RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 RGMBQ6NW40 437 aa14.7□□□□□ -0.06
USP28-214ENST00000545540 NECAB2Q7Z6G3 386 aa14.7□□□□□ -0.06
USP28-214ENST00000545540 DDHD1Q8NEL9 900 aa14.7□□□□□ -0.06
USP28-214ENST00000545540 SELENOMQ8WWX9 145 aa14.7□□□□□ -0.06
USP28-214ENST00000545540 PEX13Q92968 403 aa14.7□□□□□ -0.06
USP28-214ENST00000545540 ACPTQ9BZG2 426 aa14.7□□□□□ -0.06
USP28-214ENST00000545540 ERVK-18Q9QC07 812 aa14.7□□□□□ -0.06
USP28-214ENST00000545540 TRIM64CA6NLI5 447 aa14.7□□□□□ -0.06
USP28-214ENST00000545540 PFDN6O15212 129 aa14.7□□□□□ -0.06
USP28-214ENST00000545540 TBC1D4O60343 1298 aa14.7□□□□□ -0.06
USP28-214ENST00000545540 CPSF4O95639 269 aaKnown RBP14.7□□□□□ -0.06
USP28-214ENST00000545540 ZDHHC11BP0C7U3 371 aa14.7□□□□□ -0.06
USP28-214ENST00000545540 FCGRTP55899 365 aa14.7□□□□□ -0.06
USP28-214ENST00000545540 VBP1P61758 197 aa14.7□□□□□ -0.06
USP28-214ENST00000545540 TSTA3Q13630 321 aaPredicted RBP14.7□□□□□ -0.06
USP28-214ENST00000545540 CARD16Q5EG05 197 aa14.7□□□□□ -0.06
USP28-214ENST00000545540 LAIR1Q6GTX8 287 aa14.7□□□□□ -0.06
USP28-214ENST00000545540 ADAMTSL2Q86TH1 951 aa14.7□□□□□ -0.06
USP28-214ENST00000545540 ZNF554Q86TJ5 538 aa14.7□□□□□ -0.06
USP28-214ENST00000545540 VRK3Q8IV63 474 aa14.7□□□□□ -0.06
USP28-214ENST00000545540 TMCO5AQ8N6Q1 288 aa14.7□□□□□ -0.06
USP28-214ENST00000545540 ZNF555Q8NEP9 628 aa14.7□□□□□ -0.06
USP28-214ENST00000545540 RHBDF1Q96CC6 855 aa14.7□□□□□ -0.06
USP28-214ENST00000545540 MYO19Q96H55 970 aa14.7□□□□□ -0.06
USP28-214ENST00000545540 TRNAU1APQ9NX07 287 aaKnown RBP14.7□□□□□ -0.06
USP28-214ENST00000545540 NUDT4Q9NZJ9 180 aa14.7□□□□□ -0.06
USP28-214ENST00000545540 LOC100130705A0A1B0GUX0 176 aa14.7□□□□□ -0.06
USP28-214ENST00000545540 BCAS1O75363 584 aaPredicted RBP14.7□□□□□ -0.06
USP28-214ENST00000545540 NTRK1P04629 796 aa14.7□□□□□ -0.06
USP28-214ENST00000545540 ZNF7P17097 686 aaPredicted RBP14.7□□□□□ -0.06
USP28-214ENST00000545540 DCTP40126 519 aa14.7□□□□□ -0.06
USP28-214ENST00000545540 SPOUT1Q5T280 376 aaKnown RBP14.7□□□□□ -0.06
USP28-214ENST00000545540 EGFLAMQ63HQ2 1017 aa14.7□□□□□ -0.06
USP28-214ENST00000545540 ALG1LQ6GMV1 187 aa14.7□□□□□ -0.06
USP28-214ENST00000545540 APIPQ96GX9 242 aa14.7□□□□□ -0.06
USP28-214ENST00000545540 ABT1Q9ULW3 272 aaKnown RBP14.7□□□□□ -0.06
USP28-214ENST00000545540 CHD5Q8TDI0 1954 aa14.7□□□□□ -0.06
USP28-214ENST00000545540 HMGA1P17096 107 aaKnown RBP14.69□□□□□ -0.06
USP28-214ENST00000545540 MAGP20916 626 aa14.69□□□□□ -0.06
USP28-214ENST00000545540 HMGCLP35914 325 aa14.69□□□□□ -0.06
USP28-214ENST00000545540 ZCCHC8Q6NZY4 707 aaKnown RBP14.69□□□□□ -0.06
USP28-214ENST00000545540 SERPINA13PQ6UXR4 307 aa14.69□□□□□ -0.06
USP28-214ENST00000545540 Q6ZNX1 250 aa14.69□□□□□ -0.06
USP28-214ENST00000545540 TRIM74Q86UV6 250 aa14.69□□□□□ -0.06
USP28-214ENST00000545540 TRIM73Q86UV7 250 aa14.69□□□□□ -0.06
USP28-214ENST00000545540 CYP4Z1Q86W10 505 aa14.69□□□□□ -0.06
USP28-214ENST00000545540 DPP10Q8N608 796 aa14.69□□□□□ -0.06
USP28-214ENST00000545540 GPR26Q8NDV2 337 aa14.69□□□□□ -0.06
USP28-214ENST00000545540 OR7A2PQ8NGA2 310 aa14.69□□□□□ -0.06
USP28-214ENST00000545540 ADAMTS16Q8TE57 1224 aa14.69□□□□□ -0.06
USP28-214ENST00000545540 RPL3LQ92901 407 aaKnown RBP14.69□□□□□ -0.06
USP28-214ENST00000545540 MTERF1Q99551 399 aaKnown RBP14.69□□□□□ -0.06
USP28-214ENST00000545540 C1QTNF3Q9BXJ4 246 aa14.69□□□□□ -0.06
USP28-214ENST00000545540 CD244Q9BZW8 370 aa14.69□□□□□ -0.06
USP28-214ENST00000545540 TRPM5Q9NZQ8 1165 aa14.69□□□□□ -0.06
USP28-214ENST00000545540 ZNF639Q9UID6 485 aa14.69□□□□□ -0.06
USP28-214ENST00000545540 TYW5A2RUC4 315 aaKnown RBP14.69□□□□□ -0.06
USP28-214ENST00000545540 RGS14O43566 566 aa14.69□□□□□ -0.06
USP28-214ENST00000545540 IDUAP35475 653 aa14.69□□□□□ -0.06
USP28-214ENST00000545540 RXRGP48443 463 aa14.69□□□□□ -0.06
USP28-214ENST00000545540 ATN1P54259 1190 aaPredicted RBP14.69□□□□□ -0.06
USP28-214ENST00000545540 GPNMBQ14956 572 aa14.69□□□□□ -0.06
USP28-214ENST00000545540 GRAMD4Q6IC98 578 aa14.69□□□□□ -0.06
USP28-214ENST00000545540 FAM180BQ6P0A1 224 aa14.69□□□□□ -0.06
USP28-214ENST00000545540 EFL1Q7Z2Z2 1120 aaKnown RBP14.69□□□□□ -0.06
USP28-214ENST00000545540 PIH1D2Q8WWB5 315 aa14.69□□□□□ -0.06
USP28-214ENST00000545540 OSBPL10Q9BXB5 764 aa14.69□□□□□ -0.06
USP28-214ENST00000545540 STARD7Q9NQZ5 370 aa14.69□□□□□ -0.06
USP28-214ENST00000545540 ERVK-11Q9UQG0 969 aa14.69□□□□□ -0.06
USP28-214ENST00000545540 SLC22A14Q9Y267 594 aa14.69□□□□□ -0.06
USP28-214ENST00000545540 IFRD1O00458 451 aaPredicted RBP14.69□□□□□ -0.06
USP28-214ENST00000545540 MANBAO00462 879 aa14.69□□□□□ -0.06
USP28-214ENST00000545540 EPB42P16452 691 aa14.69□□□□□ -0.06
USP28-214ENST00000545540 TNFRSF1BP20333 461 aa14.69□□□□□ -0.06
USP28-214ENST00000545540 RPIAP49247 311 aa14.69□□□□□ -0.06
USP28-214ENST00000545540 COL9A2Q14055 689 aaPredicted RBP14.69□□□□□ -0.06
USP28-214ENST00000545540 CACHD1Q5VU97 1274 aa14.69□□□□□ -0.06
USP28-214ENST00000545540 LSRQ86X29 649 aaPredicted RBP14.69□□□□□ -0.06
USP28-214ENST00000545540 ZBTB2Q8N680 514 aa14.69□□□□□ -0.06
USP28-214ENST00000545540 NDNFQ8TB73 568 aa14.69□□□□□ -0.06
USP28-214ENST00000545540 TPD52L3Q96J77 140 aa14.69□□□□□ -0.06
USP28-214ENST00000545540 UGT2B28Q9BY64 529 aa14.69□□□□□ -0.06
USP28-214ENST00000545540 PPT2Q9UMR5 302 aa14.69□□□□□ -0.06
USP28-214ENST00000545540 COQ6Q9Y2Z9 468 aa14.69□□□□□ -0.06
USP28-214ENST00000545540 TRIM64A6NGJ6 449 aa14.68□□□□□ -0.06
USP28-214ENST00000545540 NPIPB15A6NHN6 443 aaPredicted RBP14.68□□□□□ -0.06
USP28-214ENST00000545540 ABCB7O75027 752 aa14.68□□□□□ -0.06
USP28-214ENST00000545540 FKBP9O95302 570 aa14.68□□□□□ -0.06
USP28-214ENST00000545540 FADS2O95864 444 aaKnown RBP14.68□□□□□ -0.06
USP28-214ENST00000545540 JAK1P23458 1154 aa14.68□□□□□ -0.06
USP28-214ENST00000545540 KPNA1P52294 538 aaPredicted RBP14.68□□□□□ -0.06
USP28-214ENST00000545540 DNASE1L3Q13609 305 aa14.68□□□□□ -0.06
USP28-214ENST00000545540 PCBP2Q15366 365 aaKnown RBP eCLIP14.68□□□□□ -0.06
USP28-214ENST00000545540 ZNF829Q3KNS6 432 aaPredicted RBP14.68□□□□□ -0.06
USP28-214ENST00000545540 DCDC5Q6ZRR9 648 aa14.68□□□□□ -0.06
USP28-214ENST00000545540 ZNF621Q6ZSS3 439 aa14.68□□□□□ -0.06
USP28-214ENST00000545540 FKBP9P1Q75LS8 142 aa14.68□□□□□ -0.06
USP28-214ENST00000545540 MAL2Q969L2 176 aa14.68□□□□□ -0.06
USP28-214ENST00000545540 TMEM161AQ9NX61 479 aa14.68□□□□□ -0.06
USP28-214ENST00000545540 DNAJB9Q9UBS3 223 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms