RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 MYO19Q96H55 970 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 EGLN2Q96KS0 407 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 CCDC115Q96NT0 180 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 TSSK3Q96PN8 268 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 ZBTB18Q99592 522 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 TUBA1CQ9BQE3 449 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 FEM1AQ9BSK4 669 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 TTPALQ9BTX7 342 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 CLMPQ9H6B4 373 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 KAT8Q9H7Z6 458 aaKnown RBP7.33□□□□□ -1.24
LIMA1-213ENST00000552720 ZFYVE1Q9HBF4 777 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 LRTM1Q9HBL6 345 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 SERHLQ9NQF3 203 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 LATS2Q9NRM7 1088 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 RNF186Q9NXI6 227 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 GPRC5BQ9NZH0 403 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 TMEFF2Q9UIK5 374 aaPredicted RBP7.33□□□□□ -1.24
LIMA1-213ENST00000552720 PDE10AQ9Y233 779 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 PCDHB7Q9Y5E2 793 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 PCDHB1Q9Y5F3 818 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 HELZP42694 1942 aaKnown RBP7.33□□□□□ -1.24
LIMA1-213ENST00000552720 NINQ8N4C6 2090 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 TRBV5-3A0A0A0MS03 114 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 LOC100130705A0A1B0GUX0 176 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 SLC1A7O00341 560 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 MANBAO00462 879 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 E2F6O75461 281 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 PGLSO95336 258 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 PDYNP01213 254 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 FTH1P02794 183 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 ZNF7P17097 686 aaPredicted RBP7.33□□□□□ -1.24
LIMA1-213ENST00000552720 BPIP17213 487 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 GSTM2P28161 218 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 ALDH4A1P30038 563 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 HNF1BP35680 557 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 TMBIM6P55061 237 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 GP2P55259 537 aaKnown RBP7.33□□□□□ -1.24
LIMA1-213ENST00000552720 IL1RL1Q01638 556 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 RAPSNQ13702 412 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 NR1D2Q14995 579 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 SKIV2LQ15477 1246 aaKnown RBP7.33□□□□□ -1.24
LIMA1-213ENST00000552720 CHRNA6Q15825 494 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 MOGQ16653 247 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 ACBD5Q5T8D3 534 aaPredicted RBP7.33□□□□□ -1.24
LIMA1-213ENST00000552720 DCDC5Q6ZRR9 648 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 PRR23BQ6ZRT6 265 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 CHST9Q7L1S5 443 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 SAPCD2Q86UD0 394 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 MICU2Q8IYU8 434 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 STK40Q8N2I9 435 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 CENPSQ8N2Z9 138 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 ZBTB2Q8N680 514 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 PCSK9Q8NBP7 692 aaKnown RBP7.33□□□□□ -1.24
LIMA1-213ENST00000552720 PJA1Q8NG27 643 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 HDAC2Q92769 488 aaKnown RBP7.33□□□□□ -1.24
LIMA1-213ENST00000552720 PYCR2Q96C36 320 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 ERLEC1Q96DZ1 483 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 BEGAINQ9BUH8 593 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 VN1R3Q9BXE9 311 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 ACPTQ9BZG2 426 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 TNKS2Q9H2K2 1166 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 DCAF13Q9NV06 445 aaKnown RBP7.33□□□□□ -1.24
LIMA1-213ENST00000552720 PSME2Q9UL46 239 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 CLEC4EQ9ULY5 219 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 PPT2Q9UMR5 302 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 VPS4AQ9UN37 437 aa7.33□□□□□ -1.24
LIMA1-213ENST00000552720 TBKBP1A7MCY6 615 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 ZSCAN9O15535 394 aaPredicted RBP7.32□□□□□ -1.24
LIMA1-213ENST00000552720 BNIP3LO60238 219 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 BCAS1O75363 584 aaPredicted RBP7.32□□□□□ -1.24
LIMA1-213ENST00000552720 HPRP00739 348 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 EFNA1P20827 205 aaPredicted RBP7.32□□□□□ -1.24
LIMA1-213ENST00000552720 DGKAP23743 735 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 ACRV1P26436 265 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 CST5P28325 142 aaPredicted RBP7.32□□□□□ -1.24
LIMA1-213ENST00000552720 FMO3P31513 532 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 IDUAP35475 653 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 OPRL1P41146 370 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 GZMMP51124 257 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 LSM3P62310 102 aaKnown RBP7.32□□□□□ -1.24
LIMA1-213ENST00000552720 SIM2Q14190 667 aaPredicted RBP7.32□□□□□ -1.24
LIMA1-213ENST00000552720 PGS1Q32NB8 556 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 CARD16Q5EG05 197 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 LRRC73Q5JTD7 316 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 RBM48Q5RL73 367 aaKnown RBP7.32□□□□□ -1.24
LIMA1-213ENST00000552720 GPRC6AQ5T6X5 926 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 TTC23Q5W5X9 447 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 ANKS3Q6ZW76 656 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 CEP68Q76N32 757 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 CYP4Z1Q86W10 505 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 DCP2Q8IU60 420 aaKnown RBP7.32□□□□□ -1.24
LIMA1-213ENST00000552720 DDHD1Q8NEL9 900 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 ZNF555Q8NEP9 628 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 RAB2BQ8WUD1 216 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 PLD4Q96BZ4 506 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 ULK4Q96C45 1275 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 CCDC138Q96M89 665 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 KLF16Q9BXK1 252 aaPredicted RBP7.32□□□□□ -1.24
LIMA1-213ENST00000552720 CWH43Q9H720 699 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 MAGEE1Q9HCI5 957 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms