RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 CBFA2T3O75081 653 aa15.33■□□□□ 0.04
USP40-206ENST00000443711 TOP3BO95985 862 aaKnown RBP15.33■□□□□ 0.04
USP40-206ENST00000443711 S100BP04271 92 aaPredicted RBP15.33■□□□□ 0.04
USP40-206ENST00000443711 HSD17B2P37059 387 aa15.33■□□□□ 0.04
USP40-206ENST00000443711 CDKL1Q00532 357 aa15.33■□□□□ 0.04
USP40-206ENST00000443711 GRB7Q14451 532 aa15.33■□□□□ 0.04
USP40-206ENST00000443711 PLCL1Q15111 1095 aa15.33■□□□□ 0.04
USP40-206ENST00000443711 PPP1R3AQ16821 1122 aa15.33■□□□□ 0.04
USP40-206ENST00000443711 CCSMST1Q4G0I0 132 aa15.33■□□□□ 0.04
USP40-206ENST00000443711 TECRLQ5HYJ1 363 aa15.33■□□□□ 0.04
USP40-206ENST00000443711 GUSBP11Q6P575 273 aa15.33■□□□□ 0.04
USP40-206ENST00000443711 EFL1Q7Z2Z2 1120 aaKnown RBP15.33■□□□□ 0.04
USP40-206ENST00000443711 OR52E1Q8NGJ3 308 aa15.33■□□□□ 0.04
USP40-206ENST00000443711 ARL8AQ96BM9 186 aa15.33■□□□□ 0.04
USP40-206ENST00000443711 TLCD1Q96CP7 247 aa15.33■□□□□ 0.04
USP40-206ENST00000443711 ATOH8Q96SQ7 321 aa15.33■□□□□ 0.04
USP40-206ENST00000443711 PKP4Q99569 1192 aa15.33■□□□□ 0.04
USP40-206ENST00000443711 RAB11FIP5Q9BXF6 653 aa15.33■□□□□ 0.04
USP40-206ENST00000443711 IQCGQ9H095 443 aaKnown RBP15.33■□□□□ 0.04
USP40-206ENST00000443711 MRPL46Q9H2W6 279 aaKnown RBP15.33■□□□□ 0.04
USP40-206ENST00000443711 SSU72Q9NP77 194 aaKnown RBP15.33■□□□□ 0.04
USP40-206ENST00000443711 ARL15Q9NXU5 204 aa15.33■□□□□ 0.04
USP40-206ENST00000443711 UTP6Q9NYH9 597 aaKnown RBP15.33■□□□□ 0.04
USP40-206ENST00000443711 TMEM216Q9P0N5 145 aa15.33■□□□□ 0.04
USP40-206ENST00000443711 SPATA7Q9P0W8 599 aa15.33■□□□□ 0.04
USP40-206ENST00000443711 RP1P56715 2156 aa15.33■□□□□ 0.04
USP40-206ENST00000443711 ASXL3Q9C0F0 2248 aa15.33■□□□□ 0.04
USP40-206ENST00000443711 PCM1Q15154 2024 aa15.33■□□□□ 0.04
USP40-206ENST00000443711 ZNF839A8K0R7 811 aa15.32■□□□□ 0.04
USP40-206ENST00000443711 TNFSF14O43557 240 aa15.32■□□□□ 0.04
USP40-206ENST00000443711 SPAG7O75391 227 aa15.32■□□□□ 0.04
USP40-206ENST00000443711 ANXA5P08758 320 aa15.32■□□□□ 0.04
USP40-206ENST00000443711 TPBGLP0DKB5 382 aa15.32■□□□□ 0.04
USP40-206ENST00000443711 SHMT2P34897 504 aa15.32■□□□□ 0.04
USP40-206ENST00000443711 KCNC1P48547 511 aa15.32■□□□□ 0.04
USP40-206ENST00000443711 EPHA4P54764 986 aa15.32■□□□□ 0.04
USP40-206ENST00000443711 NR1D2Q14995 579 aa15.32■□□□□ 0.04
USP40-206ENST00000443711 ARHGAP19Q14CB8 494 aa15.32■□□□□ 0.04
USP40-206ENST00000443711 TGFBIQ15582 683 aa15.32■□□□□ 0.04
USP40-206ENST00000443711 CCDC153Q494R4 210 aa15.32■□□□□ 0.04
USP40-206ENST00000443711 CDKL4Q5MAI5 379 aa15.32■□□□□ 0.04
USP40-206ENST00000443711 N4BP2L1Q5TBK1 243 aaPredicted RBP15.32■□□□□ 0.04
USP40-206ENST00000443711 C16orf46Q6P387 395 aa15.32■□□□□ 0.04
USP40-206ENST00000443711 ZNF761Q86XN6 746 aaPredicted RBP15.32■□□□□ 0.04
USP40-206ENST00000443711 OR4E2Q8NGC2 313 aa15.32■□□□□ 0.04
USP40-206ENST00000443711 BAHD1Q8TBE0 780 aaPredicted RBP15.32■□□□□ 0.04
USP40-206ENST00000443711 ATL1Q8WXF7 558 aa15.32■□□□□ 0.04
USP40-206ENST00000443711 CCDC74AQ96AQ1 378 aa15.32■□□□□ 0.04
USP40-206ENST00000443711 FAM122AQ96E09 287 aa15.32■□□□□ 0.04
USP40-206ENST00000443711 ATP6V1G3Q96LB4 118 aa15.32■□□□□ 0.04
USP40-206ENST00000443711 TBC1D10AQ9BXI6 508 aa15.32■□□□□ 0.04
USP40-206ENST00000443711 SRMSQ9H3Y6 488 aa15.32■□□□□ 0.04
USP40-206ENST00000443711 SLC32A1Q9H598 525 aa15.32■□□□□ 0.04
USP40-206ENST00000443711 KCNK4Q9NYG8 393 aa15.32■□□□□ 0.04
USP40-206ENST00000443711 CD274Q9NZQ7 290 aa15.32■□□□□ 0.04
USP40-206ENST00000443711 CIDEBQ9UHD4 219 aa15.32■□□□□ 0.04
USP40-206ENST00000443711 PLAGL1Q9UM63 463 aa15.32■□□□□ 0.04
USP40-206ENST00000443711 USP34Q70CQ2 3546 aa15.32■□□□□ 0.04
USP40-206ENST00000443711 DMDP11532 3685 aa15.31■□□□□ 0.04
USP40-206ENST00000443711 UNC13CQ8NB66 2214 aa15.31■□□□□ 0.04
USP40-206ENST00000443711 MYO15AQ9UKN7 3530 aa15.31■□□□□ 0.04
USP40-206ENST00000443711 FAM221BA6H8Z2 402 aa15.31■□□□□ 0.04
USP40-206ENST00000443711 HMGB1P1B2RPK0 211 aaPredicted RBP15.31■□□□□ 0.04
USP40-206ENST00000443711 SUPT3HB4E1H0 165 aa15.31■□□□□ 0.04
USP40-206ENST00000443711 SUPT3HO75486 399 aa15.31■□□□□ 0.04
USP40-206ENST00000443711 GUCA1CO95843 209 aa15.31■□□□□ 0.04
USP40-206ENST00000443711 CREB1P16220 341 aa15.31■□□□□ 0.04
USP40-206ENST00000443711 ACP1P24666 158 aa15.31■□□□□ 0.04
USP40-206ENST00000443711 ALDH4A1P30038 563 aa15.31■□□□□ 0.04
USP40-206ENST00000443711 PKLRP30613 574 aa15.31■□□□□ 0.04
USP40-206ENST00000443711 RAB28P51157 221 aa15.31■□□□□ 0.04
USP40-206ENST00000443711 MAGOHP61326 146 aaKnown RBP15.31■□□□□ 0.04
USP40-206ENST00000443711 ANKS6Q68DC2 871 aa15.31■□□□□ 0.04
USP40-206ENST00000443711 KLHL35Q6PF15 583 aa15.31■□□□□ 0.04
USP40-206ENST00000443711 CDHR3Q6ZTQ4 885 aa15.31■□□□□ 0.04
USP40-206ENST00000443711 AMIGO1Q86WK6 493 aa15.31■□□□□ 0.04
USP40-206ENST00000443711 Q8N9G6 341 aaPredicted RBP15.31■□□□□ 0.04
USP40-206ENST00000443711 OR2L8Q8NGY9 312 aa15.31■□□□□ 0.04
USP40-206ENST00000443711 IFI44Q8TCB0 444 aa15.31■□□□□ 0.04
USP40-206ENST00000443711 JPH3Q8WXH2 748 aaPredicted RBP15.31■□□□□ 0.04
USP40-206ENST00000443711 EXT2Q93063 718 aa15.31■□□□□ 0.04
USP40-206ENST00000443711 FBXL8Q96CD0 374 aa15.31■□□□□ 0.04
USP40-206ENST00000443711 EGFL8Q99944 293 aa15.31■□□□□ 0.04
USP40-206ENST00000443711 EPB41L1Q9H4G0 881 aa15.31■□□□□ 0.04
USP40-206ENST00000443711 XKR8Q9H6D3 395 aa15.31■□□□□ 0.04
USP40-206ENST00000443711 NUDT4Q9NZJ9 180 aa15.31■□□□□ 0.04
USP40-206ENST00000443711 OR6C2Q9NZP2 312 aa15.31■□□□□ 0.04
USP40-206ENST00000443711 XPR1Q9UBH6 696 aa15.31■□□□□ 0.04
USP40-206ENST00000443711 TMCO1Q9UM00 188 aa15.31■□□□□ 0.04
USP40-206ENST00000443711 ICKQ9UPZ9 632 aa15.31■□□□□ 0.04
USP40-206ENST00000443711 PLLPQ9Y342 182 aa15.31■□□□□ 0.04
USP40-206ENST00000443711 KRT87PA6NCN2 255 aa15.3■□□□□ 0.04
USP40-206ENST00000443711 OR6C74A6NCV1 312 aa15.3■□□□□ 0.04
USP40-206ENST00000443711 B4GAT1O43505 415 aa15.3■□□□□ 0.04
USP40-206ENST00000443711 TYROBPO43914 113 aa15.3■□□□□ 0.04
USP40-206ENST00000443711 PLIN3O60664 434 aa15.3■□□□□ 0.04
USP40-206ENST00000443711 UBXN7O94888 489 aa15.3■□□□□ 0.04
USP40-206ENST00000443711 SLC16A8O95907 504 aa15.3■□□□□ 0.04
USP40-206ENST00000443711 PROCP04070 461 aa15.3■□□□□ 0.04
USP40-206ENST00000443711 AMD1P17707 334 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms