RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 ALAS2P22557 587 aa20.28■□□□□ 0.84
SQSTM1-210ENST00000506042 MSNP26038 577 aaKnown RBP20.28■□□□□ 0.84
SQSTM1-210ENST00000506042 DNAJC21Q5F1R6 531 aaKnown RBP20.28■□□□□ 0.84
SQSTM1-210ENST00000506042 TCTE1Q5JU00 501 aa20.28■□□□□ 0.84
SQSTM1-210ENST00000506042 AGAP7PQ5VUJ5 663 aa20.28■□□□□ 0.84
SQSTM1-210ENST00000506042 PACS1Q6VY07 963 aa20.28■□□□□ 0.84
SQSTM1-210ENST00000506042 CLDN19Q8N6F1 224 aa20.28■□□□□ 0.84
SQSTM1-210ENST00000506042 TTC29Q8NA56 475 aaPredicted RBP20.28■□□□□ 0.84
SQSTM1-210ENST00000506042 OR5AR1Q8NGP9 310 aa20.28■□□□□ 0.84
SQSTM1-210ENST00000506042 NAT14Q8WUY8 206 aa20.28■□□□□ 0.84
SQSTM1-210ENST00000506042 CDKN2AIPNLQ96HQ2 116 aa20.28■□□□□ 0.84
SQSTM1-210ENST00000506042 AGAP4Q96P64 663 aa20.28■□□□□ 0.84
SQSTM1-210ENST00000506042 OR2A14Q96R47 310 aa20.28■□□□□ 0.84
SQSTM1-210ENST00000506042 WDR77Q9BQA1 342 aaPredicted RBP20.28■□□□□ 0.84
SQSTM1-210ENST00000506042 GOLPH3Q9H4A6 298 aa20.28■□□□□ 0.84
SQSTM1-210ENST00000506042 WDR54Q9H977 334 aa20.28■□□□□ 0.84
SQSTM1-210ENST00000506042 SHANK1Q9Y566 2161 aa20.27■□□□□ 0.84
SQSTM1-210ENST00000506042 A0A1B0GX78 115 aa20.27■□□□□ 0.84
SQSTM1-210ENST00000506042 ERI2A8K979 691 aaKnown RBP20.27■□□□□ 0.84
SQSTM1-210ENST00000506042 CBX6O95503 412 aa20.27■□□□□ 0.84
SQSTM1-210ENST00000506042 CBSLP0DN79 551 aa20.27■□□□□ 0.84
SQSTM1-210ENST00000506042 CBSP35520 551 aa20.27■□□□□ 0.84
SQSTM1-210ENST00000506042 MARCKSL1P49006 195 aa20.27■□□□□ 0.84
SQSTM1-210ENST00000506042 POU6F1Q14863 301 aa20.27■□□□□ 0.84
SQSTM1-210ENST00000506042 NAA25Q14CX7 972 aa20.27■□□□□ 0.84
SQSTM1-210ENST00000506042 TMED2Q15363 201 aa20.27■□□□□ 0.84
SQSTM1-210ENST00000506042 AARS2Q5JTZ9 985 aaKnown RBP20.27■□□□□ 0.84
SQSTM1-210ENST00000506042 DNAAF3Q8N9W5 541 aa20.27■□□□□ 0.84
SQSTM1-210ENST00000506042 PPP4R1Q8TF05 950 aa20.27■□□□□ 0.84
SQSTM1-210ENST00000506042 UBE2Q2Q8WVN8 375 aa20.27■□□□□ 0.84
SQSTM1-210ENST00000506042 KRT35Q92764 455 aa20.27■□□□□ 0.84
SQSTM1-210ENST00000506042 CDC23Q9UJX2 597 aa20.27■□□□□ 0.84
SQSTM1-210ENST00000506042 ANAPC5Q9UJX4 755 aa20.27■□□□□ 0.84
SQSTM1-210ENST00000506042 ICE1Q9Y2F5 2266 aa20.27■□□□□ 0.83
SQSTM1-210ENST00000506042 LDLRP01130 860 aa20.26■□□□□ 0.83
SQSTM1-210ENST00000506042 MMP11P24347 488 aa20.26■□□□□ 0.83
SQSTM1-210ENST00000506042 RAB28P51157 221 aa20.26■□□□□ 0.83
SQSTM1-210ENST00000506042 GRM7Q14831 915 aa20.26■□□□□ 0.83
SQSTM1-210ENST00000506042 DBN1Q16643 649 aa20.26■□□□□ 0.83
SQSTM1-210ENST00000506042 DEFB110Q30KQ9 67 aa20.26■□□□□ 0.83
SQSTM1-210ENST00000506042 FAM214AQ32MH5 1076 aa20.26■□□□□ 0.83
SQSTM1-210ENST00000506042 FAM69BQ5VUD6 431 aa20.26■□□□□ 0.83
SQSTM1-210ENST00000506042 FCRL6Q6DN72 434 aa20.26■□□□□ 0.83
SQSTM1-210ENST00000506042 SYCE1Q8N0S2 351 aa20.26■□□□□ 0.83
SQSTM1-210ENST00000506042 ST6GALNAC3Q8NDV1 305 aa20.26■□□□□ 0.83
SQSTM1-210ENST00000506042 ASZ1Q8WWH4 475 aa20.26■□□□□ 0.83
SQSTM1-210ENST00000506042 GORASP1Q9BQQ3 440 aa20.26■□□□□ 0.83
SQSTM1-210ENST00000506042 SPRTNQ9H040 489 aaPredicted RBP20.26■□□□□ 0.83
SQSTM1-210ENST00000506042 ZNF552Q9H707 407 aaPredicted RBP20.26■□□□□ 0.83
SQSTM1-210ENST00000506042 C10orf88Q9H8K7 445 aa20.26■□□□□ 0.83
SQSTM1-210ENST00000506042 DHCR7Q9UBM7 475 aaKnown RBP20.26■□□□□ 0.83
SQSTM1-210ENST00000506042 SLC39A10Q9ULF5 831 aa20.26■□□□□ 0.83
SQSTM1-210ENST00000506042 CDYLQ9Y232 598 aa20.26■□□□□ 0.83
SQSTM1-210ENST00000506042 MED13Q9UHV7 2174 aa20.26■□□□□ 0.83
SQSTM1-210ENST00000506042 SPTAN1Q13813 2472 aaKnown RBP20.25■□□□□ 0.83
SQSTM1-210ENST00000506042 HEATR9A2RTY3 570 aa20.25■□□□□ 0.83
SQSTM1-210ENST00000506042 KRT86O43790 486 aa20.25■□□□□ 0.83
SQSTM1-210ENST00000506042 S1PR4O95977 384 aa20.25■□□□□ 0.83
SQSTM1-210ENST00000506042 APOA4P06727 396 aa20.25■□□□□ 0.83
SQSTM1-210ENST00000506042 ATXN8OSP0DMR3 200 aa20.25■□□□□ 0.83
SQSTM1-210ENST00000506042 SPARCL1Q14515 664 aa20.25■□□□□ 0.83
SQSTM1-210ENST00000506042 BRD3Q15059 726 aa20.25■□□□□ 0.83
SQSTM1-210ENST00000506042 PRAMEF13Q5VWM6 474 aa20.25■□□□□ 0.83
SQSTM1-210ENST00000506042 B3GNTL1Q67FW5 361 aaPredicted RBP20.25■□□□□ 0.83
SQSTM1-210ENST00000506042 DENND5AQ6IQ26 1287 aa20.25■□□□□ 0.83
SQSTM1-210ENST00000506042 AFTPHQ6ULP2 937 aa20.25■□□□□ 0.83
SQSTM1-210ENST00000506042 Q6ZS92 163 aa20.25■□□□□ 0.83
SQSTM1-210ENST00000506042 NLRP9Q7RTR0 991 aa20.25■□□□□ 0.83
SQSTM1-210ENST00000506042 TRIM73Q86UV7 250 aa20.25■□□□□ 0.83
SQSTM1-210ENST00000506042 TRIM5Q9C035 493 aa20.25■□□□□ 0.83
SQSTM1-210ENST00000506042 FAM60AQ9NP50 221 aa20.25■□□□□ 0.83
SQSTM1-210ENST00000506042 EURLQ9NYK6 297 aa20.25■□□□□ 0.83
SQSTM1-210ENST00000506042 ERRFI1Q9UJM3 462 aaPredicted RBP20.25■□□□□ 0.83
SQSTM1-210ENST00000506042 FAM169AQ9Y6X4 670 aa20.25■□□□□ 0.83
SQSTM1-210ENST00000506042 USP9XQ93008 2570 aaPredicted RBP20.24■□□□□ 0.83
SQSTM1-210ENST00000506042 WIPF3A6NGB9 483 aa20.24■□□□□ 0.83
SQSTM1-210ENST00000506042 E7EVH7 732 aa20.24■□□□□ 0.83
SQSTM1-210ENST00000506042 CCL22O00626 93 aa20.24■□□□□ 0.83
SQSTM1-210ENST00000506042 CDH17Q12864 832 aa20.24■□□□□ 0.83
SQSTM1-210ENST00000506042 OLIG2Q13516 323 aa20.24■□□□□ 0.83
SQSTM1-210ENST00000506042 SLC9A5Q14940 896 aa20.24■□□□□ 0.83
SQSTM1-210ENST00000506042 TUBB8Q3ZCM7 444 aa20.24■□□□□ 0.83
SQSTM1-210ENST00000506042 ZNF658BQ4V348 819 aaPredicted RBP20.24■□□□□ 0.83
SQSTM1-210ENST00000506042 HIST2H2BCQ6DN03 193 aa20.24■□□□□ 0.83
SQSTM1-210ENST00000506042 MRPL14Q6P1L8 145 aaKnown RBP20.24■□□□□ 0.83
SQSTM1-210ENST00000506042 TTLL10Q6ZVT0 673 aa20.24■□□□□ 0.83
SQSTM1-210ENST00000506042 DCUN1D3Q8IWE4 304 aa20.24■□□□□ 0.83
SQSTM1-210ENST00000506042 MOCOSQ96EN8 888 aa20.24■□□□□ 0.83
SQSTM1-210ENST00000506042 C19orf60Q96EN9 201 aa20.24■□□□□ 0.83
SQSTM1-210ENST00000506042 SEMA3GQ9NS98 782 aa20.24■□□□□ 0.83
SQSTM1-210ENST00000506042 RELNP78509 3460 aa20.24■□□□□ 0.83
SQSTM1-210ENST00000506042 PIKFYVEQ9Y2I7 2098 aa20.23■□□□□ 0.83
SQSTM1-210ENST00000506042 MIF4GDA9UHW6 222 aaKnown RBP20.23■□□□□ 0.83
SQSTM1-210ENST00000506042 KPNA5O15131 536 aa20.23■□□□□ 0.83
SQSTM1-210ENST00000506042 UQCRHP07919 91 aa20.23■□□□□ 0.83
SQSTM1-210ENST00000506042 MYBL2P10244 700 aa20.23■□□□□ 0.83
SQSTM1-210ENST00000506042 ACADLP28330 430 aa20.23■□□□□ 0.83
SQSTM1-210ENST00000506042 CARSP49589 748 aaKnown RBP20.23■□□□□ 0.83
SQSTM1-210ENST00000506042 CDKN1CP49918 316 aaPredicted RBP20.23■□□□□ 0.83
SQSTM1-210ENST00000506042 PRAMEP78395 509 aa20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms