RNA–Protein interactions for RNA: ENST00000450303.6

PRPF40A-204, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-204ENST00000450303 ELMO2Q96JJ3 720 aa16.6■□□□□ 0.25
PRPF40A-204ENST00000450303 C12orf66Q96MD2 445 aa16.6■□□□□ 0.25
PRPF40A-204ENST00000450303 CPNE1Q99829 537 aa16.6■□□□□ 0.25
PRPF40A-204ENST00000450303 SIDT1Q9NXL6 827 aaKnown RBP16.6■□□□□ 0.25
PRPF40A-204ENST00000450303 ZDHHC3Q9NYG2 299 aa16.6■□□□□ 0.25
PRPF40A-204ENST00000450303 FASNP49327 2511 aaKnown RBP16.6■□□□□ 0.25
PRPF40A-204ENST00000450303 SMG1Q96Q15 3661 aaKnown RBP16.59■□□□□ 0.25
PRPF40A-204ENST00000450303 POC1B-GALNT4F8VUJ3 575 aa16.59■□□□□ 0.25
PRPF40A-204ENST00000450303 AGPSO00116 658 aa16.59■□□□□ 0.25
PRPF40A-204ENST00000450303 INHBAP08476 426 aa16.59■□□□□ 0.25
PRPF40A-204ENST00000450303 NUDT17P0C025 328 aa16.59■□□□□ 0.25
PRPF40A-204ENST00000450303 ANKRD34CP0C6C1 535 aa16.59■□□□□ 0.25
PRPF40A-204ENST00000450303 MTHFD1P11586 935 aaKnown RBP16.59■□□□□ 0.25
PRPF40A-204ENST00000450303 ATP1B2P14415 290 aaPredicted RBP16.59■□□□□ 0.25
PRPF40A-204ENST00000450303 LIFP15018 202 aa16.59■□□□□ 0.25
PRPF40A-204ENST00000450303 MSH2P43246 934 aa16.59■□□□□ 0.25
PRPF40A-204ENST00000450303 CTBP1Q13363 440 aa16.59■□□□□ 0.25
PRPF40A-204ENST00000450303 PLCL1Q15111 1095 aa16.59■□□□□ 0.25
PRPF40A-204ENST00000450303 TYSND1Q2T9J0 566 aa16.59■□□□□ 0.25
PRPF40A-204ENST00000450303 LGSNQ5TDP6 509 aa16.59■□□□□ 0.25
PRPF40A-204ENST00000450303 TAOK1Q7L7X3 1001 aa16.59■□□□□ 0.25
PRPF40A-204ENST00000450303 TIPARPQ7Z3E1 657 aaKnown RBP16.59■□□□□ 0.25
PRPF40A-204ENST00000450303 GALNT7Q86SF2 657 aa16.59■□□□□ 0.25
PRPF40A-204ENST00000450303 IQCKQ8N0W5 287 aa16.59■□□□□ 0.25
PRPF40A-204ENST00000450303 ZNF843Q8N446 348 aa16.59■□□□□ 0.25
PRPF40A-204ENST00000450303 ZSCAN1Q8NBB4 408 aa16.59■□□□□ 0.25
PRPF40A-204ENST00000450303 C2CD4AQ8NCU7 369 aaPredicted RBP16.59■□□□□ 0.25
PRPF40A-204ENST00000450303 EXTL1Q92935 676 aa16.59■□□□□ 0.25
PRPF40A-204ENST00000450303 WBP1Q96G27 269 aa16.59■□□□□ 0.25
PRPF40A-204ENST00000450303 TEFMQ96QE5 360 aaKnown RBP16.59■□□□□ 0.25
PRPF40A-204ENST00000450303 SPRY4Q9C004 299 aa16.59■□□□□ 0.25
PRPF40A-204ENST00000450303 EPB41L4BQ9H329 900 aa16.59■□□□□ 0.25
PRPF40A-204ENST00000450303 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.59■□□□□ 0.25
PRPF40A-204ENST00000450303 FETUBQ9UGM5 382 aa16.59■□□□□ 0.25
PRPF40A-204ENST00000450303 PILRAQ9UKJ1 303 aa16.59■□□□□ 0.25
PRPF40A-204ENST00000450303 ATMQ13315 3056 aa16.59■□□□□ 0.25
PRPF40A-204ENST00000450303 PIKFYVEQ9Y2I7 2098 aa16.58■□□□□ 0.25
PRPF40A-204ENST00000450303 HMGB1P1B2RPK0 211 aaPredicted RBP16.58■□□□□ 0.24
PRPF40A-204ENST00000450303 STK17BO94768 372 aa16.58■□□□□ 0.24
PRPF40A-204ENST00000450303 GP5P40197 560 aa16.58■□□□□ 0.24
PRPF40A-204ENST00000450303 NSG1P42857 185 aa16.58■□□□□ 0.24
PRPF40A-204ENST00000450303 SLC1A2P43004 574 aa16.58■□□□□ 0.24
PRPF40A-204ENST00000450303 CSE1LP55060 971 aaKnown RBP16.58■□□□□ 0.24
PRPF40A-204ENST00000450303 LINC00303Q3SY05 128 aa16.58■□□□□ 0.24
PRPF40A-204ENST00000450303 GRTP1Q5TC63 336 aa16.58■□□□□ 0.24
PRPF40A-204ENST00000450303 STRA8Q7Z7C7 330 aa16.58■□□□□ 0.24
PRPF40A-204ENST00000450303 DENND6AQ8IWF6 608 aa16.58■□□□□ 0.24
PRPF40A-204ENST00000450303 PIANPQ8IYJ0 282 aa16.58■□□□□ 0.24
PRPF40A-204ENST00000450303 ZDHHC12Q96GR4 267 aa16.58■□□□□ 0.24
PRPF40A-204ENST00000450303 LINC00615Q96LM1 132 aaPredicted RBP16.58■□□□□ 0.24
PRPF40A-204ENST00000450303 RMDN2Q96LZ7 410 aa16.58■□□□□ 0.24
PRPF40A-204ENST00000450303 OR6C1Q96RD1 312 aa16.58■□□□□ 0.24
PRPF40A-204ENST00000450303 ROPN1BQ9BZX4 212 aaPredicted RBP16.58■□□□□ 0.24
PRPF40A-204ENST00000450303 CCDC68Q9H2F9 335 aa16.58■□□□□ 0.24
PRPF40A-204ENST00000450303 ZNF768Q9H5H4 540 aaKnown RBP16.58■□□□□ 0.24
PRPF40A-204ENST00000450303 ROPN1Q9HAT0 212 aaPredicted RBP16.58■□□□□ 0.24
PRPF40A-204ENST00000450303 MARCH4Q9P2E8 410 aaPredicted RBP16.58■□□□□ 0.24
PRPF40A-204ENST00000450303 SLC24A2Q9UI40 661 aa16.58■□□□□ 0.24
PRPF40A-204ENST00000450303 ACSL5Q9ULC5 683 aa16.58■□□□□ 0.24
PRPF40A-204ENST00000450303 PLAAQ9Y263 795 aa16.58■□□□□ 0.24
PRPF40A-204ENST00000450303 BAHCC1Q9P281 2608 aa16.57■□□□□ 0.24
PRPF40A-204ENST00000450303 LOC101059948A0A1B0GTJ6 334 aa16.57■□□□□ 0.24
PRPF40A-204ENST00000450303 UBA6A0AVT1 1052 aaPredicted RBP16.57■□□□□ 0.24
PRPF40A-204ENST00000450303 CXorf49A8MYA2 514 aaPredicted RBP16.57■□□□□ 0.24
PRPF40A-204ENST00000450303 QSOX1O00391 747 aa16.57■□□□□ 0.24
PRPF40A-204ENST00000450303 S1PR4O95977 384 aa16.57■□□□□ 0.24
PRPF40A-204ENST00000450303 SLC35G4P0C7Q5 338 aa16.57■□□□□ 0.24
PRPF40A-204ENST00000450303 MYZAPP0CAP1 466 aa16.57■□□□□ 0.24
PRPF40A-204ENST00000450303 ZNF28P17035 718 aa16.57■□□□□ 0.24
PRPF40A-204ENST00000450303 SPRP35270 261 aaPredicted RBP16.57■□□□□ 0.24
PRPF40A-204ENST00000450303 CD151P48509 253 aa16.57■□□□□ 0.24
PRPF40A-204ENST00000450303 PRLHRP49683 370 aa16.57■□□□□ 0.24
PRPF40A-204ENST00000450303 SERPINB9P50453 376 aa16.57■□□□□ 0.24
PRPF40A-204ENST00000450303 SEMA3AQ14563 771 aa16.57■□□□□ 0.24
PRPF40A-204ENST00000450303 DBN1Q16643 649 aa16.57■□□□□ 0.24
PRPF40A-204ENST00000450303 UBAP2Q5T6F2 1119 aaKnown RBP16.57■□□□□ 0.24
PRPF40A-204ENST00000450303 LDB1Q86U70 411 aaPredicted RBP16.57■□□□□ 0.24
PRPF40A-204ENST00000450303 NLGN4XQ8N0W4 816 aa16.57■□□□□ 0.24
PRPF40A-204ENST00000450303 CLDN19Q8N6F1 224 aa16.57■□□□□ 0.24
PRPF40A-204ENST00000450303 ARFGAP2Q8N6H7 521 aa16.57■□□□□ 0.24
PRPF40A-204ENST00000450303 EXD3Q8N9H8 876 aa16.57■□□□□ 0.24
PRPF40A-204ENST00000450303 NLGN4YQ8NFZ3 816 aaPredicted RBP16.57■□□□□ 0.24
PRPF40A-204ENST00000450303 ZPBPQ9BS86 351 aa16.57■□□□□ 0.24
PRPF40A-204ENST00000450303 FBXO6Q9NRD1 293 aaPredicted RBP16.57■□□□□ 0.24
PRPF40A-204ENST00000450303 SMYD2Q9NRG4 433 aa16.57■□□□□ 0.24
PRPF40A-204ENST00000450303 EPHA6Q9UF33 1036 aa16.57■□□□□ 0.24
PRPF40A-204ENST00000450303 CORO1CQ9ULV4 474 aaPredicted RBP16.57■□□□□ 0.24
PRPF40A-204ENST00000450303 COMMD10Q9Y6G5 202 aa16.57■□□□□ 0.24
PRPF40A-204ENST00000450303 IGHV5-51A0A0C4DH38 117 aa16.56■□□□□ 0.24
PRPF40A-204ENST00000450303 OR6C74A6NCV1 312 aa16.56■□□□□ 0.24
PRPF40A-204ENST00000450303 PRMT5O14744 637 aaPredicted RBP16.56■□□□□ 0.24
PRPF40A-204ENST00000450303 TOX3O15405 576 aaPredicted RBP16.56■□□□□ 0.24
PRPF40A-204ENST00000450303 CNTFP26441 200 aa16.56■□□□□ 0.24
PRPF40A-204ENST00000450303 MPP1Q00013 466 aa16.56■□□□□ 0.24
PRPF40A-204ENST00000450303 KRT33BQ14525 404 aa16.56■□□□□ 0.24
PRPF40A-204ENST00000450303 TBR1Q16650 682 aa16.56■□□□□ 0.24
PRPF40A-204ENST00000450303 CEP85LQ5SZL2 805 aa16.56■□□□□ 0.24
PRPF40A-204ENST00000450303 CAPRIN2Q6IMN6 1127 aaKnown RBP16.56■□□□□ 0.24
PRPF40A-204ENST00000450303 PACS1Q6VY07 963 aa16.56■□□□□ 0.24
PRPF40A-204ENST00000450303 PRSS42Q7Z5A4 293 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms