RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 ARRDC1-AS1Q9H2J1 176 aa3.55□□□□□ -1.84
CD44-217ENST00000525348 RPAP3Q9H6T3 665 aaPredicted RBP3.55□□□□□ -1.84
CD44-217ENST00000525348 ATAD3AQ9NVI7 634 aa3.55□□□□□ -1.84
CD44-217ENST00000525348 CHMP5Q9NZZ3 219 aa3.55□□□□□ -1.84
CD44-217ENST00000525348 ZMAT5Q9UDW3 170 aaKnown RBP3.55□□□□□ -1.84
CD44-217ENST00000525348 RSPH14Q9UHP6 348 aa3.55□□□□□ -1.84
CD44-217ENST00000525348 HACL1Q9UJ83 578 aa3.55□□□□□ -1.84
CD44-217ENST00000525348 TARBP1Q13395 1621 aaKnown RBP3.55□□□□□ -1.84
CD44-217ENST00000525348 TOPBP1Q92547 1522 aa3.54□□□□□ -1.84
CD44-217ENST00000525348 SPAG9O60271 1321 aaKnown RBP3.54□□□□□ -1.84
CD44-217ENST00000525348 GIMAP1-GIMAP5A0A087WTJ2 511 aa3.54□□□□□ -1.84
CD44-217ENST00000525348 A0A1W2PRB8 838 aa3.54□□□□□ -1.84
CD44-217ENST00000525348 OR2A25A4D2G3 310 aa3.54□□□□□ -1.84
CD44-217ENST00000525348 LRRC72A6NJI9 287 aa3.54□□□□□ -1.84
CD44-217ENST00000525348 SSX4O60224 188 aa3.54□□□□□ -1.84
CD44-217ENST00000525348 FAM157CP0CG43 387 aa3.54□□□□□ -1.84
CD44-217ENST00000525348 PSMA3P25788 255 aa3.54□□□□□ -1.84
CD44-217ENST00000525348 SLC15A1P46059 708 aa3.54□□□□□ -1.84
CD44-217ENST00000525348 CTAG1AP78358 180 aa3.54□□□□□ -1.84
CD44-217ENST00000525348 SP3Q02447 781 aa3.54□□□□□ -1.84
CD44-217ENST00000525348 DMPKQ09013 629 aa3.54□□□□□ -1.84
CD44-217ENST00000525348 GPR17Q13304 367 aa3.54□□□□□ -1.84
CD44-217ENST00000525348 TMED1Q13445 227 aa3.54□□□□□ -1.84
CD44-217ENST00000525348 LPAL2Q16609 132 aa3.54□□□□□ -1.84
CD44-217ENST00000525348 DUSP28Q4G0W2 176 aa3.54□□□□□ -1.84
CD44-217ENST00000525348 FILIP1LQ4L180 1135 aa3.54□□□□□ -1.84
CD44-217ENST00000525348 CYP4A22Q5TCH4 519 aa3.54□□□□□ -1.84
CD44-217ENST00000525348 ZNF772Q68DY9 489 aaPredicted RBP3.54□□□□□ -1.84
CD44-217ENST00000525348 PWWP2BQ6NUJ5 590 aa3.54□□□□□ -1.84
CD44-217ENST00000525348 C16orf54Q6UWD8 224 aa3.54□□□□□ -1.84
CD44-217ENST00000525348 SZRD1Q7Z422 152 aa3.54□□□□□ -1.84
CD44-217ENST00000525348 ZNF554Q86TJ5 538 aa3.54□□□□□ -1.84
CD44-217ENST00000525348 LDB1Q86U70 411 aaPredicted RBP3.54□□□□□ -1.84
CD44-217ENST00000525348 FAM114A1Q8IWE2 563 aa3.54□□□□□ -1.84
CD44-217ENST00000525348 CEP57L1Q8IYX8 460 aa3.54□□□□□ -1.84
CD44-217ENST00000525348 DRAXINQ8NBI3 349 aaPredicted RBP3.54□□□□□ -1.84
CD44-217ENST00000525348 CCDC191Q8NCU4 936 aa3.54□□□□□ -1.84
CD44-217ENST00000525348 KBTBD8Q8NFY9 601 aa3.54□□□□□ -1.84
CD44-217ENST00000525348 OR2T11Q8NH01 316 aa3.54□□□□□ -1.84
CD44-217ENST00000525348 CCDC26Q8TAB7 109 aa3.54□□□□□ -1.84
CD44-217ENST00000525348 FGFBP3Q8TAT2 258 aa3.54□□□□□ -1.84
CD44-217ENST00000525348 RNF128Q8TEB7 428 aa3.54□□□□□ -1.84
CD44-217ENST00000525348 SYAP1Q96A49 352 aaPredicted RBP3.54□□□□□ -1.84
CD44-217ENST00000525348 GIMAP5Q96F15 307 aa3.54□□□□□ -1.84
CD44-217ENST00000525348 GMPPAQ96IJ6 420 aaPredicted RBP3.54□□□□□ -1.84
CD44-217ENST00000525348 OPRPNQ99935 248 aaPredicted RBP3.54□□□□□ -1.84
CD44-217ENST00000525348 DPAGT1Q9H3H5 408 aa3.54□□□□□ -1.84
CD44-217ENST00000525348 SMARCAD1Q9H4L7 1026 aa3.54□□□□□ -1.84
CD44-217ENST00000525348 CHMP1AQ9HD42 196 aaPredicted RBP3.54□□□□□ -1.84
CD44-217ENST00000525348 INTS9Q9NV88 658 aaKnown RBP3.54□□□□□ -1.84
CD44-217ENST00000525348 BARHL2Q9NY43 387 aa3.54□□□□□ -1.84
CD44-217ENST00000525348 FRMD4AQ9P2Q2 1039 aaPredicted RBP3.54□□□□□ -1.84
CD44-217ENST00000525348 SUCLA2Q9P2R7 463 aaPredicted RBP3.54□□□□□ -1.84
CD44-217ENST00000525348 TBK1Q9UHD2 729 aa3.54□□□□□ -1.84
CD44-217ENST00000525348 XPO7Q9UIA9 1087 aaKnown RBP3.54□□□□□ -1.84
CD44-217ENST00000525348 RIPK3Q9Y572 518 aa3.54□□□□□ -1.84
CD44-217ENST00000525348 RNF123Q5XPI4 1314 aa3.53□□□□□ -1.84
CD44-217ENST00000525348 FEZF1A0PJY2 475 aa3.53□□□□□ -1.84
CD44-217ENST00000525348 ERI2A8K979 691 aaKnown RBP3.53□□□□□ -1.84
CD44-217ENST00000525348 FAM25EA8MYX2 175 aa3.53□□□□□ -1.84
CD44-217ENST00000525348 PRR32B1ATL7 298 aa3.53□□□□□ -1.84
CD44-217ENST00000525348 ATP6V0E1O15342 81 aa3.53□□□□□ -1.84
CD44-217ENST00000525348 OR10H2O60403 315 aa3.53□□□□□ -1.84
CD44-217ENST00000525348 AP2A2O94973 939 aa3.53□□□□□ -1.84
CD44-217ENST00000525348 RAF1P04049 648 aa3.53□□□□□ -1.84
CD44-217ENST00000525348 RPN1P04843 607 aaKnown RBP3.53□□□□□ -1.84
CD44-217ENST00000525348 TSPY4P0CV99 314 aa3.53□□□□□ -1.84
CD44-217ENST00000525348 TSPY10P0CW01 314 aa3.53□□□□□ -1.84
CD44-217ENST00000525348 CHMLP26374 656 aa3.53□□□□□ -1.84
CD44-217ENST00000525348 ACSL1P33121 698 aa3.53□□□□□ -1.84
CD44-217ENST00000525348 ZNF131P52739 623 aa3.53□□□□□ -1.84
CD44-217ENST00000525348 PNLIPRP2P54317 469 aa3.53□□□□□ -1.84
CD44-217ENST00000525348 CBX1P83916 185 aa3.53□□□□□ -1.84
CD44-217ENST00000525348 PPARDQ03181 441 aa3.53□□□□□ -1.84
CD44-217ENST00000525348 SHROOM1Q2M3G4 852 aaPredicted RBP3.53□□□□□ -1.84
CD44-217ENST00000525348 PARP10Q53GL7 1025 aa3.53□□□□□ -1.84
CD44-217ENST00000525348 SLC10A5Q5PT55 438 aa3.53□□□□□ -1.84
CD44-217ENST00000525348 TTC19Q6DKK2 380 aaPredicted RBP3.53□□□□□ -1.84
CD44-217ENST00000525348 FIGLAQ6QHK4 219 aa3.53□□□□□ -1.84
CD44-217ENST00000525348 HAUS6Q7Z4H7 955 aa3.53□□□□□ -1.84
CD44-217ENST00000525348 CCDC91Q7Z6B0 441 aa3.53□□□□□ -1.84
CD44-217ENST00000525348 LCA5Q86VQ0 697 aa3.53□□□□□ -1.84
CD44-217ENST00000525348 MAPKAPK5-AS1Q8N8E1 139 aa3.53□□□□□ -1.84
CD44-217ENST00000525348 ARL10Q8N8L6 244 aa3.53□□□□□ -1.84
CD44-217ENST00000525348 CCDC89Q8N998 374 aa3.53□□□□□ -1.84
CD44-217ENST00000525348 TRIML1Q8N9V2 468 aa3.53□□□□□ -1.84
CD44-217ENST00000525348 SKA1Q96BD8 255 aa3.53□□□□□ -1.84
CD44-217ENST00000525348 MTERF3Q96E29 417 aa3.53□□□□□ -1.84
CD44-217ENST00000525348 FAM120BQ96EK7 910 aaKnown RBP3.53□□□□□ -1.84
CD44-217ENST00000525348 SAT2Q96F10 170 aaPredicted RBP3.53□□□□□ -1.84
CD44-217ENST00000525348 THOC1Q96FV9 657 aaKnown RBP3.53□□□□□ -1.84
CD44-217ENST00000525348 CCDC34Q96HJ3 373 aa3.53□□□□□ -1.84
CD44-217ENST00000525348 POM121L2Q96KW2 1035 aa3.53□□□□□ -1.84
CD44-217ENST00000525348 ATOH8Q96SQ7 321 aa3.53□□□□□ -1.84
CD44-217ENST00000525348 IWS1Q96ST2 819 aa3.53□□□□□ -1.84
CD44-217ENST00000525348 PAFAH2Q99487 392 aa3.53□□□□□ -1.84
CD44-217ENST00000525348 BAG1Q99933 345 aaPredicted RBP3.53□□□□□ -1.84
CD44-217ENST00000525348 CDK19Q9BWU1 502 aa3.53□□□□□ -1.84
CD44-217ENST00000525348 TRIM6Q9C030 488 aaPredicted RBP3.53□□□□□ -1.84
CD44-217ENST00000525348 LAT2Q9GZY6 243 aa3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms