RNA–Protein interactions for RNA: ENST00000486023.1

COL6A1-204, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 2

Gene COL6A1, Length 968 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-204ENST00000486023 E5RI56 91 aa17.06■□□□□ 0.32
COL6A1-204ENST00000486023 KPNA5O15131 536 aa17.06■□□□□ 0.32
COL6A1-204ENST00000486023 MLNP12872 115 aa17.06■□□□□ 0.32
COL6A1-204ENST00000486023 BDKRB1P46663 353 aa17.06■□□□□ 0.32
COL6A1-204ENST00000486023 FNTAP49354 379 aa17.06■□□□□ 0.32
COL6A1-204ENST00000486023 POLE2P56282 527 aa17.06■□□□□ 0.32
COL6A1-204ENST00000486023 RPS15P62841 145 aaKnown RBP17.06■□□□□ 0.32
COL6A1-204ENST00000486023 GPS2Q13227 327 aa17.06■□□□□ 0.32
COL6A1-204ENST00000486023 CTBP1Q13363 440 aa17.06■□□□□ 0.32
COL6A1-204ENST00000486023 RNF187Q5TA31 235 aaPredicted RBP17.06■□□□□ 0.32
COL6A1-204ENST00000486023 ZNF470Q6ECI4 717 aa17.06■□□□□ 0.32
COL6A1-204ENST00000486023 KIAA0930Q6ICG6 404 aaPredicted RBP17.06■□□□□ 0.32
COL6A1-204ENST00000486023 PRICKLE2Q7Z3G6 844 aa17.06■□□□□ 0.32
COL6A1-204ENST00000486023 TMEM135Q86UB9 458 aa17.06■□□□□ 0.32
COL6A1-204ENST00000486023 C19orf47Q8N9M1 422 aaKnown RBP17.06■□□□□ 0.32
COL6A1-204ENST00000486023 MCUQ8NE86 351 aa17.06■□□□□ 0.32
COL6A1-204ENST00000486023 OR8K5Q8NH50 307 aa17.06■□□□□ 0.32
COL6A1-204ENST00000486023 LPGAT1Q92604 370 aa17.06■□□□□ 0.32
COL6A1-204ENST00000486023 PITPNM3Q9BZ71 974 aa17.06■□□□□ 0.32
COL6A1-204ENST00000486023 ACTR5Q9H9F9 607 aaPredicted RBP17.06■□□□□ 0.32
COL6A1-204ENST00000486023 FAM60AQ9NP50 221 aa17.06■□□□□ 0.32
COL6A1-204ENST00000486023 FBXO6Q9NRD1 293 aaPredicted RBP17.06■□□□□ 0.32
COL6A1-204ENST00000486023 C20orf96Q9NUD7 363 aaPredicted RBP17.06■□□□□ 0.32
COL6A1-204ENST00000486023 GALPQ9UBC7 116 aa17.06■□□□□ 0.32
COL6A1-204ENST00000486023 PYCARDQ9ULZ3 195 aa17.06■□□□□ 0.32
COL6A1-204ENST00000486023 HEMK1Q9Y5R4 338 aaPredicted RBP17.06■□□□□ 0.32
COL6A1-204ENST00000486023 A0A0J9YY10 115 aa17.05■□□□□ 0.32
COL6A1-204ENST00000486023 FAM237BA0A1B0GVD1 139 aa17.05■□□□□ 0.32
COL6A1-204ENST00000486023 KRT87PA6NCN2 255 aa17.05■□□□□ 0.32
COL6A1-204ENST00000486023 B8ZZF3 427 aa17.05■□□□□ 0.32
COL6A1-204ENST00000486023 E7EQ34 232 aa17.05■□□□□ 0.32
COL6A1-204ENST00000486023 PYCARD-AS1I3L0S3 204 aa17.05■□□□□ 0.32
COL6A1-204ENST00000486023 SLCO2B1O94956 709 aa17.05■□□□□ 0.32
COL6A1-204ENST00000486023 FURINP09958 794 aa17.05■□□□□ 0.32
COL6A1-204ENST00000486023 TCP1P17987 556 aaKnown RBP17.05■□□□□ 0.32
COL6A1-204ENST00000486023 RPS3P23396 243 aaKnown RBP eCLIP17.05■□□□□ 0.32
COL6A1-204ENST00000486023 RAB28P51157 221 aa17.05■□□□□ 0.32
COL6A1-204ENST00000486023 ZIC1Q15915 447 aa17.05■□□□□ 0.32
COL6A1-204ENST00000486023 KYNUQ16719 465 aa17.05■□□□□ 0.32
COL6A1-204ENST00000486023 ZNF789Q5FWF6 425 aa17.05■□□□□ 0.32
COL6A1-204ENST00000486023 UNC5DQ6UXZ4 953 aa17.05■□□□□ 0.32
COL6A1-204ENST00000486023 PTRH1Q86Y79 214 aaKnown RBP17.05■□□□□ 0.32
COL6A1-204ENST00000486023 SPNS2Q8IVW8 549 aa17.05■□□□□ 0.32
COL6A1-204ENST00000486023 DCUN1D3Q8IWE4 304 aa17.05■□□□□ 0.32
COL6A1-204ENST00000486023 DENND6AQ8IWF6 608 aa17.05■□□□□ 0.32
COL6A1-204ENST00000486023 PPIL6Q8IXY8 311 aa17.05■□□□□ 0.32
COL6A1-204ENST00000486023 GPR135Q8IZ08 494 aa17.05■□□□□ 0.32
COL6A1-204ENST00000486023 NAT8LQ8N9F0 302 aa17.05■□□□□ 0.32
COL6A1-204ENST00000486023 FOPNLQ96NB1 174 aa17.05■□□□□ 0.32
COL6A1-204ENST00000486023 BIRC8Q96P09 236 aa17.05■□□□□ 0.32
COL6A1-204ENST00000486023 TCF12Q99081 682 aa17.05■□□□□ 0.32
COL6A1-204ENST00000486023 SPRTNQ9H040 489 aaPredicted RBP17.05■□□□□ 0.32
COL6A1-204ENST00000486023 CHST8Q9H2A9 424 aa17.05■□□□□ 0.32
COL6A1-204ENST00000486023 ACTL8Q9H568 366 aa17.05■□□□□ 0.32
COL6A1-204ENST00000486023 MEN1O00255 615 aa17.04■□□□□ 0.32
COL6A1-204ENST00000486023 CES2O00748 559 aa17.04■□□□□ 0.32
COL6A1-204ENST00000486023 ZNF749O43361 778 aa17.04■□□□□ 0.32
COL6A1-204ENST00000486023 BANF1O75531 89 aa17.04■□□□□ 0.32
COL6A1-204ENST00000486023 CREG1O75629 220 aa17.04■□□□□ 0.32
COL6A1-204ENST00000486023 OR2B3O76000 313 aa17.04■□□□□ 0.32
COL6A1-204ENST00000486023 SFTPCP11686 197 aa17.04■□□□□ 0.32
COL6A1-204ENST00000486023 PKMP14618 531 aaKnown RBP17.04■□□□□ 0.32
COL6A1-204ENST00000486023 CD9P21926 228 aa17.04■□□□□ 0.32
COL6A1-204ENST00000486023 PEBP1P30086 187 aaKnown RBP17.04■□□□□ 0.32
COL6A1-204ENST00000486023 PKLRP30613 574 aa17.04■□□□□ 0.32
COL6A1-204ENST00000486023 ITGA1P56199 1179 aa17.04■□□□□ 0.32
COL6A1-204ENST00000486023 KCNAB2Q13303 367 aa17.04■□□□□ 0.32
COL6A1-204ENST00000486023 KIR2DS3Q14952 304 aa17.04■□□□□ 0.32
COL6A1-204ENST00000486023 SF1Q15637 639 aaKnown RBP17.04■□□□□ 0.32
COL6A1-204ENST00000486023 TYSND1Q2T9J0 566 aa17.04■□□□□ 0.32
COL6A1-204ENST00000486023 PTCHD3Q3KNS1 767 aa17.04■□□□□ 0.32
COL6A1-204ENST00000486023 CCSMST1Q4G0I0 132 aa17.04■□□□□ 0.32
COL6A1-204ENST00000486023 PLEKHS1Q5SXH7 462 aa17.04■□□□□ 0.32
COL6A1-204ENST00000486023 C1orf189Q5VU69 101 aa17.04■□□□□ 0.32
COL6A1-204ENST00000486023 FAM69BQ5VUD6 431 aa17.04■□□□□ 0.32
COL6A1-204ENST00000486023 LCN10Q6JVE6 187 aa17.04■□□□□ 0.32
COL6A1-204ENST00000486023 CENPUQ71F23 418 aa17.04■□□□□ 0.32
COL6A1-204ENST00000486023 CILP2Q8IUL8 1156 aa17.04■□□□□ 0.32
COL6A1-204ENST00000486023 LINC01555Q8NAE3 123 aa17.04■□□□□ 0.32
COL6A1-204ENST00000486023 APOBEC4Q8WW27 367 aaKnown RBP17.04■□□□□ 0.32
COL6A1-204ENST00000486023 TCTN2Q96GX1 697 aa17.04■□□□□ 0.32
COL6A1-204ENST00000486023 SYTL2Q9HCH5 934 aa17.04■□□□□ 0.32
COL6A1-204ENST00000486023 ZNF71Q9NQZ8 489 aaPredicted RBP17.04■□□□□ 0.32
COL6A1-204ENST00000486023 GEMIN8Q9NWZ8 242 aaKnown RBP17.04■□□□□ 0.32
COL6A1-204ENST00000486023 FARSAQ9Y285 508 aaKnown RBP17.04■□□□□ 0.32
COL6A1-204ENST00000486023 ZNF462Q96JM2 2506 aa17.04■□□□□ 0.32
COL6A1-204ENST00000486023 GCN1Q92616 2671 aaKnown RBP17.03■□□□□ 0.32
COL6A1-204ENST00000486023 C21orf140B9A014 251 aa17.03■□□□□ 0.32
COL6A1-204ENST00000486023 H3BMM5 538 aa17.03■□□□□ 0.32
COL6A1-204ENST00000486023 HCRTR1O43613 425 aa17.03■□□□□ 0.32
COL6A1-204ENST00000486023 SLC28A2O43868 658 aa17.03■□□□□ 0.32
COL6A1-204ENST00000486023 ESR1P03372 595 aa17.03■□□□□ 0.32
COL6A1-204ENST00000486023 CTSBP07858 339 aa17.03■□□□□ 0.32
COL6A1-204ENST00000486023 OGNP20774 298 aaKnown RBP17.03■□□□□ 0.32
COL6A1-204ENST00000486023 GRIA3P42263 894 aa17.03■□□□□ 0.32
COL6A1-204ENST00000486023 TSTA3Q13630 321 aaPredicted RBP17.03■□□□□ 0.32
COL6A1-204ENST00000486023 GRB7Q14451 532 aa17.03■□□□□ 0.32
COL6A1-204ENST00000486023 LONRF1Q17RB8 773 aa17.03■□□□□ 0.32
COL6A1-204ENST00000486023 HP1BP3Q5SSJ5 553 aaPredicted RBP17.03■□□□□ 0.32
COL6A1-204ENST00000486023 AGGF1Q8N302 714 aaeCLIP17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms