1009 aa13.61□□□□□ -0.23
VIPAS39-208ENST00000556412 MED8Q96G25 268 aa13.61□□□□□ -0.23
VIPAS39-208ENST00000556412 TGM7Q96PF1 710 aa13.61□□□□□ -0.23
VIPAS39-208ENST00000556412 SMC6Q96SB8 1091 aa13.61□□□□□ -0.23
VIPAS39-208ENST00000556412 NUDT22Q9BRQ3 303 aa13.61□□□□□ -0.23
VIPAS39-208ENST00000556412 ATG10Q9H0Y0 220 aa13.61□□□□□ -0.23
VIPAS39-208ENST00000556412 OR6C2Q9NZP2 312 aa13.61□□□□□ -0.23
VIPAS39-208ENST00000556412 OGFRQ9NZT2 677 aa13.61□□□□□ -0.23
VIPAS39-208ENST00000556412 SPATA7Q9P0W8 599 aa13.61□□□□□ -0.23
VIPAS39-208ENST00000556412 CPSF2Q9P2I0 782 aaKnown RBP13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms