RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-213ENST00000488520 CALML6Q8TD86 181 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 DTX3LQ8TDB6 740 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 KIAA1143Q96AT1 154 aaPredicted RBP8.55□□□□□ -1.04
USP4-213ENST00000488520 CFAP36Q96G28 342 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 AHCYL2Q96HN2 611 aaKnown RBP8.55□□□□□ -1.04
USP4-213ENST00000488520 SLC45A3Q96JT2 553 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 DNAJC1Q96KC8 554 aaKnown RBP8.55□□□□□ -1.04
USP4-213ENST00000488520 SIGLEC10Q96LC7 697 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 PSMG3-AS1Q96PY0 264 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 KIFC1Q9BW19 673 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 DDA1Q9BW61 102 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 ASPSCR1Q9BZE9 553 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 IL26Q9NPH9 171 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 C20orf96Q9NUD7 363 aaPredicted RBP8.55□□□□□ -1.04
USP4-213ENST00000488520 KCNK4Q9NYG8 393 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 PILRAQ9UKJ1 303 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 TP53TG5Q9Y2B4 290 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 KCTD3Q9Y597 815 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 MRPS18BQ9Y676 258 aaKnown RBP8.55□□□□□ -1.04
USP4-213ENST00000488520 TEP1Q99973 2627 aaKnown RBP8.54□□□□□ -1.04
USP4-213ENST00000488520 PRR19A6NJB7 356 aa8.54□□□□□ -1.04
USP4-213ENST00000488520 K7EM74 188 aa8.54□□□□□ -1.04
USP4-213ENST00000488520 CD3EAPO15446 510 aaKnown RBP8.54□□□□□ -1.04
USP4-213ENST00000488520 UGT1A9O60656 530 aa8.54□□□□□ -1.04
USP4-213ENST00000488520 NDUFS3O75489 264 aa8.54□□□□□ -1.04
USP4-213ENST00000488520 USP1O94782 785 aa8.54□□□□□ -1.04
USP4-213ENST00000488520 CDK14O94921 469 aa8.54□□□□□ -1.04
USP4-213ENST00000488520 VAPBO95292 243 aa8.54□□□□□ -1.04
USP4-213ENST00000488520 PRAMEF1O95521 474 aa8.54□□□□□ -1.04
USP4-213ENST00000488520 UGT1A6P19224 532 aa8.54□□□□□ -1.04
USP4-213ENST00000488520 TCN2P20062 427 aa8.54□□□□□ -1.04
USP4-213ENST00000488520 UGT1A1P22309 533 aa8.54□□□□□ -1.04
USP4-213ENST00000488520 UGT1A4P22310 534 aa8.54□□□□□ -1.04
USP4-213ENST00000488520 NMBRP28336 390 aa8.54□□□□□ -1.04
USP4-213ENST00000488520 ACTR1BP42025 376 aa8.54□□□□□ -1.04
USP4-213ENST00000488520 MAGEA4P43358 317 aa8.54□□□□□ -1.04
USP4-213ENST00000488520 CARSP49589 748 aaKnown RBP8.54□□□□□ -1.04
USP4-213ENST00000488520 ACTR1AP61163 376 aa8.54□□□□□ -1.04
USP4-213ENST00000488520 MSLNQ13421 630 aaPredicted RBP8.54□□□□□ -1.04
USP4-213ENST00000488520 PEX6Q13608 980 aa8.54□□□□□ -1.04
USP4-213ENST00000488520 LONRF1Q17RB8 773 aa8.54□□□□□ -1.04
USP4-213ENST00000488520 ANKRD20A4Q4UJ75 823 aa8.54□□□□□ -1.04
USP4-213ENST00000488520 LACTB2Q53H82 288 aaPredicted RBP8.54□□□□□ -1.04
USP4-213ENST00000488520 HENMT1Q5T8I9 393 aaKnown RBP8.54□□□□□ -1.04
USP4-213ENST00000488520 TMEM71Q6P5X7 295 aa8.54□□□□□ -1.04
USP4-213ENST00000488520 CES3Q6UWW8 571 aa8.54□□□□□ -1.04
USP4-213ENST00000488520 ADAMTSL4Q6UY14 1074 aa8.54□□□□□ -1.04
USP4-213ENST00000488520 RFLNAQ6ZTI6 216 aa8.54□□□□□ -1.04
USP4-213ENST00000488520 C3orf62Q6ZUJ4 267 aa8.54□□□□□ -1.04
USP4-213ENST00000488520 MARK2Q7KZI7 788 aaKnown RBP8.54□□□□□ -1.04
USP4-213ENST00000488520 TIPARPQ7Z3E1 657 aaKnown RBP8.54□□□□□ -1.04
USP4-213ENST00000488520 LMNTD2Q8IXW0 634 aa8.54□□□□□ -1.04
USP4-213ENST00000488520 NLGN4XQ8N0W4 816 aa8.54□□□□□ -1.04
USP4-213ENST00000488520 FBXO36Q8NEA4 188 aa8.54□□□□□ -1.04
USP4-213ENST00000488520 NLGN4YQ8NFZ3 816 aaPredicted RBP8.54□□□□□ -1.04
USP4-213ENST00000488520 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP8.54□□□□□ -1.04
USP4-213ENST00000488520 CDKL2Q92772 493 aa8.54□□□□□ -1.04
USP4-213ENST00000488520 GLYATL1Q969I3 302 aa8.54□□□□□ -1.04
USP4-213ENST00000488520 MIB2Q96AX9 1013 aa8.54□□□□□ -1.04
USP4-213ENST00000488520 ZNF669Q96BR6 464 aaPredicted RBP8.54□□□□□ -1.04
USP4-213ENST00000488520 EID2BQ96D98 161 aa8.54□□□□□ -1.04
USP4-213ENST00000488520 FMO2Q99518 471 aa8.54□□□□□ -1.04
USP4-213ENST00000488520 COPS8Q99627 209 aa8.54□□□□□ -1.04
USP4-213ENST00000488520 TSSK1BQ9BXA7 367 aa8.54□□□□□ -1.04
USP4-213ENST00000488520 FAM96AQ9H5X1 160 aa8.54□□□□□ -1.04
USP4-213ENST00000488520 UGT1A7Q9HAW7 530 aa8.54□□□□□ -1.04
USP4-213ENST00000488520 UGT1A10Q9HAW8 530 aa8.54□□□□□ -1.04
USP4-213ENST00000488520 UGT1A8Q9HAW9 530 aa8.54□□□□□ -1.04
USP4-213ENST00000488520 TRIM39Q9HCM9 518 aa8.54□□□□□ -1.04
USP4-213ENST00000488520 APMAPQ9HDC9 416 aa8.54□□□□□ -1.04
USP4-213ENST00000488520 CATSPERZQ9NTU4 200 aa8.54□□□□□ -1.04
USP4-213ENST00000488520 TRNAU1APQ9NX07 287 aaKnown RBP8.54□□□□□ -1.04
USP4-213ENST00000488520 GRHL1Q9NZI5 618 aa8.54□□□□□ -1.04
USP4-213ENST00000488520 TXNDC16Q9P2K2 825 aa8.54□□□□□ -1.04
USP4-213ENST00000488520 KLHL3Q9UH77 587 aa8.54□□□□□ -1.04
USP4-213ENST00000488520 ZNHIT2Q9UHR6 403 aa8.54□□□□□ -1.04
USP4-213ENST00000488520 NFU1Q9UMS0 254 aa8.54□□□□□ -1.04
USP4-213ENST00000488520 CHMP2BQ9UQN3 213 aa8.54□□□□□ -1.04
USP4-213ENST00000488520 DIDO1Q9BTC0 2240 aaKnown RBP8.54□□□□□ -1.04
USP4-213ENST00000488520 ZGRF1Q86YA3 2104 aa8.54□□□□□ -1.04
USP4-213ENST00000488520 CELSR2Q9HCU4 2923 aa8.53□□□□□ -1.04
USP4-213ENST00000488520 CCDC162PA2VCL2 907 aa8.53□□□□□ -1.04
USP4-213ENST00000488520 H7C0S8 307 aa8.53□□□□□ -1.04
USP4-213ENST00000488520 VEGFDO43915 354 aa8.53□□□□□ -1.04
USP4-213ENST00000488520 ICMTO60725 284 aa8.53□□□□□ -1.04
USP4-213ENST00000488520 GOT2P00505 430 aaKnown RBP8.53□□□□□ -1.04
USP4-213ENST00000488520 GSTA2P09210 222 aa8.53□□□□□ -1.04
USP4-213ENST00000488520 ZNF7P17097 686 aaPredicted RBP8.53□□□□□ -1.04
USP4-213ENST00000488520 VCLP18206 1134 aa8.53□□□□□ -1.04
USP4-213ENST00000488520 MAP4P27816 1152 aaKnown RBP8.53□□□□□ -1.04
USP4-213ENST00000488520 MAPK9P45984 424 aa8.53□□□□□ -1.04
USP4-213ENST00000488520 UQCRFS1P47985 274 aa8.53□□□□□ -1.04
USP4-213ENST00000488520 TTPAP49638 278 aa8.53□□□□□ -1.04
USP4-213ENST00000488520 ZNF140P52738 457 aaPredicted RBP8.53□□□□□ -1.04
USP4-213ENST00000488520 CDK3Q00526 305 aa8.53□□□□□ -1.04
USP4-213ENST00000488520 TMEM115Q12893 351 aaPredicted RBP8.53□□□□□ -1.04
USP4-213ENST00000488520 KLRB1Q12918 225 aa8.53□□□□□ -1.04
USP4-213ENST00000488520 NFATC2Q13469 925 aa8.53□□□□□ -1.04
USP4-213ENST00000488520 TRADDQ15628 312 aa8.53□□□□□ -1.04
USP4-213ENST00000488520 CLPPQ16740 277 aaPredicted RBP8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms