RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 RABL3Q5HYI8 236 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 C6orf136Q5SQH8 315 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 C22orf39Q6P5X5 142 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 SYVN1Q86TM6 617 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 MOCOSQ96EN8 888 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 CMTM7Q96FZ5 175 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 LRCH3Q96II8 777 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 NSUN5Q96P11 429 aaKnown RBP10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 NSUN3Q9H649 340 aaKnown RBP10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 C3orf14Q9HBI5 128 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 GIMAP2Q9UG22 337 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 ATP6V1HQ9UI12 483 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 SLC27A6Q9Y2P4 619 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 USP3Q9Y6I4 520 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 HTRA2O43464 458 aaPredicted RBP10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 DENRO43583 198 aaKnown RBP10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 OR1I1O60431 355 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 PGRP06401 933 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 C7P10643 843 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 EIF2B5Q13144 721 aaKnown RBP10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 PPIGQ13427 754 aaKnown RBP eCLIP10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 KCNC3Q14003 757 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 MFSD4BQ5TF39 518 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 OTOP2Q7RTS6 562 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 GALNT7Q86SF2 657 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 ARMC8Q8IUR7 673 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 CHPFQ8IZ52 775 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 OR8J3Q8NGG0 315 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 FEM1AQ9BSK4 669 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 CCM2Q9BSQ5 444 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 TREX1Q9NSU2 369 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 CCM2LQ9NUG4 571 aaPredicted RBP10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 AIG1Q9NVV5 245 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 DOCK1Q14185 1865 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 ZNF840PA6NDX5 716 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 FADS2P1A8MWK0 482 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 ERAL1O75616 437 aaKnown RBP10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 ZBTB11O95625 1053 aaPredicted RBP10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 ALDH3A2P51648 485 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 MAPK12P53778 367 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 CYP4F2P78329 520 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 KBTBD6Q86V97 674 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 ARHGAP12Q8IWW6 846 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 NXPE1Q8N323 547 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 C3orf58Q8NDZ4 430 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 SLC22A17Q8WUG5 538 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 SMG7Q92540 1137 aaKnown RBP10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 PAWRQ96IZ0 340 aaKnown RBP10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 SLC45A3Q96JT2 553 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 TMEM74Q96NL1 305 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 TMEM189-UBE2V1I3L0A0 370 aa10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 WNT9AO14904 365 aa10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 CCNYL3P0C7X3 344 aa10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 PGGT1BP53609 377 aa10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 GRB7Q14451 532 aa10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 OR4D1Q15615 310 aa10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 LRRC73Q5JTD7 316 aa10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 PAQR9Q6ZVX9 377 aa10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 ISCA2Q86U28 154 aa10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 P2RY8Q86VZ1 359 aa10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 DPP10Q8N608 796 aa10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 KDM1BQ8NB78 822 aa10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 FBXO27Q8NI29 283 aa10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 PIH1D2Q8WWB5 315 aa10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 SEC14L3Q9UDX4 400 aa10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 PRR23D1E9PI22 279 aaPredicted RBP10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 AP3D1O14617 1153 aa10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 PI15O43692 258 aa10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 PCDH7O60245 1069 aa10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 APODP05090 189 aa10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 PRR23D2P0DMB1 279 aaPredicted RBP10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 BUD31P41223 144 aaPredicted RBP10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 DIO3P55073 304 aa10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 SEMG2Q02383 582 aa10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 MED22Q15528 200 aa10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 ATP6AP1Q15904 470 aa10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 CES5AQ6NT32 575 aa10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 MZT2AQ6P582 158 aa10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 MAPK15Q8TD08 544 aa10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 IPCEF1Q8WWN9 437 aaPredicted RBP10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 MTERF1Q99551 399 aaKnown RBP10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 RIOK2Q9BVS4 552 aaKnown RBP10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 AASDHPPTQ9NRN7 309 aa10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 IMP3Q9NV31 184 aaKnown RBP10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 CIDEBQ9UHD4 219 aa10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 CAB39Q9Y376 341 aaPredicted RBP10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 RNF11Q9Y3C5 154 aa10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 BACE2Q9Y5Z0 518 aa10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 ZNF99A8MXY4 864 aaPredicted RBP10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 ISM1B1AKI9 464 aa10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 NDUFS2O75306 463 aa10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 LINGO3P0C6S8 592 aa10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 ACRV1P26436 265 aa10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 HTR1BP28222 390 aa10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 DNAJA1P31689 397 aaKnown RBP10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 GALK1P51570 392 aa10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 ARSIQ5FYB1 569 aa10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 RSBN1Q5VWQ0 802 aaPredicted RBP10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 NEK5Q6P3R8 708 aa10.53□□□□□ -0.72
LIMCH1-205ENST00000503057 PLEKHM3Q6ZWE6 761 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms