RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 LZTFL1Q9NQ48 299 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 NRBP2Q9NSY0 501 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 DNAJC17Q9NVM6 304 aaKnown RBP4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 VPS54Q9P1Q0 977 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 DBF4Q9UBU7 674 aaPredicted RBP4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 MRPS7Q9Y2R9 242 aaKnown RBP4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 AP4B1Q9Y6B7 739 aa4.74□□□□□ -1.65
CCDC88A-210ENST00000468534 SH3TC1Q8TE82 1336 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 A0A087WV48 116 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 A0A1W2PQM1 296 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 CFAP73A6NFT4 308 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 GAGE10A6NGK3 116 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 LRRC53A6NM62 1247 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 OR5K4A6NMS3 321 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 ANXA2P2A6NMY6 339 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 PRR23D1E9PI22 279 aaPredicted RBP4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 LGALS8O00214 317 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 PLK4O00444 970 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 SLC30A4O14863 429 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 SPRY1O43609 319 aaPredicted RBP4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 SCGB2A1O75556 95 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 ZNF189O75820 626 aaPredicted RBP4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 CH25HO95992 272 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 TOMM40O96008 361 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 GBAP04062 536 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 YES1P07947 543 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 PRR23D2P0DMB1 279 aaPredicted RBP4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 AREGP15514 252 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 CYP2B6P20813 491 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 ACP1P24666 158 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 CD27P26842 260 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 TACR3P29371 465 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 NTSR1P30989 418 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 RRM2P31350 389 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 OTX2P32243 289 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 CTNNB1P35222 781 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 SOAT1P35610 550 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 ALDH7A1P49419 539 aaKnown RBP4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 CDH15P55291 814 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 TSPAN5P62079 268 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 SRSF1Q07955 248 aaKnown RBP eCLIP4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 PDCLQ13371 301 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 OLIG2Q13516 323 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 RFTN1Q14699 578 aaPredicted RBP4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 PGM5Q15124 567 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 DECR1Q16698 335 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 ZNF750Q32MQ0 723 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 BCL7AQ4VC05 210 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 EPC2Q52LR7 807 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 SGO1Q5FBB7 561 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 PPP6R3Q5H9R7 873 aaPredicted RBP4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 TMEM63BQ5T3F8 832 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 CASC4Q6P4E1 433 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 LEKR1Q6ZMV7 388 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 CUZD1Q86UP6 607 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 WDR5BQ86VZ2 330 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 CFAP206Q8IYR0 622 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 CLYBLQ8N0X4 340 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 CRYBG2Q8N1P7 616 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 METTL25Q8N6Q8 603 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 C12orf76Q8N812 135 aaPredicted RBP4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 ANKFN1Q8N957 763 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 TC2NQ8N9U0 490 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 CCDC63Q8NA47 563 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 TMEM116Q8NCL8 245 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 OR2T3Q8NH03 318 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 ZNF461Q8TAF7 563 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 EXOC6Q8TAG9 804 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 GPT2Q8TD30 523 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 UBLCP1Q8WVY7 318 aaPredicted RBP4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 RASD2Q96D21 266 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 ZFYVE19Q96K21 471 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 LYZL4Q96KX0 146 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 WDFY2Q96P53 400 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 CYTH2Q99418 400 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 OSBPL8Q9BZF1 889 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 API5Q9BZZ5 524 aaKnown RBP4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 FAM192AQ9GZU8 254 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 VCX2Q9H322 139 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 METTL7AQ9H8H3 244 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 TUFT1Q9NNX1 390 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 KLHL28Q9NXS3 571 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 PKD2L2Q9NZM6 624 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 NKX1-2Q9UD57 310 aaPredicted RBP4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 VPS51Q9UID3 782 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 MID2Q9UJV3 735 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 GDAQ9Y2T3 454 aa4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.73□□□□□ -1.65
CCDC88A-210ENST00000468534 KIF27Q86VH2 1401 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 TRBV2A0A0J9YWF9 115 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 A0A0U1RQS6 177 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 FAM90A8PA6NJQ4 464 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 IQCF5A8MTL0 148 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 EFCAB8A8MWE9 144 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 GOLGA8MH3BSY2 632 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 PRRG1O14668 218 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 INPPL1O15357 1258 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 PAPSS1O43252 624 aaPredicted RBP4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 CNOT3O75175 753 aaKnown RBP4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 DNAJB6O75190 326 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms