RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 UGT1A4P22310 534 aa15.73■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 AKT1P31749 480 aa15.73■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 UGT1A3P35503 534 aa15.73■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 UGT1A5P35504 534 aa15.73■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 LAPTM5Q13571 262 aa15.73■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 CDKN3Q16667 212 aa15.73■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 SPOUT1Q5T280 376 aaKnown RBP15.73■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 GPRC6AQ5T6X5 926 aa15.73■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 ARMC12Q5T9G4 340 aa15.73■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 BROXQ5VW32 411 aa15.73■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 ZDHHC13Q8IUH4 622 aa15.73■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 RBFAQ8N0V3 343 aa15.73■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 OR52E4Q8NGH9 312 aa15.73■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 WFDC5Q8TCV5 224 aa15.73■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 UBTD2Q8WUN7 234 aa15.73■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 ABTB1Q969K4 478 aaPredicted RBP15.73■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 ACDQ96AP0 544 aa15.73■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 RDH12Q96NR8 316 aa15.73■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 ZBTB18Q99592 522 aa15.73■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 APOL5Q9BWW9 433 aa15.73■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 DPY30Q9C005 99 aa15.73■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 CLMPQ9H6B4 373 aa15.73■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 ASB8Q9H765 288 aa15.73■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 ZFP14Q9HCL3 533 aa15.73■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 IL26Q9NPH9 171 aa15.73■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 SLC6A13Q9NSD5 602 aa15.73■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 TRPM5Q9NZQ8 1165 aa15.73■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 OPTCQ9UBM4 332 aa15.73■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 KLQ9UEF7 1012 aa15.73■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 NIPSNAP3AQ9UFN0 247 aaPredicted RBP15.73■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 STOML2Q9UJZ1 356 aa15.73■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 PCDHGA8Q9Y5G5 932 aa15.73■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 A0A0C4DFX4 3053 aa15.73■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 LOC730098B7Z3J9 87 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 ABCB7O75027 752 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 EFEMP2O95967 443 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 CST1P01037 141 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 PGRP06401 933 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 IL7RP16871 459 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 DGKAP23743 735 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 EEF1B2P24534 225 aaKnown RBP15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 GGT5P36269 586 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 PIGAP37287 484 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 PBX2P40425 430 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 GNPDA1P46926 289 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 RGS4P49798 205 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 NFATC3Q12968 1075 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 NFATC2Q13469 925 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 RBM48Q5RL73 367 aaKnown RBP15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 XKR5Q6UX68 686 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 R3HCC1LQ7Z5L2 792 aaKnown RBP15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 SNX20Q7Z614 316 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 RGL4Q8IZJ4 473 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 OR6K2Q8NGY2 324 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 SLC47A1Q96FL8 570 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 YME1L1Q96TA2 773 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 EGFL8Q99944 293 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 TMEM175Q9BSA9 504 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 TBCDQ9BTW9 1192 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 NTMT1Q9BV86 223 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 ING2Q9H160 280 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 ASIC5Q9NY37 505 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 USE1Q9NZ43 259 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 ZNF490Q9ULM2 529 aaPredicted RBP15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 ELOVL7A1L3X0 281 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 MANBAO00462 879 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 CXCR6O00574 342 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 NOBOXO60393 691 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 GMNNO75496 209 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 PRKD3O94806 890 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 WDR47O94967 919 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 IL6P05231 212 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 PORP16435 677 aaPredicted RBP15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 CSKP41240 450 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 MAPK10P53779 464 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 TMBIM6P55061 237 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 PHC1P78364 1004 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 BNIP3Q12983 259 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 MAD2L1Q13257 205 aaPredicted RBP15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 USP39Q53GS9 565 aaKnown RBP15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 SGO1Q5FBB7 561 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 LAIR2Q6ISS4 152 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 TMEM179BQ7Z7N9 219 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 NPAS4Q8IUM7 802 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 PHACTR4Q8IZ21 702 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 C8orf59Q8N0T1 100 aaPredicted RBP15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 C10orf111Q8N326 155 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 ZBTB2Q8N680 514 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 GLB1L3Q8NCI6 653 aaPredicted RBP15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 USP7Q93009 1102 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 VN1R3Q9BXE9 311 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 TM6SF2Q9BZW4 377 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 LHPPQ9H008 270 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 ACTR8Q9H981 624 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 ZFYVE1Q9HBF4 777 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 LRTM1Q9HBL6 345 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 HPS4Q9NQG7 708 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 WWOXQ9NZC7 414 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 TRPS1Q9UHF7 1281 aa15.72■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 ANGPTL3Q9Y5C1 460 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms