RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 XPNPEP1Q9NQW7 623 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 PIM2Q9P1W9 311 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 MED31Q9Y3C7 131 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 TVP23AA6NH52 213 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 C1QTNF3-AMACRE9PGA6 284 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 ADAMTS3O15072 1205 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 PLATP00750 562 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 ANXA4P09525 319 aaPredicted RBP11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 CKBP12277 381 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 RPS14P62263 151 aaKnown RBP11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 BLOC1S1P78537 153 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 C2orf80Q0P641 193 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 SEC23AQ15436 765 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 GPR153Q6NV75 609 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 METTL7BQ6UX53 244 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 CCBE1Q6UXH8 406 aaPredicted RBP11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 ALDH16A1Q8IZ83 802 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 GDPD1Q8N9F7 314 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 SLC43A3Q8NBI5 491 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 OR10A6Q8NH74 314 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 AHCYL2Q96HN2 611 aaKnown RBP11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 GPRC5CQ9NQ84 441 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 ARL5AQ9Y689 179 aa11.03□□□□□ -0.64
LIMCH1-208ENST00000508501 ATP6V1G2-DDX39BF2Z307 99 aa11.02□□□□□ -0.64
LIMCH1-208ENST00000508501 FLRT2O43155 660 aa11.02□□□□□ -0.64
LIMCH1-208ENST00000508501 RBBP9O75884 186 aa11.02□□□□□ -0.64
LIMCH1-208ENST00000508501 PRPS1L1P21108 318 aa11.02□□□□□ -0.64
LIMCH1-208ENST00000508501 ITPKBP27987 946 aa11.02□□□□□ -0.64
LIMCH1-208ENST00000508501 CD6P30203 668 aa11.02□□□□□ -0.64
LIMCH1-208ENST00000508501 MSX2P35548 267 aaPredicted RBP11.02□□□□□ -0.64
LIMCH1-208ENST00000508501 ABCG1P45844 678 aa11.02□□□□□ -0.64
LIMCH1-208ENST00000508501 THOP1P52888 689 aa11.02□□□□□ -0.64
LIMCH1-208ENST00000508501 PPATQ06203 517 aa11.02□□□□□ -0.64
LIMCH1-208ENST00000508501 SNAPC2Q13487 334 aa11.02□□□□□ -0.64
LIMCH1-208ENST00000508501 DSC3Q14574 896 aa11.02□□□□□ -0.64
LIMCH1-208ENST00000508501 CRB2Q5IJ48 1285 aa11.02□□□□□ -0.64
LIMCH1-208ENST00000508501 CERCAMQ5T4B2 595 aa11.02□□□□□ -0.64
LIMCH1-208ENST00000508501 SCIMPQ6UWF3 145 aa11.02□□□□□ -0.64
LIMCH1-208ENST00000508501 C3orf67Q6ZVT6 689 aa11.02□□□□□ -0.64
LIMCH1-208ENST00000508501 SCUBE3Q8IX30 993 aa11.02□□□□□ -0.64
LIMCH1-208ENST00000508501 PCSK9Q8NBP7 692 aaKnown RBP11.02□□□□□ -0.64
LIMCH1-208ENST00000508501 OR2AJ1Q8NGZ0 328 aa11.02□□□□□ -0.64
LIMCH1-208ENST00000508501 ZBED6CLQ96FA7 236 aaPredicted RBP11.02□□□□□ -0.64
LIMCH1-208ENST00000508501 ZBED3Q96IU2 234 aaPredicted RBP11.02□□□□□ -0.64
LIMCH1-208ENST00000508501 OR51E2Q9H255 320 aa11.02□□□□□ -0.64
LIMCH1-208ENST00000508501 AGO4Q9HCK5 861 aaKnown RBP11.02□□□□□ -0.64
LIMCH1-208ENST00000508501 CFAP97Q9P2B7 532 aa11.02□□□□□ -0.64
LIMCH1-208ENST00000508501 ZNHIT2Q9UHR6 403 aa11.02□□□□□ -0.64
LIMCH1-208ENST00000508501 OAZ3Q9UMX2 235 aa11.02□□□□□ -0.64
LIMCH1-208ENST00000508501 GRIN2DO15399 1336 aa11.02□□□□□ -0.64
LIMCH1-208ENST00000508501 PLA2R1Q13018 1463 aa11.02□□□□□ -0.64
LIMCH1-208ENST00000508501 ZNF705EA8MWA4 302 aaPredicted RBP11.02□□□□□ -0.65
LIMCH1-208ENST00000508501 SSX5O60225 188 aa11.02□□□□□ -0.65
LIMCH1-208ENST00000508501 LRATO95237 230 aa11.02□□□□□ -0.65
LIMCH1-208ENST00000508501 PAHP00439 452 aa11.02□□□□□ -0.65
LIMCH1-208ENST00000508501 H2AFB2P0C5Z0 115 aa11.02□□□□□ -0.65
LIMCH1-208ENST00000508501 KELP23276 732 aa11.02□□□□□ -0.65
LIMCH1-208ENST00000508501 VEGFCP49767 419 aa11.02□□□□□ -0.65
LIMCH1-208ENST00000508501 WNT3AP56704 352 aa11.02□□□□□ -0.65
LIMCH1-208ENST00000508501 VLDLRP98155 873 aa11.02□□□□□ -0.65
LIMCH1-208ENST00000508501 LAMTOR4Q0VGL1 99 aa11.02□□□□□ -0.65
LIMCH1-208ENST00000508501 TSTQ16762 297 aaKnown RBP11.02□□□□□ -0.65
LIMCH1-208ENST00000508501 MED27Q6P2C8 311 aa11.02□□□□□ -0.65
LIMCH1-208ENST00000508501 UGT2A3Q6UWM9 527 aa11.02□□□□□ -0.65
LIMCH1-208ENST00000508501 SLC30A10Q6XR72 485 aa11.02□□□□□ -0.65
LIMCH1-208ENST00000508501 LRRC55Q6ZSA7 311 aa11.02□□□□□ -0.65
LIMCH1-208ENST00000508501 BBS1Q8NFJ9 593 aa11.02□□□□□ -0.65
LIMCH1-208ENST00000508501 CXorf40AQ8TE69 158 aa11.02□□□□□ -0.65
LIMCH1-208ENST00000508501 PPP1R13LQ8WUF5 828 aa11.02□□□□□ -0.65
LIMCH1-208ENST00000508501 GTPBP3Q969Y2 492 aaKnown RBP11.02□□□□□ -0.65
LIMCH1-208ENST00000508501 SLC45A3Q96JT2 553 aa11.02□□□□□ -0.65
LIMCH1-208ENST00000508501 TMEM68Q96MH6 324 aa11.02□□□□□ -0.65
LIMCH1-208ENST00000508501 TAAR1Q96RJ0 339 aa11.02□□□□□ -0.65
LIMCH1-208ENST00000508501 SEMA3CQ99985 751 aa11.02□□□□□ -0.65
LIMCH1-208ENST00000508501 MCMBPQ9BTE3 642 aa11.02□□□□□ -0.65
LIMCH1-208ENST00000508501 EIF5A2Q9GZV4 153 aaKnown RBP11.02□□□□□ -0.65
LIMCH1-208ENST00000508501 OR10A4Q9H209 315 aa11.02□□□□□ -0.65
LIMCH1-208ENST00000508501 C11orf16Q9NQ32 467 aa11.02□□□□□ -0.65
LIMCH1-208ENST00000508501 MARCH2Q9P0N8 246 aa11.02□□□□□ -0.65
LIMCH1-208ENST00000508501 MAP10Q9P2G4 905 aa11.02□□□□□ -0.65
LIMCH1-208ENST00000508501 NFASCO94856 1347 aa11.02□□□□□ -0.65
LIMCH1-208ENST00000508501 PTPRJQ12913 1337 aa11.02□□□□□ -0.65
LIMCH1-208ENST00000508501 ELOA3DA6NLF2 546 aaPredicted RBP11.02□□□□□ -0.65
LIMCH1-208ENST00000508501 ZNF670-ZNF695F2Z2N8 137 aa11.02□□□□□ -0.65
LIMCH1-208ENST00000508501 CTPS1P17812 591 aa11.02□□□□□ -0.65
LIMCH1-208ENST00000508501 RAB3BP20337 219 aa11.02□□□□□ -0.65
LIMCH1-208ENST00000508501 FMO1Q01740 532 aa11.02□□□□□ -0.65
LIMCH1-208ENST00000508501 TARDBPQ13148 414 aaKnown RBP eCLIP11.02□□□□□ -0.65
LIMCH1-208ENST00000508501 HLFQ16534 295 aa11.02□□□□□ -0.65
LIMCH1-208ENST00000508501 ELOA3BQ3SY89 546 aa11.02□□□□□ -0.65
LIMCH1-208ENST00000508501 SH3PXD2AQ5TCZ1 1133 aa11.02□□□□□ -0.65
LIMCH1-208ENST00000508501 KIAA1614Q5VZ46 1190 aa11.02□□□□□ -0.65
LIMCH1-208ENST00000508501 CMC1Q7Z7K0 106 aa11.02□□□□□ -0.65
LIMCH1-208ENST00000508501 SCML4Q8N228 414 aa11.02□□□□□ -0.65
LIMCH1-208ENST00000508501 GTPBP8Q8N3Z3 284 aaPredicted RBP11.02□□□□□ -0.65
LIMCH1-208ENST00000508501 ELOA3Q8NG57 546 aa11.02□□□□□ -0.65
LIMCH1-208ENST00000508501 EDEM1Q92611 657 aa11.02□□□□□ -0.65
LIMCH1-208ENST00000508501 TWNKQ96RR1 684 aa11.02□□□□□ -0.65
LIMCH1-208ENST00000508501 PRMT8Q9NR22 394 aaPredicted RBP11.02□□□□□ -0.65
LIMCH1-208ENST00000508501 TUBG2Q9NRH3 451 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms