RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 EGFP01133 1207 aa3.34□□□□□ -1.87
USP48-215ENST00000534705 APOA4P06727 396 aa3.34□□□□□ -1.87
USP48-215ENST00000534705 CHMLP26374 656 aa3.34□□□□□ -1.87
USP48-215ENST00000534705 CORO1AP31146 461 aaKnown RBP3.34□□□□□ -1.87
USP48-215ENST00000534705 NF2P35240 595 aa3.34□□□□□ -1.87
USP48-215ENST00000534705 CLK1P49759 484 aaKnown RBP3.34□□□□□ -1.87
USP48-215ENST00000534705 CCR9P51686 369 aa3.34□□□□□ -1.87
USP48-215ENST00000534705 DYNLL1P63167 89 aaKnown RBP3.34□□□□□ -1.87
USP48-215ENST00000534705 TCP10Q12799 353 aa3.34□□□□□ -1.87
USP48-215ENST00000534705 GAGE5Q13069 117 aa3.34□□□□□ -1.87
USP48-215ENST00000534705 GAGE6Q13070 117 aa3.34□□□□□ -1.87
USP48-215ENST00000534705 CUL4AQ13619 759 aa3.34□□□□□ -1.87
USP48-215ENST00000534705 VGLL4Q14135 290 aa3.34□□□□□ -1.87
USP48-215ENST00000534705 MRGPRG-AS1Q2M3A8 158 aa3.34□□□□□ -1.87
USP48-215ENST00000534705 KRTAP24-1Q3LI83 254 aa3.34□□□□□ -1.87
USP48-215ENST00000534705 CDONQ4KMG0 1287 aa3.34□□□□□ -1.87
USP48-215ENST00000534705 CCDC158Q5M9N0 1113 aa3.34□□□□□ -1.87
USP48-215ENST00000534705 HECTD3Q5T447 861 aa3.34□□□□□ -1.87
USP48-215ENST00000534705 FAM205BPQ63HN1 556 aa3.34□□□□□ -1.87
USP48-215ENST00000534705 SLC30A6Q6NXT4 461 aa3.34□□□□□ -1.87
USP48-215ENST00000534705 GDPD4Q6W3E5 623 aa3.34□□□□□ -1.87
USP48-215ENST00000534705 ZNF704Q6ZNC4 412 aaPredicted RBP3.34□□□□□ -1.87
USP48-215ENST00000534705 NFE4Q86UQ8 179 aa3.34□□□□□ -1.87
USP48-215ENST00000534705 AACSQ86V21 672 aa3.34□□□□□ -1.87
USP48-215ENST00000534705 DZIP1Q86YF9 867 aaKnown RBP3.34□□□□□ -1.87
USP48-215ENST00000534705 ODF3L1Q8IXM7 274 aa3.34□□□□□ -1.87
USP48-215ENST00000534705 HACE1Q8IYU2 909 aa3.34□□□□□ -1.87
USP48-215ENST00000534705 BEST3Q8N1M1 668 aa3.34□□□□□ -1.87
USP48-215ENST00000534705 SPEM1Q8N4L4 309 aa3.34□□□□□ -1.87
USP48-215ENST00000534705 METTL27Q8N6F8 245 aaPredicted RBP3.34□□□□□ -1.87
USP48-215ENST00000534705 GOLGA6L2Q8N9W4 650 aaPredicted RBP3.34□□□□□ -1.87
USP48-215ENST00000534705 FAM184AQ8NB25 1140 aa3.34□□□□□ -1.87
USP48-215ENST00000534705 ANKRD52Q8NB46 1076 aa3.34□□□□□ -1.87
USP48-215ENST00000534705 TMEM116Q8NCL8 245 aa3.34□□□□□ -1.87
USP48-215ENST00000534705 ZNF397Q8NF99 534 aaPredicted RBP3.34□□□□□ -1.87
USP48-215ENST00000534705 DUSP19Q8WTR2 217 aa3.34□□□□□ -1.87
USP48-215ENST00000534705 SLC20A1Q8WUM9 679 aa3.34□□□□□ -1.87
USP48-215ENST00000534705 RSPH1Q8WYR4 309 aa3.34□□□□□ -1.87
USP48-215ENST00000534705 ZKSCAN4Q969J2 545 aaPredicted RBP3.34□□□□□ -1.87
USP48-215ENST00000534705 PIGTQ969N2 578 aa3.34□□□□□ -1.87
USP48-215ENST00000534705 IGSF8Q969P0 613 aa3.34□□□□□ -1.87
USP48-215ENST00000534705 ORAI1Q96D31 301 aa3.34□□□□□ -1.87
USP48-215ENST00000534705 GRAMD2BQ96HH9 432 aa3.34□□□□□ -1.87
USP48-215ENST00000534705 MTERF1Q99551 399 aaKnown RBP3.34□□□□□ -1.87
USP48-215ENST00000534705 SEPT5Q99719 369 aaPredicted RBP3.34□□□□□ -1.87
USP48-215ENST00000534705 RIOK1Q9BRS2 568 aaKnown RBP3.34□□□□□ -1.87
USP48-215ENST00000534705 LRRC1Q9BTT6 524 aa3.34□□□□□ -1.87
USP48-215ENST00000534705 KRTAP4-3Q9BYR4 195 aa3.34□□□□□ -1.87
USP48-215ENST00000534705 PCDHB16Q9NRJ7 776 aa3.34□□□□□ -1.87
USP48-215ENST00000534705 HAUS2Q9NVX0 235 aa3.34□□□□□ -1.87
USP48-215ENST00000534705 FRMD4AQ9P2Q2 1039 aaPredicted RBP3.34□□□□□ -1.87
USP48-215ENST00000534705 VPS28Q9UK41 221 aa3.34□□□□□ -1.87
USP48-215ENST00000534705 KCNS2Q9ULS6 477 aa3.34□□□□□ -1.87
USP48-215ENST00000534705 ADAM18Q9Y3Q7 739 aa3.34□□□□□ -1.87
USP48-215ENST00000534705 JRKLQ9Y4A0 524 aa3.34□□□□□ -1.87
USP48-215ENST00000534705 OBSCNQ5VST9 7968 aa3.34□□□□□ -1.88
USP48-215ENST00000534705 CEP290O15078 2479 aa3.33□□□□□ -1.88
USP48-215ENST00000534705 LTBP2Q14767 1821 aa3.33□□□□□ -1.88
USP48-215ENST00000534705 KANSL1LA0AUZ9 987 aa3.33□□□□□ -1.88
USP48-215ENST00000534705 P2RY10O00398 339 aa3.33□□□□□ -1.88
USP48-215ENST00000534705 P4HA2O15460 535 aa3.33□□□□□ -1.88
USP48-215ENST00000534705 AHCYL1O43865 530 aa3.33□□□□□ -1.88
USP48-215ENST00000534705 USO1O60763 962 aaKnown RBP3.33□□□□□ -1.88
USP48-215ENST00000534705 JRKO75564 520 aa3.33□□□□□ -1.88
USP48-215ENST00000534705 SLC25A12O75746 678 aa3.33□□□□□ -1.88
USP48-215ENST00000534705 SCGB1D1O95968 90 aa3.33□□□□□ -1.88
USP48-215ENST00000534705 DNTTP04053 509 aa3.33□□□□□ -1.88
USP48-215ENST00000534705 TPM3P06753 285 aa3.33□□□□□ -1.88
USP48-215ENST00000534705 CETPP11597 493 aa3.33□□□□□ -1.88
USP48-215ENST00000534705 NEFHP12036 1026 aa3.33□□□□□ -1.88
USP48-215ENST00000534705 AKR1B1P15121 316 aa3.33□□□□□ -1.88
USP48-215ENST00000534705 MYOD1P15172 320 aa3.33□□□□□ -1.88
USP48-215ENST00000534705 ITGA2P17301 1181 aa3.33□□□□□ -1.88
USP48-215ENST00000534705 GNL1P36915 607 aaPredicted RBP3.33□□□□□ -1.88
USP48-215ENST00000534705 MAGEA9P43362 315 aa3.33□□□□□ -1.88
USP48-215ENST00000534705 HOXA1P49639 335 aaPredicted RBP3.33□□□□□ -1.88
USP48-215ENST00000534705 F2RL1P55085 397 aa3.33□□□□□ -1.88
USP48-215ENST00000534705 MRPS34P82930 218 aaKnown RBP3.33□□□□□ -1.88
USP48-215ENST00000534705 PDE1BQ01064 536 aa3.33□□□□□ -1.88
USP48-215ENST00000534705 GOLGA8DPQ0D2H9 430 aa3.33□□□□□ -1.88
USP48-215ENST00000534705 TMEM115Q12893 351 aaPredicted RBP3.33□□□□□ -1.88
USP48-215ENST00000534705 MAD2L1Q13257 205 aaPredicted RBP3.33□□□□□ -1.88
USP48-215ENST00000534705 PPIL2Q13356 520 aa3.33□□□□□ -1.88
USP48-215ENST00000534705 SMC1AQ14683 1233 aaKnown RBP3.33□□□□□ -1.88
USP48-215ENST00000534705 TSTQ16762 297 aaKnown RBP3.33□□□□□ -1.88
USP48-215ENST00000534705 SHROOM1Q2M3G4 852 aaPredicted RBP3.33□□□□□ -1.88
USP48-215ENST00000534705 TTC31Q49AM3 519 aaPredicted RBP3.33□□□□□ -1.88
USP48-215ENST00000534705 RILPL1Q5EBL4 403 aa3.33□□□□□ -1.88
USP48-215ENST00000534705 HAUS3Q68CZ6 603 aa3.33□□□□□ -1.88
USP48-215ENST00000534705 LCN10Q6JVE6 187 aa3.33□□□□□ -1.88
USP48-215ENST00000534705 NAA16Q6N069 864 aaPredicted RBP3.33□□□□□ -1.88
USP48-215ENST00000534705 PAPD4Q6PIY7 484 aaKnown RBP3.33□□□□□ -1.88
USP48-215ENST00000534705 MEX3BQ6ZN04 569 aaKnown RBP3.33□□□□□ -1.88
USP48-215ENST00000534705 SEPT14Q6ZU15 432 aa3.33□□□□□ -1.88
USP48-215ENST00000534705 ASB18Q6ZVZ8 466 aa3.33□□□□□ -1.88
USP48-215ENST00000534705 TMTC3Q6ZXV5 915 aa3.33□□□□□ -1.88
USP48-215ENST00000534705 GPR180Q86V85 440 aa3.33□□□□□ -1.88
USP48-215ENST00000534705 RNF168Q8IYW5 571 aaPredicted RBP3.33□□□□□ -1.88
USP48-215ENST00000534705 IL17RCQ8NAC3 791 aa3.33□□□□□ -1.88
USP48-215ENST00000534705 APBB2Q92870 758 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms