RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 SLC22A16Q86VW1 577 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 EPHX4Q8IUS5 362 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 ARHGAP12Q8IWW6 846 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 MFSD2AQ8NA29 543 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 ZMIZ2Q8NF64 920 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 TRUB1Q8WWH5 349 aaKnown RBP8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 UPF1Q92900 1129 aaKnown RBP eCLIP8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 ZNF641Q96N77 438 aaPredicted RBP8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 AASDHPPTQ9NRN7 309 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 LAMB2P55268 1798 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 PRR23D1E9PI22 279 aaPredicted RBP8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 ARVCFO00192 962 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 SOCS7O14512 581 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 ZNF195O14628 629 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 CCNDBP1O95273 360 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 PRSS56P0CW18 603 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 PRR23D2P0DMB1 279 aaPredicted RBP8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 MAGEA12P43365 314 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 MVKQ03426 396 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 IL18R1Q13478 541 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 MARCH8Q5T0T0 291 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 GCNT6Q5T4J0 391 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 KLHL17Q6TDP4 642 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 KDELC1Q6UW63 502 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 DEF8Q6ZN54 512 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 ZFAND4Q86XD8 727 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 CNIH3Q8TBE1 160 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 UBE2E3Q969T4 207 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 GTPBP3Q969Y2 492 aaKnown RBP8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 TMEM125Q96AQ2 219 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 RNFT2Q96EX2 444 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 ZNF347Q96SE7 839 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 R3HDMLQ9H3Y0 253 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 KLHL28Q9NXS3 571 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 KIAA1522Q9P206 1035 aaPredicted RBP8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 ZNF221Q9UK13 617 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 WDR37Q9Y2I8 494 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 HEMK1Q9Y5R4 338 aaPredicted RBP8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 LTBP3Q9NS15 1303 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 RBM47A0AV96 593 aaKnown RBP8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 HPRP00739 348 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 ARRB2P32121 409 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 ARCN1P48444 511 aaKnown RBP8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 ATN1P54259 1190 aaPredicted RBP8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 ABHD18Q0P651 414 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 PAQR9Q6ZVX9 377 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 USP43Q70EL4 1123 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 OR52B6Q8NGF0 335 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 PLD4Q96BZ4 506 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 BBS4Q96RK4 519 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 MTERF1Q99551 399 aaKnown RBP8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 TMLHEQ9NVH6 421 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 FAM118AQ9NWS6 357 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 GMPR2Q9P2T1 348 aaKnown RBP8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 CDV3Q9UKY7 258 aaKnown RBP8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 MAP4K5Q9Y4K4 846 aa8.24□□□□□ -1.09
LIMCH1-216ENST00000512820 STRCP1A6NGW2 1772 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 ZNF701M0R085 212 aaPredicted RBP8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 QSOX1O00391 747 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 CYP7B1O75881 506 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 EOMESO95936 686 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 GLUD1P00367 558 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 PRKAR2AP13861 404 aaKnown RBP8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 PCSK2P16519 638 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 PRPS1L1P21108 318 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 FPR1P21462 350 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 PRKAG1P54619 331 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 FKBP1BP68106 108 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 QPRTQ15274 297 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 TMPRSS11BQ86T26 416 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 CAMKK1Q8N5S9 505 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 SLC15A4Q8N697 577 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 TRIM39Q9HCM9 518 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 PQBP1O60828 265 aaKnown RBP8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 XYLBO75191 536 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 FLT3LGP49771 235 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 IST1P53990 364 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 SMIM11AP58511 58 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 DPY19L1Q2PZI1 675 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 PRSS55Q6UWB4 352 aaPredicted RBP8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 KCNC2Q96PR1 638 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 DUSP26Q9BV47 211 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 FUNDC2Q9BWH2 189 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 CD84Q9UIB8 345 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 HAS3O00219 553 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 PLOD2O00469 737 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 INMTO95050 263 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 C8GP07360 202 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 ALDOCP09972 364 aaKnown RBP8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 RPL17P18621 184 aaKnown RBP8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 POLR2EP19388 210 aaKnown RBP8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 PSMA1P25786 263 aaKnown RBP8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 ADAM17P78536 824 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 SLC36A3Q495N2 470 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 MZT2BQ6NZ67 158 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 FAM131AQ6UXB0 335 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 RETREG3Q86VR2 466 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 ARMC8Q8IUR7 673 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 ALDH16A1Q8IZ83 802 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 FUBP1Q96AE4 644 aaKnown RBP8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms