RNA–Protein interactions for RNA: ENST00000477334.1

RBM39-231, Transcript of RNA binding motif protein 39, human

TSL 2

Gene RBM39, Length 949 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-231	ENST00000477334	RABEP2	Q9H5N1	569 aa		3.88	□□□□□ -1.79
RBM39-231	ENST00000477334	SIX2	Q9NPC8	291 aa		3.88	□□□□□ -1.79
RBM39-231	ENST00000477334	CCDC177	Q9NQR7	707 aa	Predicted RBP	3.88	□□□□□ -1.79
RBM39-231	ENST00000477334	DAPK2	Q9UIK4	370 aa		3.88	□□□□□ -1.79
RBM39-231	ENST00000477334	ABT1	Q9ULW3	272 aa	Known RBP	3.88	□□□□□ -1.79
RBM39-231	ENST00000477334	PCDH11Y	Q9BZA8	1340 aa		3.88	□□□□□ -1.79
RBM39-231	ENST00000477334	BLOC1S5-TXNDC5	H3BN57	136 aa		3.87	□□□□□ -1.79
RBM39-231	ENST00000477334	PCDH7	O60245	1069 aa		3.87	□□□□□ -1.79
RBM39-231	ENST00000477334	NGF	P01138	241 aa		3.87	□□□□□ -1.79
RBM39-231	ENST00000477334	CD48	P09326	243 aa		3.87	□□□□□ -1.79
RBM39-231	ENST00000477334	FRMD6-AS1	P0C7T7	363 aa		3.87	□□□□□ -1.79
RBM39-231	ENST00000477334	ERVK-10	P10266	1014 aa		3.87	□□□□□ -1.79
RBM39-231	ENST00000477334	HSPA8	P11142	646 aa	Known RBP	3.87	□□□□□ -1.79
RBM39-231	ENST00000477334	CYP11B2	P19099	503 aa		3.87	□□□□□ -1.79
RBM39-231	ENST00000477334	AZGP1	P25311	298 aa	Known RBP	3.87	□□□□□ -1.79
RBM39-231	ENST00000477334	EEF1D	P29692	281 aa	Known RBP	3.87	□□□□□ -1.79
RBM39-231	ENST00000477334	CEACAM8	P31997	349 aa	Predicted RBP	3.87	□□□□□ -1.79
RBM39-231	ENST00000477334	CAMK2D	Q13557	499 aa		3.87	□□□□□ -1.79
RBM39-231	ENST00000477334	PTPRCAP	Q14761	206 aa		3.87	□□□□□ -1.79
RBM39-231	ENST00000477334	ITPRIPL2	Q3MIP1	535 aa		3.87	□□□□□ -1.79
RBM39-231	ENST00000477334	KIAA1644	Q3SXP7	199 aa		3.87	□□□□□ -1.79
RBM39-231	ENST00000477334	C1orf141	Q5JVX7	400 aa		3.87	□□□□□ -1.79
RBM39-231	ENST00000477334	KRT39	Q6A163	491 aa		3.87	□□□□□ -1.79
RBM39-231	ENST00000477334	RBPMS2	Q6ZRY4	209 aa	Known RBP	3.87	□□□□□ -1.79
RBM39-231	ENST00000477334	SH2D5	Q6ZV89	423 aa		3.87	□□□□□ -1.79
RBM39-231	ENST00000477334	NUP54	Q7Z3B4	507 aa		3.87	□□□□□ -1.79
RBM39-231	ENST00000477334	CDK20	Q8IZL9	346 aa		3.87	□□□□□ -1.79
RBM39-231	ENST00000477334	XXYLT1	Q8NBI6	393 aa		3.87	□□□□□ -1.79
RBM39-231	ENST00000477334	KBTBD8	Q8NFY9	601 aa		3.87	□□□□□ -1.79
RBM39-231	ENST00000477334	OR11H4	Q8NGC9	324 aa		3.87	□□□□□ -1.79
RBM39-231	ENST00000477334	MRPS27	Q92552	414 aa	Known RBP	3.87	□□□□□ -1.79
RBM39-231	ENST00000477334	DHX58	Q96C10	678 aa		3.87	□□□□□ -1.79
RBM39-231	ENST00000477334	HDAC11	Q96DB2	347 aa		3.87	□□□□□ -1.79
RBM39-231	ENST00000477334	ARSG	Q96EG1	525 aa		3.87	□□□□□ -1.79
RBM39-231	ENST00000477334	THOC1	Q96FV9	657 aa	Known RBP	3.87	□□□□□ -1.79
RBM39-231	ENST00000477334	RADIL	Q96JH8	1075 aa		3.87	□□□□□ -1.79
RBM39-231	ENST00000477334	NUP85	Q9BW27	656 aa		3.87	□□□□□ -1.79
RBM39-231	ENST00000477334	LAT2	Q9GZY6	243 aa		3.87	□□□□□ -1.79
RBM39-231	ENST00000477334	OR10A4	Q9H209	315 aa		3.87	□□□□□ -1.79
RBM39-231	ENST00000477334	GKN1	Q9NS71	199 aa		3.87	□□□□□ -1.79
RBM39-231	ENST00000477334	ZNF701	Q9NV72	531 aa	Predicted RBP	3.87	□□□□□ -1.79
RBM39-231	ENST00000477334	CACNG4	Q9UBN1	327 aa		3.87	□□□□□ -1.79
RBM39-231	ENST00000477334	ZDHHC2	Q9UIJ5	367 aa		3.87	□□□□□ -1.79
RBM39-231	ENST00000477334	CPSF3	Q9UKF6	684 aa	Known RBP	3.87	□□□□□ -1.79
RBM39-231	ENST00000477334	KCNJ14	Q9UNX9	436 aa		3.87	□□□□□ -1.79
RBM39-231	ENST00000477334	C2CD2	Q9Y426	696 aa		3.87	□□□□□ -1.79
RBM39-231	ENST00000477334	RPS6KL1	Q9Y6S9	549 aa		3.87	□□□□□ -1.79
RBM39-231	ENST00000477334	LOC101059948	A0A1B0GTJ6	334 aa		3.86	□□□□□ -1.79
RBM39-231	ENST00000477334		A0A1W2PPQ1	181 aa		3.86	□□□□□ -1.79
RBM39-231	ENST00000477334	NEMP2	A6NFY4	417 aa		3.86	□□□□□ -1.79
RBM39-231	ENST00000477334	ZNF197	O14709	1029 aa		3.86	□□□□□ -1.79
RBM39-231	ENST00000477334	RNASEH1	O60930	286 aa	Known RBP	3.86	□□□□□ -1.79
RBM39-231	ENST00000477334	PRKRA	O75569	313 aa	Known RBP	3.86	□□□□□ -1.79
RBM39-231	ENST00000477334	APOA4	P06727	396 aa		3.86	□□□□□ -1.79
RBM39-231	ENST00000477334	OR52Z1	P0C646	297 aa		3.86	□□□□□ -1.79
RBM39-231	ENST00000477334	PATE4	P0C8F1	98 aa		3.86	□□□□□ -1.79
RBM39-231	ENST00000477334	PRSS56	P0CW18	603 aa		3.86	□□□□□ -1.79
RBM39-231	ENST00000477334	CA4	P22748	312 aa		3.86	□□□□□ -1.79
RBM39-231	ENST00000477334	CHRNB4	P30926	498 aa		3.86	□□□□□ -1.79
RBM39-231	ENST00000477334	MAP2K2	P36507	400 aa		3.86	□□□□□ -1.79
RBM39-231	ENST00000477334	MNDA	P41218	407 aa		3.86	□□□□□ -1.79
RBM39-231	ENST00000477334	RAB28	P51157	221 aa		3.86	□□□□□ -1.79
RBM39-231	ENST00000477334	TUBB4B	P68371	445 aa		3.86	□□□□□ -1.79
RBM39-231	ENST00000477334	RBPJ	Q06330	500 aa		3.86	□□□□□ -1.79
RBM39-231	ENST00000477334	UGP2	Q16851	508 aa		3.86	□□□□□ -1.79
RBM39-231	ENST00000477334	TCP11X2	Q5H9J9	407 aa		3.86	□□□□□ -1.79
RBM39-231	ENST00000477334	KRBOX4	Q5JUW0	171 aa		3.86	□□□□□ -1.79
RBM39-231	ENST00000477334	CST9LP1	Q5W188	147 aa		3.86	□□□□□ -1.79
RBM39-231	ENST00000477334	C15orf39	Q6ZRI6	1047 aa		3.86	□□□□□ -1.79
RBM39-231	ENST00000477334	DET1	Q7L5Y6	550 aa		3.86	□□□□□ -1.79
RBM39-231	ENST00000477334	MAPKAPK5-AS1	Q8N8E1	139 aa		3.86	□□□□□ -1.79
RBM39-231	ENST00000477334	PI4KAP1	Q8N8J0	262 aa		3.86	□□□□□ -1.79
RBM39-231	ENST00000477334	ATL1	Q8WXF7	558 aa		3.86	□□□□□ -1.79
RBM39-231	ENST00000477334	CFAP57	Q96MR6	1250 aa		3.86	□□□□□ -1.79
RBM39-231	ENST00000477334	URM1	Q9BTM9	101 aa	Known RBP	3.86	□□□□□ -1.79
RBM39-231	ENST00000477334	SDR39U1	Q9NRG7	319 aa	Predicted RBP	3.86	□□□□□ -1.79
RBM39-231	ENST00000477334	CFDP1	Q9UEE9	299 aa	Predicted RBP	3.86	□□□□□ -1.79
RBM39-231	ENST00000477334	TMED3	Q9Y3Q3	217 aa		3.86	□□□□□ -1.79
RBM39-231	ENST00000477334		A0A1W2PN81	502 aa		3.85	□□□□□ -1.79
RBM39-231	ENST00000477334	ANKRD61	A6NGH8	418 aa		3.85	□□□□□ -1.79
RBM39-231	ENST00000477334		A8MXE2	369 aa		3.85	□□□□□ -1.79
RBM39-231	ENST00000477334	PTGES	O14684	152 aa		3.85	□□□□□ -1.79
RBM39-231	ENST00000477334	DKC1	O60832	514 aa	Known RBP eCLIP	3.85	□□□□□ -1.79
RBM39-231	ENST00000477334	C22orf31	O95567	290 aa		3.85	□□□□□ -1.79
RBM39-231	ENST00000477334	ACSL3	O95573	720 aa		3.85	□□□□□ -1.79
RBM39-231	ENST00000477334	PLG	P00747	810 aa	Predicted RBP	3.85	□□□□□ -1.79
RBM39-231	ENST00000477334	IGHV2-70	P01814	119 aa		3.85	□□□□□ -1.79
RBM39-231	ENST00000477334	ATP5B	P06576	529 aa	Known RBP	3.85	□□□□□ -1.79
RBM39-231	ENST00000477334	CFC1B	P0CG36	223 aa		3.85	□□□□□ -1.79
RBM39-231	ENST00000477334	CFC1	P0CG37	223 aa		3.85	□□□□□ -1.79
RBM39-231	ENST00000477334	HAPLN1	P10915	354 aa	Predicted RBP	3.85	□□□□□ -1.79
RBM39-231	ENST00000477334	EFNA1	P20827	205 aa	Predicted RBP	3.85	□□□□□ -1.79
RBM39-231	ENST00000477334	ACHE	P22303	614 aa		3.85	□□□□□ -1.79
RBM39-231	ENST00000477334	TCEA1	P23193	301 aa	Known RBP	3.85	□□□□□ -1.79
RBM39-231	ENST00000477334	ITGA3	P26006	1051 aa		3.85	□□□□□ -1.79
RBM39-231	ENST00000477334	HOXC8	P31273	242 aa		3.85	□□□□□ -1.79
RBM39-231	ENST00000477334	CHRNA7	P36544	502 aa		3.85	□□□□□ -1.79
RBM39-231	ENST00000477334	MAT1A	Q00266	395 aa	Known RBP	3.85	□□□□□ -1.79
RBM39-231	ENST00000477334	PRKCZ	Q05513	592 aa		3.85	□□□□□ -1.79
RBM39-231	ENST00000477334	ACSM1	Q08AH1	577 aa		3.85	□□□□□ -1.79

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