RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 MBOAT1Q6ZNC8 495 aa11.55□□□□□ -0.56
CUX1-210ENST00000497815 FRA10AC1Q70Z53 315 aa11.55□□□□□ -0.56
CUX1-210ENST00000497815 CCDC91Q7Z6B0 441 aa11.55□□□□□ -0.56
CUX1-210ENST00000497815 TAX1BP1Q86VP1 789 aa11.55□□□□□ -0.56
CUX1-210ENST00000497815 AMIGO1Q86WK6 493 aa11.55□□□□□ -0.56
CUX1-210ENST00000497815 PLD6Q8N2A8 252 aaKnown RBP11.55□□□□□ -0.56
CUX1-210ENST00000497815 RIBC1Q8N443 379 aaPredicted RBP11.55□□□□□ -0.56
CUX1-210ENST00000497815 OR9A1PQ8NGU1 263 aa11.55□□□□□ -0.56
CUX1-210ENST00000497815 MCOLN3Q8TDD5 553 aa11.55□□□□□ -0.56
CUX1-210ENST00000497815 PTERQ96BW5 349 aa11.55□□□□□ -0.56
CUX1-210ENST00000497815 SCYL1Q96KG9 808 aa11.55□□□□□ -0.56
CUX1-210ENST00000497815 HIST1H2AHQ96KK5 128 aa11.55□□□□□ -0.56
CUX1-210ENST00000497815 TSNARE1Q96NA8 513 aa11.55□□□□□ -0.56
CUX1-210ENST00000497815 RUFY1Q96T51 708 aa11.55□□□□□ -0.56
CUX1-210ENST00000497815 HIST1H2AJQ99878 128 aa11.55□□□□□ -0.56
CUX1-210ENST00000497815 H2AFJQ9BTM1 129 aa11.55□□□□□ -0.56
CUX1-210ENST00000497815 TMEM109Q9BVC6 243 aa11.55□□□□□ -0.56
CUX1-210ENST00000497815 SLC12A9Q9BXP2 914 aa11.55□□□□□ -0.56
CUX1-210ENST00000497815 TRIM54Q9BYV2 358 aa11.55□□□□□ -0.56
CUX1-210ENST00000497815 LRRN3Q9H3W5 708 aa11.55□□□□□ -0.56
CUX1-210ENST00000497815 TFB2MQ9H5Q4 396 aaKnown RBP11.55□□□□□ -0.56
CUX1-210ENST00000497815 ALG9Q9H6U8 611 aa11.55□□□□□ -0.56
CUX1-210ENST00000497815 RDH14Q9HBH5 336 aa11.55□□□□□ -0.56
CUX1-210ENST00000497815 PARVBQ9HBI1 364 aa11.55□□□□□ -0.56
CUX1-210ENST00000497815 ABCF3Q9NUQ8 709 aa11.55□□□□□ -0.56
CUX1-210ENST00000497815 OGFRQ9NZT2 677 aa11.55□□□□□ -0.56
CUX1-210ENST00000497815 LGALS13Q9UHV8 139 aa11.55□□□□□ -0.56
CUX1-210ENST00000497815 APOBEC2Q9Y235 224 aaKnown RBP11.55□□□□□ -0.56
CUX1-210ENST00000497815 A0A1W2PQM1 296 aa11.54□□□□□ -0.56
CUX1-210ENST00000497815 GSAPA4D1B5 854 aa11.54□□□□□ -0.56
CUX1-210ENST00000497815 NCF1BA6NI72 391 aaPredicted RBP11.54□□□□□ -0.56
CUX1-210ENST00000497815 NCF1CA8MVU1 366 aaPredicted RBP11.54□□□□□ -0.56
CUX1-210ENST00000497815 MYO1CO00159 1063 aa11.54□□□□□ -0.56
CUX1-210ENST00000497815 BTN3A3O00478 584 aa11.54□□□□□ -0.56
CUX1-210ENST00000497815 RGS16O15492 202 aaPredicted RBP11.54□□□□□ -0.56
CUX1-210ENST00000497815 DUX1O43812 170 aa11.54□□□□□ -0.56
CUX1-210ENST00000497815 OPA1O60313 960 aa11.54□□□□□ -0.56
CUX1-210ENST00000497815 NCF1P14598 390 aaPredicted RBP11.54□□□□□ -0.56
CUX1-210ENST00000497815 POLR2CP19387 275 aaPredicted RBP11.54□□□□□ -0.56
CUX1-210ENST00000497815 MPSTP25325 297 aa11.54□□□□□ -0.56
CUX1-210ENST00000497815 CD1CP29017 333 aa11.54□□□□□ -0.56
CUX1-210ENST00000497815 PKLRP30613 574 aa11.54□□□□□ -0.56
CUX1-210ENST00000497815 SLC26A3P40879 764 aa11.54□□□□□ -0.56
CUX1-210ENST00000497815 RAB28P51157 221 aa11.54□□□□□ -0.56
CUX1-210ENST00000497815 GPLD1P80108 840 aa11.54□□□□□ -0.56
CUX1-210ENST00000497815 ILKQ13418 452 aa11.54□□□□□ -0.56
CUX1-210ENST00000497815 ARMC6Q6NXE6 501 aa11.54□□□□□ -0.56
CUX1-210ENST00000497815 IRGCQ6NXR0 463 aa11.54□□□□□ -0.56
CUX1-210ENST00000497815 HDXQ7Z353 690 aa11.54□□□□□ -0.56
CUX1-210ENST00000497815 ADAMTSL2Q86TH1 951 aa11.54□□□□□ -0.56
CUX1-210ENST00000497815 OOSP2Q86WS3 158 aa11.54□□□□□ -0.56
CUX1-210ENST00000497815 GPSM1Q86YR5 675 aa11.54□□□□□ -0.56
CUX1-210ENST00000497815 RASGRP3Q8IV61 690 aa11.54□□□□□ -0.56
CUX1-210ENST00000497815 SRRM1Q8IYB3 904 aaKnown RBP11.54□□□□□ -0.56
CUX1-210ENST00000497815 C4orf33Q8N1A6 199 aa11.54□□□□□ -0.56
CUX1-210ENST00000497815 RAB42Q8N4Z0 105 aa11.54□□□□□ -0.56
CUX1-210ENST00000497815 PPFIBP2Q8ND30 876 aa11.54□□□□□ -0.56
CUX1-210ENST00000497815 CABS1Q96KC9 395 aa11.54□□□□□ -0.56
CUX1-210ENST00000497815 TGM7Q96PF1 710 aa11.54□□□□□ -0.56
CUX1-210ENST00000497815 GFM1Q96RP9 751 aaKnown RBP11.54□□□□□ -0.56
CUX1-210ENST00000497815 EGFL8Q99944 293 aa11.54□□□□□ -0.56
CUX1-210ENST00000497815 NUDT22Q9BRQ3 303 aa11.54□□□□□ -0.56
CUX1-210ENST00000497815 HRASLS2Q9NWW9 162 aa11.54□□□□□ -0.56
CUX1-210ENST00000497815 ARL15Q9NXU5 204 aa11.54□□□□□ -0.56
CUX1-210ENST00000497815 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.54□□□□□ -0.56
CUX1-210ENST00000497815 KLHL3Q9UH77 587 aa11.54□□□□□ -0.56
CUX1-210ENST00000497815 LNPEPQ9UIQ6 1025 aa11.54□□□□□ -0.56
CUX1-210ENST00000497815 RNF112Q9ULX5 631 aa11.54□□□□□ -0.56
CUX1-210ENST00000497815 ASCC3Q8N3C0 2202 aaKnown RBP11.54□□□□□ -0.56
CUX1-210ENST00000497815 GVINP1Q7Z2Y8 2422 aa11.53□□□□□ -0.56
CUX1-210ENST00000497815 OR5K3A6NET4 321 aa11.53□□□□□ -0.56
CUX1-210ENST00000497815 SUPT3HB4E1H0 165 aa11.53□□□□□ -0.56
CUX1-210ENST00000497815 AGRPO00253 132 aa11.53□□□□□ -0.56
CUX1-210ENST00000497815 SUPT3HO75486 399 aa11.53□□□□□ -0.56
CUX1-210ENST00000497815 SLC16A8O95907 504 aa11.53□□□□□ -0.56
CUX1-210ENST00000497815 CHRM5P08912 532 aaPredicted RBP11.53□□□□□ -0.56
CUX1-210ENST00000497815 ENO2P09104 434 aaPredicted RBP11.53□□□□□ -0.56
CUX1-210ENST00000497815 KRT4P19013 534 aa11.53□□□□□ -0.56
CUX1-210ENST00000497815 CSF2RBP32927 897 aa11.53□□□□□ -0.56
CUX1-210ENST00000497815 CAPZBP47756 277 aa11.53□□□□□ -0.56
CUX1-210ENST00000497815 KCNC1P48547 511 aa11.53□□□□□ -0.56
CUX1-210ENST00000497815 GFERP55789 205 aa11.53□□□□□ -0.56
CUX1-210ENST00000497815 PPP1CAP62136 330 aa11.53□□□□□ -0.56
CUX1-210ENST00000497815 E2F1Q01094 437 aa11.53□□□□□ -0.56
CUX1-210ENST00000497815 CFHR1Q03591 330 aa11.53□□□□□ -0.56
CUX1-210ENST00000497815 PRKAA1Q13131 559 aa11.53□□□□□ -0.56
CUX1-210ENST00000497815 SPIDRQ14159 915 aa11.53□□□□□ -0.56
CUX1-210ENST00000497815 FASTKQ14296 549 aaKnown RBP11.53□□□□□ -0.56
CUX1-210ENST00000497815 PPP1R3AQ16821 1122 aa11.53□□□□□ -0.56
CUX1-210ENST00000497815 TSNAXIP1Q2TAA8 658 aa11.53□□□□□ -0.56
CUX1-210ENST00000497815 SNAP47Q5SQN1 464 aa11.53□□□□□ -0.56
CUX1-210ENST00000497815 C16orf46Q6P387 395 aa11.53□□□□□ -0.56
CUX1-210ENST00000497815 KLHL35Q6PF15 583 aa11.53□□□□□ -0.56
CUX1-210ENST00000497815 CLEC14AQ86T13 490 aa11.53□□□□□ -0.56
CUX1-210ENST00000497815 ISCA2Q86U28 154 aa11.53□□□□□ -0.56
CUX1-210ENST00000497815 TRABD2AQ86V40 505 aa11.53□□□□□ -0.56
CUX1-210ENST00000497815 SYTL1Q8IYJ3 562 aa11.53□□□□□ -0.56
CUX1-210ENST00000497815 ADGRF3Q8IZF5 1079 aa11.53□□□□□ -0.56
CUX1-210ENST00000497815 CNPY4Q8N129 248 aa11.53□□□□□ -0.56
CUX1-210ENST00000497815 LINC01555Q8NAE3 123 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms