RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 NFKBIL1Q9UBC1 381 aaPredicted RBP14.71□□□□□ -0.05
LDLR-202ENST00000455727 CFAP99D6REC4 459 aa14.71□□□□□ -0.05
LDLR-202ENST00000455727 DFNA5O60443 496 aa14.71□□□□□ -0.05
LDLR-202ENST00000455727 PDYNP01213 254 aa14.71□□□□□ -0.05
LDLR-202ENST00000455727 RAP2AP10114 183 aa14.71□□□□□ -0.05
LDLR-202ENST00000455727 PRPS2P11908 318 aa14.71□□□□□ -0.05
LDLR-202ENST00000455727 ACPPP15309 386 aa14.71□□□□□ -0.05
LDLR-202ENST00000455727 PTPN2P17706 415 aa14.71□□□□□ -0.05
LDLR-202ENST00000455727 CYP2A7P20853 494 aa14.71□□□□□ -0.05
LDLR-202ENST00000455727 NFKBIAP25963 317 aa14.71□□□□□ -0.05
LDLR-202ENST00000455727 VIPR1P32241 457 aa14.71□□□□□ -0.05
LDLR-202ENST00000455727 ALDH3B2P48448 385 aa14.71□□□□□ -0.05
LDLR-202ENST00000455727 CLDN8P56748 225 aa14.71□□□□□ -0.05
LDLR-202ENST00000455727 CPSF6Q16630 551 aaKnown RBP eCLIP14.71□□□□□ -0.05
LDLR-202ENST00000455727 SPANXN4Q5MJ08 99 aa14.71□□□□□ -0.05
LDLR-202ENST00000455727 OR2T12Q8NG77 320 aa14.71□□□□□ -0.05
LDLR-202ENST00000455727 TCEAL4Q96EI5 215 aa14.71□□□□□ -0.05
LDLR-202ENST00000455727 RNF145Q96MT1 663 aa14.71□□□□□ -0.05
LDLR-202ENST00000455727 SEPHS2Q99611 448 aa14.71□□□□□ -0.05
LDLR-202ENST00000455727 HEPHQ9BQS7 1158 aa14.71□□□□□ -0.05
LDLR-202ENST00000455727 OSBPL6Q9BZF3 934 aa14.71□□□□□ -0.05
LDLR-202ENST00000455727 ABCG8Q9H221 673 aa14.71□□□□□ -0.05
LDLR-202ENST00000455727 FAM83DQ9H4H8 585 aa14.71□□□□□ -0.05
LDLR-202ENST00000455727 SMPD3Q9NY59 655 aaPredicted RBP14.71□□□□□ -0.05
LDLR-202ENST00000455727 THEGQ9P2T0 379 aa14.71□□□□□ -0.05
LDLR-202ENST00000455727 ZNHIT2Q9UHR6 403 aa14.71□□□□□ -0.05
LDLR-202ENST00000455727 MBD1Q9UIS9 605 aaPredicted RBP14.71□□□□□ -0.05
LDLR-202ENST00000455727 TSPAN11A1L157 253 aa14.7□□□□□ -0.06
LDLR-202ENST00000455727 PABPN1LA6NDY0 278 aaKnown RBP14.7□□□□□ -0.06
LDLR-202ENST00000455727 TRIM64A6NGJ6 449 aa14.7□□□□□ -0.06
LDLR-202ENST00000455727 EI24O14681 340 aa14.7□□□□□ -0.06
LDLR-202ENST00000455727 CLOCKO15516 846 aa14.7□□□□□ -0.06
LDLR-202ENST00000455727 RPS9P46781 194 aaKnown RBP14.7□□□□□ -0.06
LDLR-202ENST00000455727 CYP4F3Q08477 520 aa14.7□□□□□ -0.06
LDLR-202ENST00000455727 DYNC1I2Q13409 638 aaKnown RBP14.7□□□□□ -0.06
LDLR-202ENST00000455727 TEAD2Q15562 447 aa14.7□□□□□ -0.06
LDLR-202ENST00000455727 FAM98BQ52LJ0 330 aaKnown RBP14.7□□□□□ -0.06
LDLR-202ENST00000455727 RUNDC3AQ59EK9 446 aa14.7□□□□□ -0.06
LDLR-202ENST00000455727 FKBP9P1Q75LS8 142 aa14.7□□□□□ -0.06
LDLR-202ENST00000455727 OTOP2Q7RTS6 562 aa14.7□□□□□ -0.06
LDLR-202ENST00000455727 TRIML2Q8N7C3 387 aa14.7□□□□□ -0.06
LDLR-202ENST00000455727 ITFG1Q8TB96 612 aa14.7□□□□□ -0.06
LDLR-202ENST00000455727 MCOLN3Q8TDD5 553 aa14.7□□□□□ -0.06
LDLR-202ENST00000455727 SELENOMQ8WWX9 145 aa14.7□□□□□ -0.06
LDLR-202ENST00000455727 TIFAQ96CG3 184 aa14.7□□□□□ -0.06
LDLR-202ENST00000455727 TCF25Q9BQ70 676 aa14.7□□□□□ -0.06
LDLR-202ENST00000455727 ERVW-1Q9UQF0 538 aa14.7□□□□□ -0.06
LDLR-202ENST00000455727 TMED5Q9Y3A6 229 aa14.7□□□□□ -0.06
LDLR-202ENST00000455727 TRBV5-3A0A0A0MS03 114 aa14.7□□□□□ -0.06
LDLR-202ENST00000455727 A0A1B0GTW7 788 aa14.7□□□□□ -0.06
LDLR-202ENST00000455727 TRIM64CA6NLI5 447 aa14.7□□□□□ -0.06
LDLR-202ENST00000455727 DEAF1O75398 565 aaPredicted RBP14.7□□□□□ -0.06
LDLR-202ENST00000455727 ERN1O75460 977 aaKnown RBP14.7□□□□□ -0.06
LDLR-202ENST00000455727 ERVFC1P60507 584 aa14.7□□□□□ -0.06
LDLR-202ENST00000455727 RPS14P62263 151 aaKnown RBP14.7□□□□□ -0.06
LDLR-202ENST00000455727 ZNF33BQ06732 778 aa14.7□□□□□ -0.06
LDLR-202ENST00000455727 KCNC3Q14003 757 aa14.7□□□□□ -0.06
LDLR-202ENST00000455727 C11orf91Q3C1V1 193 aa14.7□□□□□ -0.06
LDLR-202ENST00000455727 B3GNT6Q6ZMB0 384 aa14.7□□□□□ -0.06
LDLR-202ENST00000455727 VRK3Q8IV63 474 aa14.7□□□□□ -0.06
LDLR-202ENST00000455727 KRTCAP2Q8N6L1 136 aa14.7□□□□□ -0.06
LDLR-202ENST00000455727 MRPL43Q8N983 215 aaKnown RBP14.7□□□□□ -0.06
LDLR-202ENST00000455727 ZNF548Q8NEK5 533 aaPredicted RBP14.7□□□□□ -0.06
LDLR-202ENST00000455727 FRS2Q8WU20 508 aa14.7□□□□□ -0.06
LDLR-202ENST00000455727 POP5Q969H6 163 aaKnown RBP14.7□□□□□ -0.06
LDLR-202ENST00000455727 OTUB2Q96DC9 234 aa14.7□□□□□ -0.06
LDLR-202ENST00000455727 CMTM7Q96FZ5 175 aa14.7□□□□□ -0.06
LDLR-202ENST00000455727 OR52E6Q96RD3 313 aa14.7□□□□□ -0.06
LDLR-202ENST00000455727 FAM83CQ9BQN1 747 aa14.7□□□□□ -0.06
LDLR-202ENST00000455727 THUMPD3Q9BV44 507 aaKnown RBP14.7□□□□□ -0.06
LDLR-202ENST00000455727 UGT2B28Q9BY64 529 aa14.7□□□□□ -0.06
LDLR-202ENST00000455727 ELOVL6Q9H5J4 265 aa14.7□□□□□ -0.06
LDLR-202ENST00000455727 SLC25A37Q9NYZ2 338 aa14.7□□□□□ -0.06
LDLR-202ENST00000455727 MARK1Q9P0L2 795 aa14.7□□□□□ -0.06
LDLR-202ENST00000455727 MAN2B2Q9Y2E5 1009 aa14.7□□□□□ -0.06
LDLR-202ENST00000455727 NOTCH4Q99466 2003 aa14.7□□□□□ -0.06
LDLR-202ENST00000455727 QSOX1O00391 747 aa14.69□□□□□ -0.06
LDLR-202ENST00000455727 BMP10O95393 424 aa14.69□□□□□ -0.06
LDLR-202ENST00000455727 GNAO1P09471 354 aa14.69□□□□□ -0.06
LDLR-202ENST00000455727 ETS2P15036 469 aa14.69□□□□□ -0.06
LDLR-202ENST00000455727 POLR2EP19388 210 aaKnown RBP14.69□□□□□ -0.06
LDLR-202ENST00000455727 SOX11P35716 441 aa14.69□□□□□ -0.06
LDLR-202ENST00000455727 VASPP50552 380 aaPredicted RBP14.69□□□□□ -0.06
LDLR-202ENST00000455727 CHRNB3Q05901 458 aa14.69□□□□□ -0.06
LDLR-202ENST00000455727 ZNF77Q15935 545 aa14.69□□□□□ -0.06
LDLR-202ENST00000455727 PTCHD3Q3KNS1 767 aa14.69□□□□□ -0.06
LDLR-202ENST00000455727 LRIF1Q5T3J3 769 aa14.69□□□□□ -0.06
LDLR-202ENST00000455727 ATG9BQ674R7 924 aa14.69□□□□□ -0.06
LDLR-202ENST00000455727 DET1Q7L5Y6 550 aa14.69□□□□□ -0.06
LDLR-202ENST00000455727 MSRB3Q8IXL7 192 aa14.69□□□□□ -0.06
LDLR-202ENST00000455727 DHRSXQ8N5I4 330 aa14.69□□□□□ -0.06
LDLR-202ENST00000455727 TRAM1L1Q8N609 369 aa14.69□□□□□ -0.06
LDLR-202ENST00000455727 DDHD1Q8NEL9 900 aa14.69□□□□□ -0.06
LDLR-202ENST00000455727 SKA2Q8WVK7 121 aaPredicted RBP14.69□□□□□ -0.06
LDLR-202ENST00000455727 ASZ1Q8WWH4 475 aa14.69□□□□□ -0.06
LDLR-202ENST00000455727 P2RY13Q9BPV8 354 aa14.69□□□□□ -0.06
LDLR-202ENST00000455727 KCNH6Q9H252 994 aa14.69□□□□□ -0.06
LDLR-202ENST00000455727 LINC00597Q9H2U6 94 aa14.69□□□□□ -0.06
LDLR-202ENST00000455727 C11orf49Q9H6J7 331 aa14.69□□□□□ -0.06
LDLR-202ENST00000455727 NIPSNAP3AQ9UFN0 247 aaPredicted RBP14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms