RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 APOA4P06727 396 aa14.22□□□□□ -0.13
VPS28-215ENST00000531924 CAPN1P07384 714 aa14.22□□□□□ -0.13
VPS28-215ENST00000531924 GP1BBP13224 206 aa14.22□□□□□ -0.13
VPS28-215ENST00000531924 PSMA3P25788 255 aa14.22□□□□□ -0.13
VPS28-215ENST00000531924 FOLR3P41439 243 aa14.22□□□□□ -0.13
VPS28-215ENST00000531924 DCDP81605 110 aaKnown RBP14.22□□□□□ -0.13
VPS28-215ENST00000531924 SNX1Q13596 522 aa14.22□□□□□ -0.13
VPS28-215ENST00000531924 TMED2Q15363 201 aa14.22□□□□□ -0.13
VPS28-215ENST00000531924 FHL5Q5TD97 284 aa14.22□□□□□ -0.13
VPS28-215ENST00000531924 PAPD7Q5XG87 772 aaKnown RBP14.22□□□□□ -0.13
VPS28-215ENST00000531924 TTC23LQ6PF05 361 aa14.22□□□□□ -0.13
VPS28-215ENST00000531924 ZBTB2Q8N680 514 aa14.22□□□□□ -0.13
VPS28-215ENST00000531924 ZNF655Q8N720 491 aaPredicted RBP14.22□□□□□ -0.13
VPS28-215ENST00000531924 SPC24Q8NBT2 197 aa14.22□□□□□ -0.13
VPS28-215ENST00000531924 CLEC1AQ8NC01 280 aa14.22□□□□□ -0.13
VPS28-215ENST00000531924 FER1L6-AS2Q96M78 137 aa14.22□□□□□ -0.13
VPS28-215ENST00000531924 RANBP9Q96S59 729 aa14.22□□□□□ -0.13
VPS28-215ENST00000531924 AP1M1Q9BXS5 423 aa14.22□□□□□ -0.13
VPS28-215ENST00000531924 TSGA10Q9BZW7 698 aa14.22□□□□□ -0.13
VPS28-215ENST00000531924 CHRNA10Q9GZZ6 450 aa14.22□□□□□ -0.13
VPS28-215ENST00000531924 SLC2A6Q9UGQ3 507 aa14.22□□□□□ -0.13
VPS28-215ENST00000531924 PLCL2Q9UPR0 1127 aa14.22□□□□□ -0.13
VPS28-215ENST00000531924 LRRK2Q5S007 2527 aa14.22□□□□□ -0.13
VPS28-215ENST00000531924 KLHL41O60662 606 aa14.21□□□□□ -0.13
VPS28-215ENST00000531924 CEACAM4O75871 244 aa14.21□□□□□ -0.13
VPS28-215ENST00000531924 SUN1O94901 812 aa14.21□□□□□ -0.13
VPS28-215ENST00000531924 APRTP07741 180 aa14.21□□□□□ -0.13
VPS28-215ENST00000531924 CBSLP0DN79 551 aa14.21□□□□□ -0.13
VPS28-215ENST00000531924 ALAS2P22557 587 aa14.21□□□□□ -0.13
VPS28-215ENST00000531924 GNLYP22749 145 aa14.21□□□□□ -0.13
VPS28-215ENST00000531924 VARSP26640 1264 aaKnown RBP14.21□□□□□ -0.13
VPS28-215ENST00000531924 CBSP35520 551 aa14.21□□□□□ -0.13
VPS28-215ENST00000531924 RAB28P51157 221 aa14.21□□□□□ -0.13
VPS28-215ENST00000531924 RAPSNQ13702 412 aa14.21□□□□□ -0.13
VPS28-215ENST00000531924 SSPNQ14714 243 aa14.21□□□□□ -0.13
VPS28-215ENST00000531924 SLC5A12Q1EHB4 618 aa14.21□□□□□ -0.13
VPS28-215ENST00000531924 PTRHD1Q6GMV3 140 aaKnown RBP14.21□□□□□ -0.13
VPS28-215ENST00000531924 RHBDD2Q6NTF9 364 aa14.21□□□□□ -0.13
VPS28-215ENST00000531924 JMJD6Q6NYC1 403 aaPredicted RBP14.21□□□□□ -0.13
VPS28-215ENST00000531924 GLIS1Q8NBF1 620 aa14.21□□□□□ -0.13
VPS28-215ENST00000531924 OR13J1Q8NGT2 312 aa14.21□□□□□ -0.13
VPS28-215ENST00000531924 DENND1AQ8TEH3 1009 aa14.21□□□□□ -0.13
VPS28-215ENST00000531924 SKA2Q8WVK7 121 aaPredicted RBP14.21□□□□□ -0.13
VPS28-215ENST00000531924 UBE2Q2Q8WVN8 375 aa14.21□□□□□ -0.13
VPS28-215ENST00000531924 C1orf54Q8WWF1 131 aa14.21□□□□□ -0.13
VPS28-215ENST00000531924 SLC22A18Q96BI1 424 aa14.21□□□□□ -0.13
VPS28-215ENST00000531924 SLC29A3Q9BZD2 475 aa14.21□□□□□ -0.13
VPS28-215ENST00000531924 INTS7Q9NVH2 962 aaKnown RBP14.21□□□□□ -0.13
VPS28-215ENST00000531924 LUZP4Q9P127 313 aa14.21□□□□□ -0.13
VPS28-215ENST00000531924 SLC39A10Q9ULF5 831 aa14.21□□□□□ -0.13
VPS28-215ENST00000531924 RIMKLBQ9ULI2 386 aa14.21□□□□□ -0.13
VPS28-215ENST00000531924 CAPN6Q9Y6Q1 641 aa14.21□□□□□ -0.13
VPS28-215ENST00000531924 BLACEA4D250 179 aa14.2□□□□□ -0.14
VPS28-215ENST00000531924 CLEC18AA5D8T8 446 aa14.2□□□□□ -0.14
VPS28-215ENST00000531924 CCR7P32248 378 aa14.2□□□□□ -0.14
VPS28-215ENST00000531924 TTPAP49638 278 aa14.2□□□□□ -0.14
VPS28-215ENST00000531924 SLC9A5Q14940 896 aa14.2□□□□□ -0.14
VPS28-215ENST00000531924 OASLQ15646 514 aaKnown RBP14.2□□□□□ -0.14
VPS28-215ENST00000531924 ZIC1Q15915 447 aa14.2□□□□□ -0.14
VPS28-215ENST00000531924 CYP2A13Q16696 494 aa14.2□□□□□ -0.14
VPS28-215ENST00000531924 NKAIN1Q4KMZ8 207 aa14.2□□□□□ -0.14
VPS28-215ENST00000531924 CLEC18BQ6UXF7 455 aa14.2□□□□□ -0.14
VPS28-215ENST00000531924 MRGPREQ86SM8 312 aa14.2□□□□□ -0.14
VPS28-215ENST00000531924 SLC13A5Q86YT5 568 aaPredicted RBP14.2□□□□□ -0.14
VPS28-215ENST00000531924 DCUN1D3Q8IWE4 304 aa14.2□□□□□ -0.14
VPS28-215ENST00000531924 SLC22A15Q8IZD6 547 aa14.2□□□□□ -0.14
VPS28-215ENST00000531924 RAB42Q8N4Z0 105 aa14.2□□□□□ -0.14
VPS28-215ENST00000531924 C2orf73Q8N5S3 287 aaPredicted RBP14.2□□□□□ -0.14
VPS28-215ENST00000531924 OTUD6BQ8N6M0 293 aa14.2□□□□□ -0.14
VPS28-215ENST00000531924 CLEC18CQ8NCF0 446 aa14.2□□□□□ -0.14
VPS28-215ENST00000531924 DLG3Q92796 817 aa14.2□□□□□ -0.14
VPS28-215ENST00000531924 PTERQ96BW5 349 aa14.2□□□□□ -0.14
VPS28-215ENST00000531924 NUDT9Q9BW91 350 aa14.2□□□□□ -0.14
VPS28-215ENST00000531924 CARD6Q9BX69 1037 aa14.2□□□□□ -0.14
VPS28-215ENST00000531924 CATSPERZQ9NTU4 200 aa14.2□□□□□ -0.14
VPS28-215ENST00000531924 PAK5Q9P286 719 aa14.2□□□□□ -0.14
VPS28-215ENST00000531924 DHCR7Q9UBM7 475 aaKnown RBP14.2□□□□□ -0.14
VPS28-215ENST00000531924 GUCA1BQ9UMX6 200 aa14.2□□□□□ -0.14
VPS28-215ENST00000531924 CDYLQ9Y232 598 aa14.2□□□□□ -0.14
VPS28-215ENST00000531924 TCAF1Q9Y4C2 921 aa14.2□□□□□ -0.14
VPS28-215ENST00000531924 MAP4K5Q9Y4K4 846 aa14.2□□□□□ -0.14
VPS28-215ENST00000531924 A0A0U1RQJ8 604 aa14.19□□□□□ -0.14
VPS28-215ENST00000531924 KRT86O43790 486 aa14.19□□□□□ -0.14
VPS28-215ENST00000531924 KLF7O75840 302 aaPredicted RBP14.19□□□□□ -0.14
VPS28-215ENST00000531924 PIM1P11309 404 aaPredicted RBP14.19□□□□□ -0.14
VPS28-215ENST00000531924 ETS1P14921 441 aa14.19□□□□□ -0.14
VPS28-215ENST00000531924 GRIA1P42261 906 aa14.19□□□□□ -0.14
VPS28-215ENST00000531924 UQCRFS1P47985 274 aa14.19□□□□□ -0.14
VPS28-215ENST00000531924 SESN2P58004 480 aaPredicted RBP14.19□□□□□ -0.14
VPS28-215ENST00000531924 RPS6KA1Q15418 735 aa14.19□□□□□ -0.14
VPS28-215ENST00000531924 SF1Q15637 639 aaKnown RBP14.19□□□□□ -0.14
VPS28-215ENST00000531924 INPP5JQ15735 1006 aaPredicted RBP14.19□□□□□ -0.14
VPS28-215ENST00000531924 VWA5B1Q5TIE3 1220 aa14.19□□□□□ -0.14
VPS28-215ENST00000531924 ZNF385CQ66K41 422 aaPredicted RBP14.19□□□□□ -0.14
VPS28-215ENST00000531924 UNC5DQ6UXZ4 953 aa14.19□□□□□ -0.14
VPS28-215ENST00000531924 GSTA5Q7RTV2 222 aa14.19□□□□□ -0.14
VPS28-215ENST00000531924 TAX1BP1Q86VP1 789 aa14.19□□□□□ -0.14
VPS28-215ENST00000531924 TMEM139Q8IV31 216 aa14.19□□□□□ -0.14
VPS28-215ENST00000531924 MCATQ8IVS2 390 aaKnown RBP14.19□□□□□ -0.14
VPS28-215ENST00000531924 DNAJC22Q8N4W6 341 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms