RNA–Protein interactions for RNA: ENST00000515420.1

CLCN3-210, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 3

Gene CLCN3, Length 735 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-210ENST00000515420 PCDHGA4Q9Y5G9 962 aa12.37□□□□□ -0.43
CLCN3-210ENST00000515420 CACNA1GO43497 2377 aa12.37□□□□□ -0.43
CLCN3-210ENST00000515420 ATMQ13315 3056 aa12.36□□□□□ -0.43
CLCN3-210ENST00000515420 A0A0J9YY10 115 aa12.36□□□□□ -0.43
CLCN3-210ENST00000515420 SLC9B1P1A6NJY1 282 aa12.36□□□□□ -0.43
CLCN3-210ENST00000515420 E7ESA3 106 aa12.36□□□□□ -0.43
CLCN3-210ENST00000515420 EIF3FO00303 357 aaPredicted RBP12.36□□□□□ -0.43
CLCN3-210ENST00000515420 RASGRF2O14827 1237 aa12.36□□□□□ -0.43
CLCN3-210ENST00000515420 ATXN7O15265 892 aaPredicted RBP12.36□□□□□ -0.43
CLCN3-210ENST00000515420 TP73O15350 636 aa12.36□□□□□ -0.43
CLCN3-210ENST00000515420 ITGB2P05107 769 aa12.36□□□□□ -0.43
CLCN3-210ENST00000515420 ENO3P13929 434 aaPredicted RBP12.36□□□□□ -0.43
CLCN3-210ENST00000515420 UGT2B7P16662 529 aa12.36□□□□□ -0.43
CLCN3-210ENST00000515420 CHRM3P20309 590 aa12.36□□□□□ -0.43
CLCN3-210ENST00000515420 CLCN7P51798 805 aa12.36□□□□□ -0.43
CLCN3-210ENST00000515420 ITGA8P53708 1063 aa12.36□□□□□ -0.43
CLCN3-210ENST00000515420 ABRQ12979 859 aa12.36□□□□□ -0.43
CLCN3-210ENST00000515420 CTBP1Q13363 440 aa12.36□□□□□ -0.43
CLCN3-210ENST00000515420 GRB7Q14451 532 aa12.36□□□□□ -0.43
CLCN3-210ENST00000515420 KCNAB1Q14722 419 aa12.36□□□□□ -0.43
CLCN3-210ENST00000515420 BBS9Q3SYG4 887 aa12.36□□□□□ -0.43
CLCN3-210ENST00000515420 MSS51Q4VC12 460 aa12.36□□□□□ -0.43
CLCN3-210ENST00000515420 CRTC2Q53ET0 693 aaPredicted RBP12.36□□□□□ -0.43
CLCN3-210ENST00000515420 HSP90AA5PQ58FG0 334 aa12.36□□□□□ -0.43
CLCN3-210ENST00000515420 ZNF789Q5FWF6 425 aa12.36□□□□□ -0.43
CLCN3-210ENST00000515420 STEAP4Q687X5 459 aa12.36□□□□□ -0.43
CLCN3-210ENST00000515420 C6orf15Q6UXA7 325 aaPredicted RBP12.36□□□□□ -0.43
CLCN3-210ENST00000515420 SYT10Q6XYQ8 523 aa12.36□□□□□ -0.43
CLCN3-210ENST00000515420 TIPARPQ7Z3E1 657 aaKnown RBP12.36□□□□□ -0.43
CLCN3-210ENST00000515420 ZNF572Q7Z3I7 529 aaPredicted RBP12.36□□□□□ -0.43
CLCN3-210ENST00000515420 VASH2Q86V25 355 aa12.36□□□□□ -0.43
CLCN3-210ENST00000515420 RAB42Q8N4Z0 105 aa12.36□□□□□ -0.43
CLCN3-210ENST00000515420 C19orf47Q8N9M1 422 aaKnown RBP12.36□□□□□ -0.43
CLCN3-210ENST00000515420 C2CD4AQ8NCU7 369 aaPredicted RBP12.36□□□□□ -0.43
CLCN3-210ENST00000515420 OR2L8Q8NGY9 312 aa12.36□□□□□ -0.43
CLCN3-210ENST00000515420 FLVCR1-AS1Q8TAF5 88 aa12.36□□□□□ -0.43
CLCN3-210ENST00000515420 HMGCLL1Q8TB92 370 aa12.36□□□□□ -0.43
CLCN3-210ENST00000515420 ZNF501Q96CX3 271 aaPredicted RBP12.36□□□□□ -0.43
CLCN3-210ENST00000515420 PPM1MQ96MI6 270 aa12.36□□□□□ -0.43
CLCN3-210ENST00000515420 FBXO6Q9NRD1 293 aaPredicted RBP12.36□□□□□ -0.43
CLCN3-210ENST00000515420 SPATA7Q9P0W8 599 aa12.36□□□□□ -0.43
CLCN3-210ENST00000515420 PCDHB3Q9Y5E6 796 aa12.36□□□□□ -0.43
CLCN3-210ENST00000515420 TEX264Q9Y6I9 313 aa12.36□□□□□ -0.43
CLCN3-210ENST00000515420 CPNE3O75131 537 aaKnown RBP12.35□□□□□ -0.43
CLCN3-210ENST00000515420 KIAA0754O94854 1291 aa12.35□□□□□ -0.43
CLCN3-210ENST00000515420 C1orf105O95561 183 aa12.35□□□□□ -0.43
CLCN3-210ENST00000515420 CBSLP0DN79 551 aa12.35□□□□□ -0.43
CLCN3-210ENST00000515420 LIFP15018 202 aa12.35□□□□□ -0.43
CLCN3-210ENST00000515420 ST6GAL1P15907 406 aa12.35□□□□□ -0.43
CLCN3-210ENST00000515420 ZNF28P17035 718 aa12.35□□□□□ -0.43
CLCN3-210ENST00000515420 CD9P21926 228 aa12.35□□□□□ -0.43
CLCN3-210ENST00000515420 CBSP35520 551 aa12.35□□□□□ -0.43
CLCN3-210ENST00000515420 SRSF6Q13247 344 aaKnown RBP12.35□□□□□ -0.43
CLCN3-210ENST00000515420 LRRC8EQ6NSJ5 796 aa12.35□□□□□ -0.43
CLCN3-210ENST00000515420 PWWP2BQ6NUJ5 590 aa12.35□□□□□ -0.43
CLCN3-210ENST00000515420 C17orf53Q8N3J3 647 aaPredicted RBP12.35□□□□□ -0.43
CLCN3-210ENST00000515420 LINC01555Q8NAE3 123 aa12.35□□□□□ -0.43
CLCN3-210ENST00000515420 CFAP61Q8NHU2 1237 aa12.35□□□□□ -0.43
CLCN3-210ENST00000515420 SKA2Q8WVK7 121 aaPredicted RBP12.35□□□□□ -0.43
CLCN3-210ENST00000515420 TTC9Q92623 222 aa12.35□□□□□ -0.43
CLCN3-210ENST00000515420 CERS2Q96G23 380 aa12.35□□□□□ -0.43
CLCN3-210ENST00000515420 TCTN2Q96GX1 697 aa12.35□□□□□ -0.43
CLCN3-210ENST00000515420 LRFN5Q96NI6 719 aa12.35□□□□□ -0.43
CLCN3-210ENST00000515420 NRTNQ99748 197 aa12.35□□□□□ -0.43
CLCN3-210ENST00000515420 ERP44Q9BS26 406 aa12.35□□□□□ -0.43
CLCN3-210ENST00000515420 GPN2Q9H9Y4 310 aaPredicted RBP12.35□□□□□ -0.43
CLCN3-210ENST00000515420 SPHK1Q9NYA1 384 aa12.35□□□□□ -0.43
CLCN3-210ENST00000515420 WHRNQ9P202 907 aa12.35□□□□□ -0.43
CLCN3-210ENST00000515420 ZC3H7BQ9UGR2 993 aaKnown RBP12.35□□□□□ -0.43
CLCN3-210ENST00000515420 LNPEPQ9UIQ6 1025 aa12.35□□□□□ -0.43
CLCN3-210ENST00000515420 SLC39A10Q9ULF5 831 aa12.35□□□□□ -0.43
CLCN3-210ENST00000515420 CORO1CQ9ULV4 474 aaPredicted RBP12.35□□□□□ -0.43
CLCN3-210ENST00000515420 MED16Q9Y2X0 877 aa12.35□□□□□ -0.43
CLCN3-210ENST00000515420 DHRS7Q9Y394 339 aa12.35□□□□□ -0.43
CLCN3-210ENST00000515420 SPTBP11277 2137 aa12.34□□□□□ -0.43
CLCN3-210ENST00000515420 PCM1Q15154 2024 aa12.34□□□□□ -0.43
CLCN3-210ENST00000515420 LOC101059948A0A1B0GTJ6 334 aa12.34□□□□□ -0.43
CLCN3-210ENST00000515420 ZNF891A8MT65 544 aaPredicted RBP12.34□□□□□ -0.43
CLCN3-210ENST00000515420 VPS26AO75436 327 aa12.34□□□□□ -0.43
CLCN3-210ENST00000515420 PSIP1O75475 530 aaKnown RBP12.34□□□□□ -0.43
CLCN3-210ENST00000515420 BANF1O75531 89 aa12.34□□□□□ -0.43
CLCN3-210ENST00000515420 HAUS5O94927 633 aa12.34□□□□□ -0.43
CLCN3-210ENST00000515420 TIAF1O95411 115 aa12.34□□□□□ -0.43
CLCN3-210ENST00000515420 CCNYL3P0C7X3 344 aa12.34□□□□□ -0.43
CLCN3-210ENST00000515420 MPC1LP0DKB6 136 aa12.34□□□□□ -0.43
CLCN3-210ENST00000515420 PEBP1P30086 187 aaKnown RBP12.34□□□□□ -0.43
CLCN3-210ENST00000515420 ELK3P41970 407 aa12.34□□□□□ -0.43
CLCN3-210ENST00000515420 SKIV2L2P42285 1042 aaKnown RBP12.34□□□□□ -0.43
CLCN3-210ENST00000515420 RPL21P46778 160 aaKnown RBP12.34□□□□□ -0.43
CLCN3-210ENST00000515420 MC1RQ01726 317 aa12.34□□□□□ -0.43
CLCN3-210ENST00000515420 ILF2Q12905 390 aaKnown RBP12.34□□□□□ -0.43
CLCN3-210ENST00000515420 CALCOCO2Q13137 446 aa12.34□□□□□ -0.43
CLCN3-210ENST00000515420 GPR19Q15760 415 aa12.34□□□□□ -0.43
CLCN3-210ENST00000515420 SOWAHCQ53LP3 525 aaPredicted RBP12.34□□□□□ -0.43
CLCN3-210ENST00000515420 UGT3A1Q6NUS8 523 aa12.34□□□□□ -0.43
CLCN3-210ENST00000515420 ZNF549Q6P9A3 640 aa12.34□□□□□ -0.43
CLCN3-210ENST00000515420 FBXO38Q6PIJ6 1188 aa12.34□□□□□ -0.43
CLCN3-210ENST00000515420 TMEM126BQ8IUX1 230 aa12.34□□□□□ -0.43
CLCN3-210ENST00000515420 IGDCC3Q8IVU1 814 aa12.34□□□□□ -0.43
CLCN3-210ENST00000515420 GALNT6Q8NCL4 622 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms