RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 NDC1Q9BTX1 674 aa12.67□□□□□ -0.38
RTN3-212ENST00000543123 CARD6Q9BX69 1037 aa12.67□□□□□ -0.38
RTN3-212ENST00000543123 RAB11FIP5Q9BXF6 653 aa12.67□□□□□ -0.38
RTN3-212ENST00000543123 AP1M1Q9BXS5 423 aa12.67□□□□□ -0.38
RTN3-212ENST00000543123 MLXIPLQ9NP71 852 aa12.67□□□□□ -0.38
RTN3-212ENST00000543123 CASS4Q9NQ75 786 aa12.67□□□□□ -0.38
RTN3-212ENST00000543123 EIF2B3Q9NR50 452 aaKnown RBP12.67□□□□□ -0.38
RTN3-212ENST00000543123 CATSPERZQ9NTU4 200 aa12.67□□□□□ -0.38
RTN3-212ENST00000543123 INTS7Q9NVH2 962 aaKnown RBP12.67□□□□□ -0.38
RTN3-212ENST00000543123 NDOR1Q9UHB4 597 aa12.67□□□□□ -0.38
RTN3-212ENST00000543123 GUCA1BQ9UMX6 200 aa12.67□□□□□ -0.38
RTN3-212ENST00000543123 VPS4AQ9UN37 437 aa12.67□□□□□ -0.38
RTN3-212ENST00000543123 PLAAQ9Y263 795 aa12.67□□□□□ -0.38
RTN3-212ENST00000543123 ZKSCAN5Q9Y2L8 839 aa12.67□□□□□ -0.38
RTN3-212ENST00000543123 RP1L1Q8IWN7 2480 aaPredicted RBP12.66□□□□□ -0.38
RTN3-212ENST00000543123 BHMG1C9JSJ3 638 aaPredicted RBP12.66□□□□□ -0.38
RTN3-212ENST00000543123 PEX12O00623 359 aa12.66□□□□□ -0.38
RTN3-212ENST00000543123 KPNA5O15131 536 aa12.66□□□□□ -0.38
RTN3-212ENST00000543123 PFDN6O15212 129 aa12.66□□□□□ -0.38
RTN3-212ENST00000543123 OR1I1O60431 355 aa12.66□□□□□ -0.38
RTN3-212ENST00000543123 CEACAM4O75871 244 aa12.66□□□□□ -0.38
RTN3-212ENST00000543123 CAPN1P07384 714 aa12.66□□□□□ -0.38
RTN3-212ENST00000543123 PKLRP30613 574 aa12.66□□□□□ -0.38
RTN3-212ENST00000543123 FOLR3P41439 243 aa12.66□□□□□ -0.38
RTN3-212ENST00000543123 MLLT10P55197 1068 aa12.66□□□□□ -0.38
RTN3-212ENST00000543123 DCDP81605 110 aaKnown RBP12.66□□□□□ -0.38
RTN3-212ENST00000543123 HSPA14Q0VDF9 509 aa12.66□□□□□ -0.38
RTN3-212ENST00000543123 LRRC6Q86X45 466 aa12.66□□□□□ -0.38
RTN3-212ENST00000543123 MPP5Q8N3R9 675 aa12.66□□□□□ -0.38
RTN3-212ENST00000543123 C1orf54Q8WWF1 131 aa12.66□□□□□ -0.38
RTN3-212ENST00000543123 DLG3Q92796 817 aa12.66□□□□□ -0.38
RTN3-212ENST00000543123 COL26A1Q96A83 441 aa12.66□□□□□ -0.38
RTN3-212ENST00000543123 FER1L6-AS2Q96M78 137 aa12.66□□□□□ -0.38
RTN3-212ENST00000543123 PANX3Q96QZ0 392 aa12.66□□□□□ -0.38
RTN3-212ENST00000543123 IL22Q9GZX6 179 aa12.66□□□□□ -0.38
RTN3-212ENST00000543123 GPR83Q9NYM4 423 aa12.66□□□□□ -0.38
RTN3-212ENST00000543123 IFT80Q9P2H3 777 aaPredicted RBP12.66□□□□□ -0.38
RTN3-212ENST00000543123 ANKMY1Q9P2S6 941 aa12.66□□□□□ -0.38
RTN3-212ENST00000543123 SLC2A6Q9UGQ3 507 aa12.66□□□□□ -0.38
RTN3-212ENST00000543123 GNPTGQ9UJJ9 305 aa12.66□□□□□ -0.38
RTN3-212ENST00000543123 PLCL2Q9UPR0 1127 aa12.66□□□□□ -0.38
RTN3-212ENST00000543123 NAV2Q8IVL1 2488 aa12.66□□□□□ -0.38
RTN3-212ENST00000543123 A0A0U1RQJ8 604 aa12.65□□□□□ -0.38
RTN3-212ENST00000543123 PRMT5O14744 637 aaPredicted RBP12.65□□□□□ -0.38
RTN3-212ENST00000543123 FKBP9O95302 570 aa12.65□□□□□ -0.38
RTN3-212ENST00000543123 S1PR4O95977 384 aa12.65□□□□□ -0.38
RTN3-212ENST00000543123 PDGFAP04085 211 aa12.65□□□□□ -0.38
RTN3-212ENST00000543123 ALPPP05187 535 aa12.65□□□□□ -0.38
RTN3-212ENST00000543123 OTX2P32243 289 aa12.65□□□□□ -0.38
RTN3-212ENST00000543123 CSE1LP55060 971 aaKnown RBP12.65□□□□□ -0.38
RTN3-212ENST00000543123 SNX1Q13596 522 aa12.65□□□□□ -0.38
RTN3-212ENST00000543123 CCNG2Q16589 344 aa12.65□□□□□ -0.38
RTN3-212ENST00000543123 DEFB110Q30KQ9 67 aa12.65□□□□□ -0.38
RTN3-212ENST00000543123 PCID2Q5JVF3 399 aa12.65□□□□□ -0.38
RTN3-212ENST00000543123 MLIPQ5VWP3 458 aa12.65□□□□□ -0.38
RTN3-212ENST00000543123 ZNF385CQ66K41 422 aaPredicted RBP12.65□□□□□ -0.38
RTN3-212ENST00000543123 PTRHD1Q6GMV3 140 aaKnown RBP12.65□□□□□ -0.38
RTN3-212ENST00000543123 LCN10Q6JVE6 187 aa12.65□□□□□ -0.38
RTN3-212ENST00000543123 DRICH1Q6PGQ1 229 aaPredicted RBP12.65□□□□□ -0.38
RTN3-212ENST00000543123 GSTA5Q7RTV2 222 aa12.65□□□□□ -0.38
RTN3-212ENST00000543123 GLIS1Q8NBF1 620 aa12.65□□□□□ -0.38
RTN3-212ENST00000543123 CLEC1AQ8NC01 280 aa12.65□□□□□ -0.38
RTN3-212ENST00000543123 GALNT11Q8NCW6 608 aa12.65□□□□□ -0.38
RTN3-212ENST00000543123 CPT1CQ8TCG5 803 aa12.65□□□□□ -0.38
RTN3-212ENST00000543123 NRTNQ99748 197 aa12.65□□□□□ -0.38
RTN3-212ENST00000543123 FAM60AQ9NP50 221 aa12.65□□□□□ -0.38
RTN3-212ENST00000543123 SPHK1Q9NYA1 384 aa12.65□□□□□ -0.38
RTN3-212ENST00000543123 BFARQ9NZS9 450 aa12.65□□□□□ -0.38
RTN3-212ENST00000543123 SLC39A10Q9ULF5 831 aa12.65□□□□□ -0.38
RTN3-212ENST00000543123 DOPEY2Q9Y3R5 2298 aa12.64□□□□□ -0.39
RTN3-212ENST00000543123 SPTBP11277 2137 aa12.64□□□□□ -0.39
RTN3-212ENST00000543123 CLEC18AA5D8T8 446 aa12.64□□□□□ -0.39
RTN3-212ENST00000543123 ZNF185O15231 689 aa12.64□□□□□ -0.39
RTN3-212ENST00000543123 CD3EAPO15446 510 aaKnown RBP12.64□□□□□ -0.39
RTN3-212ENST00000543123 GPC4O75487 556 aa12.64□□□□□ -0.39
RTN3-212ENST00000543123 NDUFS3O75489 264 aa12.64□□□□□ -0.39
RTN3-212ENST00000543123 PIM1P11309 404 aaPredicted RBP12.64□□□□□ -0.39
RTN3-212ENST00000543123 CD9P21926 228 aa12.64□□□□□ -0.39
RTN3-212ENST00000543123 AOAHP28039 575 aa12.64□□□□□ -0.39
RTN3-212ENST00000543123 CCR7P32248 378 aa12.64□□□□□ -0.39
RTN3-212ENST00000543123 GRIA1P42261 906 aa12.64□□□□□ -0.39
RTN3-212ENST00000543123 ARSFP54793 590 aa12.64□□□□□ -0.39
RTN3-212ENST00000543123 BASP1P80723 227 aaKnown RBP12.64□□□□□ -0.39
RTN3-212ENST00000543123 ATP1A4Q13733 1029 aa12.64□□□□□ -0.39
RTN3-212ENST00000543123 SSPNQ14714 243 aa12.64□□□□□ -0.39
RTN3-212ENST00000543123 ZIC1Q15915 447 aa12.64□□□□□ -0.39
RTN3-212ENST00000543123 KYNUQ16719 465 aa12.64□□□□□ -0.39
RTN3-212ENST00000543123 NKAIN1Q4KMZ8 207 aa12.64□□□□□ -0.39
RTN3-212ENST00000543123 ZC3H12BQ5HYM0 836 aaKnown RBP12.64□□□□□ -0.39
RTN3-212ENST00000543123 RNF187Q5TA31 235 aaPredicted RBP12.64□□□□□ -0.39
RTN3-212ENST00000543123 MEI1Q5TIA1 1274 aa12.64□□□□□ -0.39
RTN3-212ENST00000543123 VWA5B1Q5TIE3 1220 aa12.64□□□□□ -0.39
RTN3-212ENST00000543123 C1orf189Q5VU69 101 aa12.64□□□□□ -0.39
RTN3-212ENST00000543123 YOD1Q5VVQ6 348 aaPredicted RBP12.64□□□□□ -0.39
RTN3-212ENST00000543123 CLEC18BQ6UXF7 455 aa12.64□□□□□ -0.39
RTN3-212ENST00000543123 NAPRTQ6XQN6 538 aa12.64□□□□□ -0.39
RTN3-212ENST00000543123 MICALCLQ6ZW33 695 aa12.64□□□□□ -0.39
RTN3-212ENST00000543123 ZNF534Q76KX8 674 aa12.64□□□□□ -0.39
RTN3-212ENST00000543123 MRGPREQ86SM8 312 aa12.64□□□□□ -0.39
RTN3-212ENST00000543123 GAS2L3Q86XJ1 694 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms