RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, human

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B1-212	ENST00000496458	HPSE2	Q8WWQ2	592 aa		4.99	□□□□□ -1.61
SF3B1-212	ENST00000496458	NSUN4	Q96CB9	384 aa	Known RBP	4.99	□□□□□ -1.61
SF3B1-212	ENST00000496458	POM121L2	Q96KW2	1035 aa		4.99	□□□□□ -1.61
SF3B1-212	ENST00000496458	BTBD10	Q9BSF8	475 aa		4.99	□□□□□ -1.61
SF3B1-212	ENST00000496458	MMP27	Q9H306	513 aa		4.99	□□□□□ -1.61
SF3B1-212	ENST00000496458	SDR39U1	Q9NRG7	319 aa	Predicted RBP	4.99	□□□□□ -1.61
SF3B1-212	ENST00000496458	RNF215	Q9Y6U7	377 aa		4.99	□□□□□ -1.61
SF3B1-212	ENST00000496458		A0A1W2PRQ8	180 aa		4.98	□□□□□ -1.61
SF3B1-212	ENST00000496458	ANKRD18B	A2A2Z9	1011 aa		4.98	□□□□□ -1.61
SF3B1-212	ENST00000496458	ANKUB1	A6NFN9	424 aa		4.98	□□□□□ -1.61
SF3B1-212	ENST00000496458	ERI2	A8K979	691 aa	Known RBP	4.98	□□□□□ -1.61
SF3B1-212	ENST00000496458	OR10H2	O60403	315 aa		4.98	□□□□□ -1.61
SF3B1-212	ENST00000496458	KRT5	P13647	590 aa		4.98	□□□□□ -1.61
SF3B1-212	ENST00000496458	CEBPB	P17676	345 aa		4.98	□□□□□ -1.61
SF3B1-212	ENST00000496458	ALOX12	P18054	663 aa		4.98	□□□□□ -1.61
SF3B1-212	ENST00000496458	SAT1	P21673	171 aa		4.98	□□□□□ -1.61
SF3B1-212	ENST00000496458	SLC6A6	P31641	620 aa		4.98	□□□□□ -1.61
SF3B1-212	ENST00000496458	CLNS1A	P54105	237 aa	Known RBP	4.98	□□□□□ -1.61
SF3B1-212	ENST00000496458	NUCB1	Q02818	461 aa		4.98	□□□□□ -1.61
SF3B1-212	ENST00000496458	PCLAF	Q15004	111 aa		4.98	□□□□□ -1.61
SF3B1-212	ENST00000496458	TMEM211	Q6ICI0	200 aa		4.98	□□□□□ -1.61
SF3B1-212	ENST00000496458	STXBP4	Q6ZWJ1	553 aa		4.98	□□□□□ -1.61
SF3B1-212	ENST00000496458	TMEM173	Q86WV6	379 aa	Predicted RBP	4.98	□□□□□ -1.61
SF3B1-212	ENST00000496458	TTC30B	Q8N4P2	665 aa		4.98	□□□□□ -1.61
SF3B1-212	ENST00000496458	PTPMT1	Q8WUK0	201 aa	Predicted RBP	4.98	□□□□□ -1.61
SF3B1-212	ENST00000496458	IRGQ	Q8WZA9	623 aa		4.98	□□□□□ -1.61
SF3B1-212	ENST00000496458	LPGAT1	Q92604	370 aa		4.98	□□□□□ -1.61
SF3B1-212	ENST00000496458	ZNF689	Q96CS4	500 aa	Predicted RBP	4.98	□□□□□ -1.61
SF3B1-212	ENST00000496458	OLFM1	Q99784	485 aa		4.98	□□□□□ -1.61
SF3B1-212	ENST00000496458	NUP85	Q9BW27	656 aa		4.98	□□□□□ -1.61
SF3B1-212	ENST00000496458	TEX12	Q9BXU0	123 aa		4.98	□□□□□ -1.61
SF3B1-212	ENST00000496458	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	4.98	□□□□□ -1.61
SF3B1-212	ENST00000496458	EXOG	Q9Y2C4	368 aa	Known RBP	4.98	□□□□□ -1.61
SF3B1-212	ENST00000496458	PRSS21	Q9Y6M0	314 aa		4.98	□□□□□ -1.61
SF3B1-212	ENST00000496458	KIF21A	Q7Z4S6	1674 aa		4.98	□□□□□ -1.61
SF3B1-212	ENST00000496458	ZNF541	Q9H0D2	1346 aa		4.97	□□□□□ -1.61
SF3B1-212	ENST00000496458	CFTR	P13569	1480 aa		4.97	□□□□□ -1.61
SF3B1-212	ENST00000496458	LOC102723996	A0A087X1L8	192 aa		4.97	□□□□□ -1.61
SF3B1-212	ENST00000496458	GPR75-ASB3	A0A0A6YYF3	556 aa		4.97	□□□□□ -1.61
SF3B1-212	ENST00000496458		K7ENM7	598 aa		4.97	□□□□□ -1.61
SF3B1-212	ENST00000496458	TSPAN1	O60635	241 aa		4.97	□□□□□ -1.61
SF3B1-212	ENST00000496458	ENTPD3	O75355	529 aa		4.97	□□□□□ -1.61
SF3B1-212	ENST00000496458	WDPCP	O95876	746 aa		4.97	□□□□□ -1.61
SF3B1-212	ENST00000496458	TYMP	P19971	482 aa		4.97	□□□□□ -1.61
SF3B1-212	ENST00000496458	MATR3	P43243	847 aa	Known RBP eCLIP	4.97	□□□□□ -1.61
SF3B1-212	ENST00000496458	STAT2	P52630	851 aa		4.97	□□□□□ -1.61
SF3B1-212	ENST00000496458	EPS8	Q12929	822 aa		4.97	□□□□□ -1.61
SF3B1-212	ENST00000496458	GRAP	Q13588	217 aa		4.97	□□□□□ -1.61
SF3B1-212	ENST00000496458	CUL4A	Q13619	759 aa		4.97	□□□□□ -1.61
SF3B1-212	ENST00000496458	TEAD2	Q15562	447 aa		4.97	□□□□□ -1.61
SF3B1-212	ENST00000496458	PHLDA2	Q53GA4	152 aa		4.97	□□□□□ -1.61
SF3B1-212	ENST00000496458	GET4	Q7L5D6	327 aa	Predicted RBP	4.97	□□□□□ -1.61
SF3B1-212	ENST00000496458	CREBRF	Q8IUR6	639 aa		4.97	□□□□□ -1.61
SF3B1-212	ENST00000496458	TMEM139	Q8IV31	216 aa		4.97	□□□□□ -1.61
SF3B1-212	ENST00000496458	MAGED4	Q96JG8	741 aa		4.97	□□□□□ -1.61
SF3B1-212	ENST00000496458	FNBP1	Q96RU3	617 aa		4.97	□□□□□ -1.61
SF3B1-212	ENST00000496458	P2RY12	Q9H244	342 aa		4.97	□□□□□ -1.61
SF3B1-212	ENST00000496458	ZNF701	Q9NV72	531 aa	Predicted RBP	4.97	□□□□□ -1.61
SF3B1-212	ENST00000496458	B3GAT1	Q9P2W7	334 aa		4.97	□□□□□ -1.61
SF3B1-212	ENST00000496458	CACNG4	Q9UBN1	327 aa		4.97	□□□□□ -1.61
SF3B1-212	ENST00000496458	GPR34	Q9UPC5	381 aa		4.97	□□□□□ -1.61
SF3B1-212	ENST00000496458	WBP11	Q9Y2W2	641 aa	Known RBP	4.97	□□□□□ -1.61
SF3B1-212	ENST00000496458	MMP24	Q9Y5R2	645 aa		4.97	□□□□□ -1.61
SF3B1-212	ENST00000496458	LOC100509620	A0A075B734	347 aa		4.96	□□□□□ -1.62
SF3B1-212	ENST00000496458	IGKV3D-20	A0A0C4DH25	116 aa		4.96	□□□□□ -1.62
SF3B1-212	ENST00000496458		A0A0J9YWU9	116 aa		4.96	□□□□□ -1.62
SF3B1-212	ENST00000496458	KRTAP16-1	A8MUX0	517 aa		4.96	□□□□□ -1.62
SF3B1-212	ENST00000496458	RNASEH1	O60930	286 aa	Known RBP	4.96	□□□□□ -1.62
SF3B1-212	ENST00000496458	ZFAND5	O76080	213 aa		4.96	□□□□□ -1.62
SF3B1-212	ENST00000496458	GPI	P06744	558 aa		4.96	□□□□□ -1.62
SF3B1-212	ENST00000496458	POR	P16435	677 aa	Predicted RBP	4.96	□□□□□ -1.62
SF3B1-212	ENST00000496458	DPEP1	P16444	411 aa		4.96	□□□□□ -1.62
SF3B1-212	ENST00000496458	CA6	P23280	308 aa		4.96	□□□□□ -1.62
SF3B1-212	ENST00000496458	NTRK2	Q16620	822 aa		4.96	□□□□□ -1.62
SF3B1-212	ENST00000496458	C15orf59	Q2T9L4	293 aa	Predicted RBP	4.96	□□□□□ -1.62
SF3B1-212	ENST00000496458	PSRC1	Q6PGN9	363 aa	Predicted RBP	4.96	□□□□□ -1.62
SF3B1-212	ENST00000496458	GUF1	Q8N442	669 aa	Known RBP	4.96	□□□□□ -1.62
SF3B1-212	ENST00000496458	RAB42	Q8N4Z0	105 aa		4.96	□□□□□ -1.62
SF3B1-212	ENST00000496458	JAKMIP2	Q96AA8	810 aa		4.96	□□□□□ -1.62
SF3B1-212	ENST00000496458	MCRIP2	Q9BUT9	160 aa	Known RBP	4.96	□□□□□ -1.62
SF3B1-212	ENST00000496458	TAB2	Q9NYJ8	693 aa		4.96	□□□□□ -1.62
SF3B1-212	ENST00000496458	PCDHGB4	Q9UN71	923 aa		4.96	□□□□□ -1.62
SF3B1-212	ENST00000496458	FANCD2	Q9BXW9	1451 aa		4.95	□□□□□ -1.62
SF3B1-212	ENST00000496458		A8MV72	311 aa	Predicted RBP	4.95	□□□□□ -1.62
SF3B1-212	ENST00000496458	KLF11	O14901	512 aa		4.95	□□□□□ -1.62
SF3B1-212	ENST00000496458	RPN1	P04843	607 aa	Known RBP	4.95	□□□□□ -1.62
SF3B1-212	ENST00000496458	OR2T7	P0C7T2	308 aa		4.95	□□□□□ -1.62
SF3B1-212	ENST00000496458	DNASE1	P24855	282 aa		4.95	□□□□□ -1.62
SF3B1-212	ENST00000496458	CDC37	Q16543	378 aa	Predicted RBP	4.95	□□□□□ -1.62
SF3B1-212	ENST00000496458	ITPRIPL2	Q3MIP1	535 aa		4.95	□□□□□ -1.62
SF3B1-212	ENST00000496458	ELFN2	Q5R3F8	820 aa		4.95	□□□□□ -1.62
SF3B1-212	ENST00000496458	BRINP3	Q76B58	766 aa		4.95	□□□□□ -1.62
SF3B1-212	ENST00000496458	CDK20	Q8IZL9	346 aa		4.95	□□□□□ -1.62
SF3B1-212	ENST00000496458	OR8H2	Q8N162	312 aa		4.95	□□□□□ -1.62
SF3B1-212	ENST00000496458	ZNF614	Q8N883	585 aa		4.95	□□□□□ -1.62
SF3B1-212	ENST00000496458	NPEPL1	Q8NDH3	523 aa		4.95	□□□□□ -1.62
SF3B1-212	ENST00000496458	APPL2	Q8NEU8	664 aa		4.95	□□□□□ -1.62
SF3B1-212	ENST00000496458	CCDC107	Q8WV48	283 aa		4.95	□□□□□ -1.62
SF3B1-212	ENST00000496458	DYRK2	Q92630	601 aa		4.95	□□□□□ -1.62
SF3B1-212	ENST00000496458	SLC22A18	Q96BI1	424 aa		4.95	□□□□□ -1.62

Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms