RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 DPY19L1Q2PZI1 675 aa13.82□□□□□ -0.2
USP3-204ENST00000540797 NAIF1Q69YI7 327 aaPredicted RBP13.82□□□□□ -0.2
USP3-204ENST00000540797 UMODL1-AS1Q8N2C9 162 aa13.82□□□□□ -0.2
USP3-204ENST00000540797 AGAP11Q8TF27 550 aa13.82□□□□□ -0.2
USP3-204ENST00000540797 CRYGNQ8WXF5 182 aa13.82□□□□□ -0.2
USP3-204ENST00000540797 SLC38A4Q969I6 547 aa13.82□□□□□ -0.2
USP3-204ENST00000540797 TLCD1Q96CP7 247 aa13.82□□□□□ -0.2
USP3-204ENST00000540797 CMTM7Q96FZ5 175 aa13.82□□□□□ -0.2
USP3-204ENST00000540797 KCNN2Q9H2S1 579 aa13.82□□□□□ -0.2
USP3-204ENST00000540797 PDLIM7Q9NR12 457 aa13.82□□□□□ -0.2
USP3-204ENST00000540797 PDP1Q9P0J1 537 aaPredicted RBP13.82□□□□□ -0.2
USP3-204ENST00000540797 RAPGEFL1Q9UHV5 662 aa13.82□□□□□ -0.2
USP3-204ENST00000540797 ZBTB22O15209 634 aa13.81□□□□□ -0.2
USP3-204ENST00000540797 DNAJA2O60884 412 aa13.81□□□□□ -0.2
USP3-204ENST00000540797 CHRNGP07510 517 aa13.81□□□□□ -0.2
USP3-204ENST00000540797 PTDSS1P48651 473 aaKnown RBP13.81□□□□□ -0.2
USP3-204ENST00000540797 RPL6Q02878 288 aaKnown RBP13.81□□□□□ -0.2
USP3-204ENST00000540797 GJD3Q8N144 294 aa13.81□□□□□ -0.2
USP3-204ENST00000540797 HM13Q8TCT9 377 aa13.81□□□□□ -0.2
USP3-204ENST00000540797 KBTBD7Q8WVZ9 684 aa13.81□□□□□ -0.2
USP3-204ENST00000540797 SLC2A11Q9BYW1 496 aa13.81□□□□□ -0.2
USP3-204ENST00000540797 HAPLN2Q9GZV7 340 aa13.81□□□□□ -0.2
USP3-204ENST00000540797 ALG2Q9H553 416 aa13.81□□□□□ -0.2
USP3-204ENST00000540797 ZNF282Q9UDV7 671 aaPredicted RBP13.81□□□□□ -0.2
USP3-204ENST00000540797 A0A1W2PRB8 838 aa13.81□□□□□ -0.2
USP3-204ENST00000540797 LAMTOR5O43504 91 aa13.81□□□□□ -0.2
USP3-204ENST00000540797 CSNK2A2P19784 350 aaPredicted RBP13.81□□□□□ -0.2
USP3-204ENST00000540797 RPP38P78345 283 aaKnown RBP13.81□□□□□ -0.2
USP3-204ENST00000540797 TMEM115Q12893 351 aaPredicted RBP13.81□□□□□ -0.2
USP3-204ENST00000540797 EIF4HQ15056 248 aaKnown RBP13.81□□□□□ -0.2
USP3-204ENST00000540797 HKDC1Q2TB90 917 aa13.81□□□□□ -0.2
USP3-204ENST00000540797 RBM20Q5T481 1227 aaKnown RBP13.81□□□□□ -0.2
USP3-204ENST00000540797 FAM91A1Q658Y4 838 aa13.81□□□□□ -0.2
USP3-204ENST00000540797 TRIM74Q86UV6 250 aa13.81□□□□□ -0.2
USP3-204ENST00000540797 IZUMO1Q8IYV9 350 aa13.81□□□□□ -0.2
USP3-204ENST00000540797 ZCCHC7Q8N3Z6 543 aaKnown RBP13.81□□□□□ -0.2
USP3-204ENST00000540797 GLIS1Q8NBF1 620 aa13.81□□□□□ -0.2
USP3-204ENST00000540797 RBM15BQ8NDT2 890 aaKnown RBP13.81□□□□□ -0.2
USP3-204ENST00000540797 DCAKDQ8WVC6 231 aa13.81□□□□□ -0.2
USP3-204ENST00000540797 LPGAT1Q92604 370 aa13.81□□□□□ -0.2
USP3-204ENST00000540797 SPRTNQ9H040 489 aaPredicted RBP13.81□□□□□ -0.2
USP3-204ENST00000540797 OXSMQ9NWU1 459 aa13.81□□□□□ -0.2
USP3-204ENST00000540797 TNFRSF11BO00300 401 aa13.81□□□□□ -0.2
USP3-204ENST00000540797 CDC7O00311 574 aa13.81□□□□□ -0.2
USP3-204ENST00000540797 SCELO95171 688 aa13.81□□□□□ -0.2
USP3-204ENST00000540797 LATS1O95835 1130 aa13.81□□□□□ -0.2
USP3-204ENST00000540797 ACTR3P61158 418 aa13.81□□□□□ -0.2
USP3-204ENST00000540797 WDR5P61964 334 aaKnown RBP13.81□□□□□ -0.2
USP3-204ENST00000540797 MTX3Q5HYI7 312 aa13.81□□□□□ -0.2
USP3-204ENST00000540797 RPTNQ6XPR3 784 aa13.81□□□□□ -0.2
USP3-204ENST00000540797 SFRP1Q8N474 314 aa13.81□□□□□ -0.2
USP3-204ENST00000540797 OR10A6Q8NH74 314 aa13.81□□□□□ -0.2
USP3-204ENST00000540797 PIH1D2Q8WWB5 315 aa13.81□□□□□ -0.2
USP3-204ENST00000540797 FIZ1Q96SL8 496 aa13.81□□□□□ -0.2
USP3-204ENST00000540797 C8orf33Q9H7E9 229 aaPredicted RBP13.81□□□□□ -0.2
USP3-204ENST00000540797 SAGE1Q9NXZ1 904 aa13.81□□□□□ -0.2
USP3-204ENST00000540797 A8MT66 165 aa13.81□□□□□ -0.2
USP3-204ENST00000540797 A8MUA0 341 aa13.81□□□□□ -0.2
USP3-204ENST00000540797 CTSKP43235 329 aa13.81□□□□□ -0.2
USP3-204ENST00000540797 CHN2P52757 468 aa13.81□□□□□ -0.2
USP3-204ENST00000540797 ATP12AP54707 1039 aa13.81□□□□□ -0.2
USP3-204ENST00000540797 PTPRCAPQ14761 206 aa13.81□□□□□ -0.2
USP3-204ENST00000540797 SPANXN2Q5MJ10 180 aa13.81□□□□□ -0.2
USP3-204ENST00000540797 DCST1Q5T197 706 aa13.81□□□□□ -0.2
USP3-204ENST00000540797 FRG2Q64ET8 278 aa13.81□□□□□ -0.2
USP3-204ENST00000540797 NXPE1Q8N323 547 aa13.81□□□□□ -0.2
USP3-204ENST00000540797 PSKH2Q96QS6 385 aa13.81□□□□□ -0.2
USP3-204ENST00000540797 FRG2BQ96QU4 278 aa13.81□□□□□ -0.2
USP3-204ENST00000540797 NUAK2Q9H093 628 aa13.81□□□□□ -0.2
USP3-204ENST00000540797 M0QZQ0 153 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 KLK3P07288 261 aaPredicted RBP13.8□□□□□ -0.2
USP3-204ENST00000540797 PIM1P11309 404 aaPredicted RBP13.8□□□□□ -0.2
USP3-204ENST00000540797 IL7RP16871 459 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 PRDX6P30041 224 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 BTN3A2P78410 334 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 HMGCS1Q01581 520 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 SEMA3AQ14563 771 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 PIK3R6Q5UE93 754 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 C11orf88Q6PI97 169 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 C15orf39Q6ZRI6 1047 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 ZNF572Q7Z3I7 529 aaPredicted RBP13.8□□□□□ -0.2
USP3-204ENST00000540797 HIPK1Q86Z02 1210 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 CILP2Q8IUL8 1156 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 WDTC1Q8N5D0 677 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 KIFC1Q9BW19 673 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 OSBPL11Q9BXB4 747 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 KLHL25Q9H0H3 589 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 GSC2O15499 205 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 AP2A2O94973 939 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 OAS1P00973 400 aaKnown RBP13.8□□□□□ -0.2
USP3-204ENST00000540797 HNF1BP35680 557 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 RANBP1P43487 201 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 NRG3P56975 720 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 ERVK-8P63133 956 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 MLIPQ5VWP3 458 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 DCUN1D3Q8IWE4 304 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 ROPN1LQ96C74 230 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 MRM3Q9HC36 420 aaKnown RBP13.8□□□□□ -0.2
USP3-204ENST00000540797 CDH22Q9UJ99 828 aa13.8□□□□□ -0.2
USP3-204ENST00000540797 PIAS3Q9Y6X2 628 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms