RNA–Protein interactions for RNA: ENST00000502394.1

MATR3-231, Transcript of matrin 3, human

TSL 4

Gene MATR3, Length 589 nt, Biotype non stop decay, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MATR3-231	ENST00000502394	FGFR1OP2	Q9NVK5	253 aa		11.82	□□□□□ -0.52
MATR3-231	ENST00000502394	ARL15	Q9NXU5	204 aa		11.82	□□□□□ -0.52
MATR3-231	ENST00000502394	STOX2	Q9P2F5	926 aa	Predicted RBP	11.82	□□□□□ -0.52
MATR3-231	ENST00000502394	APOBEC3B	Q9UH17	382 aa	Known RBP	11.82	□□□□□ -0.52
MATR3-231	ENST00000502394	PCDHGA2	Q9Y5H1	932 aa		11.82	□□□□□ -0.52
MATR3-231	ENST00000502394	TNPO3	Q9Y5L0	923 aa	Known RBP	11.82	□□□□□ -0.52
MATR3-231	ENST00000502394	KNL1	Q8NG31	2342 aa		11.82	□□□□□ -0.52
MATR3-231	ENST00000502394	ATXN2	Q99700	1313 aa	Known RBP	11.82	□□□□□ -0.52
MATR3-231	ENST00000502394	ZNF318	Q5VUA4	2279 aa		11.81	□□□□□ -0.52
MATR3-231	ENST00000502394		A0A0C4DFX4	3053 aa		11.81	□□□□□ -0.52
MATR3-231	ENST00000502394	CACNA1E	Q15878	2313 aa		11.81	□□□□□ -0.52
MATR3-231	ENST00000502394	FAM86C2P	A6NEL3	165 aa		11.81	□□□□□ -0.52
MATR3-231	ENST00000502394	SNX2	O60749	519 aa		11.81	□□□□□ -0.52
MATR3-231	ENST00000502394	S100B	P04271	92 aa	Predicted RBP	11.81	□□□□□ -0.52
MATR3-231	ENST00000502394	CHRNG	P07510	517 aa		11.81	□□□□□ -0.52
MATR3-231	ENST00000502394	VIM	P08670	466 aa	Known RBP	11.81	□□□□□ -0.52
MATR3-231	ENST00000502394	HIST1H2AG	P0C0S8	130 aa	Predicted RBP	11.81	□□□□□ -0.52
MATR3-231	ENST00000502394	JUND	P17535	347 aa		11.81	□□□□□ -0.52
MATR3-231	ENST00000502394	HIST1H2AD	P20671	130 aa		11.81	□□□□□ -0.52
MATR3-231	ENST00000502394	HOXD12	P35452	270 aa		11.81	□□□□□ -0.52
MATR3-231	ENST00000502394	ILF3	Q12906	894 aa	Known RBP eCLIP	11.81	□□□□□ -0.52	8e-9	■■■■□ 24.5
MATR3-231	ENST00000502394	FBXO48	Q5FWF7	155 aa		11.81	□□□□□ -0.52
MATR3-231	ENST00000502394	ARL13A	Q5H913	290 aa	Predicted RBP	11.81	□□□□□ -0.52
MATR3-231	ENST00000502394	DUS1L	Q6P1R4	473 aa	Known RBP	11.81	□□□□□ -0.52
MATR3-231	ENST00000502394	RAB44	Q7Z6P3	723 aa	Predicted RBP	11.81	□□□□□ -0.52
MATR3-231	ENST00000502394	CCNYL1	Q8N7R7	359 aa		11.81	□□□□□ -0.52
MATR3-231	ENST00000502394	PHC3	Q8NDX5	983 aa		11.81	□□□□□ -0.52
MATR3-231	ENST00000502394	OR9A1P	Q8NGU1	263 aa		11.81	□□□□□ -0.52
MATR3-231	ENST00000502394	OR56A3	Q8NH54	315 aa		11.81	□□□□□ -0.52
MATR3-231	ENST00000502394	PPP1R14C	Q8TAE6	165 aa		11.81	□□□□□ -0.52
MATR3-231	ENST00000502394	ESAM	Q96AP7	390 aa		11.81	□□□□□ -0.52
MATR3-231	ENST00000502394	SKA1	Q96BD8	255 aa		11.81	□□□□□ -0.52
MATR3-231	ENST00000502394	HIST1H2AH	Q96KK5	128 aa		11.81	□□□□□ -0.52
MATR3-231	ENST00000502394	C12orf66	Q96MD2	445 aa		11.81	□□□□□ -0.52
MATR3-231	ENST00000502394	HIST1H2AJ	Q99878	128 aa		11.81	□□□□□ -0.52
MATR3-231	ENST00000502394	EGFL8	Q99944	293 aa		11.81	□□□□□ -0.52
MATR3-231	ENST00000502394	H2AFJ	Q9BTM1	129 aa		11.81	□□□□□ -0.52
MATR3-231	ENST00000502394	CD244	Q9BZW8	370 aa		11.81	□□□□□ -0.52
MATR3-231	ENST00000502394	TWSG1	Q9GZX9	223 aa		11.81	□□□□□ -0.52
MATR3-231	ENST00000502394	MVB12B	Q9H7P6	319 aa		11.81	□□□□□ -0.52
MATR3-231	ENST00000502394	WWOX	Q9NZC7	414 aa		11.81	□□□□□ -0.52
MATR3-231	ENST00000502394	TAAR2	Q9P1P5	351 aa		11.81	□□□□□ -0.52
MATR3-231	ENST00000502394	SUSD2	Q9UGT4	822 aa		11.81	□□□□□ -0.52
MATR3-231	ENST00000502394	ASF1A	Q9Y294	204 aa		11.81	□□□□□ -0.52
MATR3-231	ENST00000502394	ANKRD12	Q6UB98	2062 aa		11.81	□□□□□ -0.52
MATR3-231	ENST00000502394		A0A1B0GVT2	93 aa		11.8	□□□□□ -0.52
MATR3-231	ENST00000502394	OR52A4P	A6NMU1	304 aa		11.8	□□□□□ -0.52
MATR3-231	ENST00000502394	PDZK1P1	A8MUH7	402 aa		11.8	□□□□□ -0.52
MATR3-231	ENST00000502394	PRR33	A8MZF0	331 aa		11.8	□□□□□ -0.52
MATR3-231	ENST00000502394	UBFD1	O14562	309 aa	Known RBP	11.8	□□□□□ -0.52
MATR3-231	ENST00000502394	SUPT7L	O94864	414 aa		11.8	□□□□□ -0.52
MATR3-231	ENST00000502394	SNUPN	O95149	360 aa	Known RBP	11.8	□□□□□ -0.52
MATR3-231	ENST00000502394	TGDS	O95455	350 aa		11.8	□□□□□ -0.52
MATR3-231	ENST00000502394	SLC16A8	O95907	504 aa		11.8	□□□□□ -0.52
MATR3-231	ENST00000502394	FAM107A	O95990	144 aa		11.8	□□□□□ -0.52
MATR3-231	ENST00000502394	RPN2	P04844	631 aa		11.8	□□□□□ -0.52
MATR3-231	ENST00000502394	MTHFD1	P11586	935 aa	Known RBP	11.8	□□□□□ -0.52
MATR3-231	ENST00000502394	F3	P13726	295 aa		11.8	□□□□□ -0.52
MATR3-231	ENST00000502394	MAP4	P27816	1152 aa	Known RBP	11.8	□□□□□ -0.52
MATR3-231	ENST00000502394	RXRG	P48443	463 aa		11.8	□□□□□ -0.52
MATR3-231	ENST00000502394	HSPA7	P48741	367 aa		11.8	□□□□□ -0.52
MATR3-231	ENST00000502394	UBE2I	P63279	158 aa	Known RBP	11.8	□□□□□ -0.52
MATR3-231	ENST00000502394	CLC	Q05315	142 aa		11.8	□□□□□ -0.52
MATR3-231	ENST00000502394	TEAD4	Q15561	434 aa		11.8	□□□□□ -0.52
MATR3-231	ENST00000502394	CYP2A13	Q16696	494 aa		11.8	□□□□□ -0.52
MATR3-231	ENST00000502394	IYD	Q6PHW0	289 aa		11.8	□□□□□ -0.52
MATR3-231	ENST00000502394	BRICD5	Q6PL45	260 aa		11.8	□□□□□ -0.52
MATR3-231	ENST00000502394	SLC30A9	Q6PML9	568 aa		11.8	□□□□□ -0.52
MATR3-231	ENST00000502394	AGTRAP	Q6RW13	159 aa		11.8	□□□□□ -0.52
MATR3-231	ENST00000502394	CEP68	Q76N32	757 aa		11.8	□□□□□ -0.52
MATR3-231	ENST00000502394	LRRC70	Q7Z2Q7	622 aa		11.8	□□□□□ -0.52
MATR3-231	ENST00000502394	SYT12	Q8IV01	421 aa		11.8	□□□□□ -0.52
MATR3-231	ENST00000502394	MAGEC3	Q8TD91	643 aa		11.8	□□□□□ -0.52
MATR3-231	ENST00000502394	ZNF480	Q8WV37	535 aa		11.8	□□□□□ -0.52
MATR3-231	ENST00000502394	ATL1	Q8WXF7	558 aa		11.8	□□□□□ -0.52
MATR3-231	ENST00000502394	RAD51AP1	Q96B01	352 aa		11.8	□□□□□ -0.52
MATR3-231	ENST00000502394	CCT8L2	Q96SF2	557 aa		11.8	□□□□□ -0.52
MATR3-231	ENST00000502394	SPSB2	Q99619	263 aa		11.8	□□□□□ -0.52
MATR3-231	ENST00000502394	TRIT1	Q9H3H1	467 aa	Known RBP	11.8	□□□□□ -0.52
MATR3-231	ENST00000502394	TNFRSF12A	Q9NP84	129 aa		11.8	□□□□□ -0.52
MATR3-231	ENST00000502394	DNAJC28	Q9NX36	388 aa		11.8	□□□□□ -0.52
MATR3-231	ENST00000502394	SPATA7	Q9P0W8	599 aa		11.8	□□□□□ -0.52
MATR3-231	ENST00000502394	ZNF624	Q9P2J8	865 aa	Predicted RBP	11.8	□□□□□ -0.52
MATR3-231	ENST00000502394	ZNF225	Q9UK10	706 aa		11.8	□□□□□ -0.52
MATR3-231	ENST00000502394	EPB41L3	Q9Y2J2	1087 aa	Predicted RBP	11.8	□□□□□ -0.52
MATR3-231	ENST00000502394	RAP2C	Q9Y3L5	183 aa		11.8	□□□□□ -0.52
MATR3-231	ENST00000502394	HEBP2	Q9Y5Z4	205 aa		11.8	□□□□□ -0.52
MATR3-231	ENST00000502394	CFAP20	Q9Y6A4	193 aa	Known RBP	11.8	□□□□□ -0.52
MATR3-231	ENST00000502394	FANCM	Q8IYD8	2048 aa		11.8	□□□□□ -0.52
MATR3-231	ENST00000502394	SDK1	Q7Z5N4	2213 aa		11.79	□□□□□ -0.52
MATR3-231	ENST00000502394		A0A1B0GTL3	188 aa		11.79	□□□□□ -0.52
MATR3-231	ENST00000502394		E7ENX8	843 aa		11.79	□□□□□ -0.52
MATR3-231	ENST00000502394		K7EPI3	171 aa		11.79	□□□□□ -0.52
MATR3-231	ENST00000502394	PPP6C	O00743	305 aa		11.79	□□□□□ -0.52
MATR3-231	ENST00000502394	STK16	O75716	305 aa		11.79	□□□□□ -0.52
MATR3-231	ENST00000502394	PIAS2	O75928	621 aa		11.79	□□□□□ -0.52
MATR3-231	ENST00000502394	GNS	P15586	552 aa		11.79	□□□□□ -0.52
MATR3-231	ENST00000502394	XRCC1	P18887	633 aa	Predicted RBP	11.79	□□□□□ -0.52
MATR3-231	ENST00000502394	EPOR	P19235	508 aa		11.79	□□□□□ -0.52
MATR3-231	ENST00000502394	MPST	P25325	297 aa		11.79	□□□□□ -0.52

Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms