RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 RBP1P09455 135 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 SLC35E2BP0CK96 405 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 CCDC166P0CW27 439 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 ENO3P13929 434 aaPredicted RBP7.24□□□□□ -1.25
CD44-228ENST00000528455 BRAFP15056 766 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 RAB6AP20340 208 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 SAT1P21673 171 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 CCR7P32248 378 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 DHPSP49366 369 aaPredicted RBP7.24□□□□□ -1.25
CD44-228ENST00000528455 RGS4P49798 205 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 CTSCP53634 463 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 SRP54P61011 504 aaKnown RBP7.24□□□□□ -1.25
CD44-228ENST00000528455 MAGOHP61326 146 aaKnown RBP7.24□□□□□ -1.25
CD44-228ENST00000528455 ATP6V0D1P61421 351 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 PPARDQ03181 441 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 DMPKQ09013 629 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 BMPR2Q13873 1038 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 LRP8Q14114 963 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 GBX1Q14549 363 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 ACAP2Q15057 778 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 SF3A2Q15428 464 aaKnown RBP7.24□□□□□ -1.25
CD44-228ENST00000528455 CCDC6Q16204 474 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 ZNF658BQ4V348 819 aaPredicted RBP7.24□□□□□ -1.25
CD44-228ENST00000528455 ZBTB37Q5TC79 503 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 AGAP9Q5VTM2 703 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 LYSMD4Q5XG99 296 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 PAQR3Q6TCH7 311 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 TMEM207Q6UWW9 146 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 DET1Q7L5Y6 550 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 RABEPKQ7Z6M1 372 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 TBC1D1Q86TI0 1168 aaPredicted RBP7.24□□□□□ -1.25
CD44-228ENST00000528455 SYT12Q8IV01 421 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 SRRM1Q8IYB3 904 aaKnown RBP7.24□□□□□ -1.25
CD44-228ENST00000528455 CFAP206Q8IYR0 622 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 KRT222Q8N1A0 295 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 OXR1Q8N573 874 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 FBXO27Q8NI29 283 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 CEP76Q8TAP6 659 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 EEF1AKMT1Q8WVE0 214 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 SNX19Q92543 992 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 ATXN7L3BQ96GX2 97 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 GPR21Q99679 349 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 TIMM29Q9BSF4 260 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 SLC13A1Q9BZW2 595 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 DERL2Q9GZP9 239 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 SEMA6CQ9H3T2 930 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 DPEP2Q9H4A9 486 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 TFB2MQ9H5Q4 396 aaKnown RBP7.24□□□□□ -1.25
CD44-228ENST00000528455 CAB39LQ9H9S4 337 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 NMRAL1Q9HBL8 299 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 MKS1Q9NXB0 559 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 GALPQ9UBC7 116 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 STOML1Q9UBI4 398 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 GULP1Q9UBP9 304 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 TRMT6Q9UJA5 497 aaKnown RBP7.24□□□□□ -1.25
CD44-228ENST00000528455 PLLPQ9Y342 182 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 TNRC6BQ9UPQ9 1833 aaKnown RBP7.24□□□□□ -1.25
CD44-228ENST00000528455 TDRD6O60522 2096 aaKnown RBP7.23□□□□□ -1.25
CD44-228ENST00000528455 ZFC3H1O60293 1989 aaKnown RBP7.23□□□□□ -1.25
CD44-228ENST00000528455 PRR19A6NJB7 356 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 GFYI3L273 518 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 COPEO14579 308 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 TM9SF1O15321 606 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 GLRA3O75311 464 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 RASGRP1O95267 797 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 MATN4O95460 622 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 CSF2P04141 144 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 WNT1P04628 370 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 FURINP09958 794 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 LTA4HP09960 611 aaKnown RBP7.23□□□□□ -1.25
CD44-228ENST00000528455 MPC1LP0DKB6 136 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 ZNF37AP17032 561 aaPredicted RBP7.23□□□□□ -1.25
CD44-228ENST00000528455 IDSP22304 550 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 CCNFP41002 786 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 ABCG1P45844 678 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 KPNA2P52292 529 aaKnown RBP7.23□□□□□ -1.25
CD44-228ENST00000528455 HK3P52790 923 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 LIMK1P53667 647 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 HSPA14Q0VDF9 509 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 FZD2Q14332 565 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 DUOXA1Q1HG43 343 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 CCDC153Q494R4 210 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 TAF1BQ53T94 588 aaPredicted RBP7.23□□□□□ -1.25
CD44-228ENST00000528455 TTMPQ5BVD1 217 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 CDKL4Q5MAI5 379 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 KCTD16Q68DU8 428 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 KLC3Q6P597 504 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 ABRAXAS1Q6UWZ7 409 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 WASH2PQ6VEQ5 465 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 CHST15Q7LFX5 561 aaPredicted RBP7.23□□□□□ -1.25
CD44-228ENST00000528455 MTERF4Q7Z6M4 381 aaKnown RBP7.23□□□□□ -1.25
CD44-228ENST00000528455 CMC1Q7Z7K0 106 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 CLEC14AQ86T13 490 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 ISCA2Q86U28 154 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 TRIM74Q86UV6 250 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 GALNT13Q8IUC8 556 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 TRAPPC5Q8IUR0 188 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 SLC22A18ASQ8N1D0 253 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 ZBTB2Q8N680 514 aa7.23□□□□□ -1.25
CD44-228ENST00000528455 ARFGAP2Q8N6H7 521 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms