RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 IQCA1LA6NCM1 817 aa8.46□□□□□ -1.05
USP40-203ENST00000427112 HNRNPCL2B2RXH8 293 aa8.46□□□□□ -1.05
USP40-203ENST00000427112 OR7A17O14581 309 aa8.46□□□□□ -1.05
USP40-203ENST00000427112 BCKDKO14874 412 aa8.46□□□□□ -1.05
USP40-203ENST00000427112 TFECO14948 347 aaPredicted RBP8.46□□□□□ -1.05
USP40-203ENST00000427112 MAGEA8P43361 318 aa8.46□□□□□ -1.05
USP40-203ENST00000427112 ZFP36L2P47974 494 aaKnown RBP8.46□□□□□ -1.05
USP40-203ENST00000427112 TGM4P49221 684 aa8.46□□□□□ -1.05
USP40-203ENST00000427112 CSRP3P50461 194 aa8.46□□□□□ -1.05
USP40-203ENST00000427112 BNIP2Q12982 314 aa8.46□□□□□ -1.05
USP40-203ENST00000427112 GANABQ14697 944 aaKnown RBP8.46□□□□□ -1.05
USP40-203ENST00000427112 XKR4Q5GH76 650 aa8.46□□□□□ -1.05
USP40-203ENST00000427112 OLIG3Q7RTU3 272 aa8.46□□□□□ -1.05
USP40-203ENST00000427112 LILRA3Q8N6C8 439 aaPredicted RBP8.46□□□□□ -1.05
USP40-203ENST00000427112 C2orf69Q8N8R5 385 aa8.46□□□□□ -1.05
USP40-203ENST00000427112 DTX3Q8N9I9 347 aa8.46□□□□□ -1.05
USP40-203ENST00000427112 CHDHQ8NE62 594 aaPredicted RBP8.46□□□□□ -1.05
USP40-203ENST00000427112 PIK3C3Q8NEB9 887 aa8.46□□□□□ -1.05
USP40-203ENST00000427112 RORBQ92753 470 aa8.46□□□□□ -1.05
USP40-203ENST00000427112 NELL1Q92832 810 aa8.46□□□□□ -1.05
USP40-203ENST00000427112 NRBF2Q96F24 287 aa8.46□□□□□ -1.05
USP40-203ENST00000427112 REXO5Q96IC2 774 aaKnown RBP8.46□□□□□ -1.05
USP40-203ENST00000427112 DACH2Q96NX9 599 aa8.46□□□□□ -1.05
USP40-203ENST00000427112 ACAT2Q9BWD1 397 aa8.46□□□□□ -1.05
USP40-203ENST00000427112 ZBTB20Q9HC78 741 aaPredicted RBP8.46□□□□□ -1.05
USP40-203ENST00000427112 SH3BP4Q9P0V3 963 aa8.46□□□□□ -1.05
USP40-203ENST00000427112 OPTCQ9UBM4 332 aa8.46□□□□□ -1.05
USP40-203ENST00000427112 SLCO3A1Q9UIG8 710 aa8.46□□□□□ -1.05
USP40-203ENST00000427112 OGDHLQ9ULD0 1010 aa8.46□□□□□ -1.05
USP40-203ENST00000427112 SLC6A14Q9UN76 642 aa8.46□□□□□ -1.05
USP40-203ENST00000427112 BOLA1Q9Y3E2 137 aa8.46□□□□□ -1.05
USP40-203ENST00000427112 SPTBP11277 2137 aa8.46□□□□□ -1.05
USP40-203ENST00000427112 ELOVL7A1L3X0 281 aa8.46□□□□□ -1.05
USP40-203ENST00000427112 ANKRD66B4E2M5 251 aa8.46□□□□□ -1.05
USP40-203ENST00000427112 PRMT5O14744 637 aaPredicted RBP8.46□□□□□ -1.05
USP40-203ENST00000427112 ALPLP05186 524 aa8.46□□□□□ -1.05
USP40-203ENST00000427112 FGF1P05230 155 aa8.46□□□□□ -1.05
USP40-203ENST00000427112 PGRP06401 933 aa8.46□□□□□ -1.05
USP40-203ENST00000427112 HOXD9P28356 352 aaPredicted RBP8.46□□□□□ -1.05
USP40-203ENST00000427112 HPCAL1P37235 193 aa8.46□□□□□ -1.05
USP40-203ENST00000427112 SLC19A1P41440 591 aa8.46□□□□□ -1.05
USP40-203ENST00000427112 TRPC1P48995 793 aa8.46□□□□□ -1.05
USP40-203ENST00000427112 PHC1P78364 1004 aa8.46□□□□□ -1.05
USP40-203ENST00000427112 MTA1Q13330 715 aa8.46□□□□□ -1.05
USP40-203ENST00000427112 PON2Q15165 354 aa8.46□□□□□ -1.05
USP40-203ENST00000427112 TXNDC8Q6A555 127 aa8.46□□□□□ -1.05
USP40-203ENST00000427112 XAF1Q6GPH4 301 aa8.46□□□□□ -1.05
USP40-203ENST00000427112 SERPINA13PQ6UXR4 307 aa8.46□□□□□ -1.05
USP40-203ENST00000427112 STON2Q8WXE9 905 aa8.46□□□□□ -1.05
USP40-203ENST00000427112 TRIB2Q92519 343 aa8.46□□□□□ -1.05
USP40-203ENST00000427112 KCNS3Q9BQ31 491 aa8.46□□□□□ -1.05
USP40-203ENST00000427112 OLA1Q9NTK5 396 aaKnown RBP8.46□□□□□ -1.05
USP40-203ENST00000427112 MTPAPQ9NVV4 582 aaKnown RBP eCLIP8.46□□□□□ -1.05
USP40-203ENST00000427112 ACSL6Q9UKU0 697 aa8.46□□□□□ -1.05
USP40-203ENST00000427112 ORC6Q9Y5N6 252 aa8.46□□□□□ -1.05
USP40-203ENST00000427112 LOC105378220A0A1B0GUY1 285 aaPredicted RBP8.46□□□□□ -1.06
USP40-203ENST00000427112 RGS5O15539 181 aa8.46□□□□□ -1.06
USP40-203ENST00000427112 SSX4O60224 188 aa8.46□□□□□ -1.06
USP40-203ENST00000427112 NDUFS2O75306 463 aa8.46□□□□□ -1.06
USP40-203ENST00000427112 NME6O75414 186 aaPredicted RBP8.46□□□□□ -1.06
USP40-203ENST00000427112 SEMA3DO95025 777 aa8.46□□□□□ -1.06
USP40-203ENST00000427112 HSD17B1P14061 328 aa8.46□□□□□ -1.06
USP40-203ENST00000427112 JAK1P23458 1154 aa8.46□□□□□ -1.06
USP40-203ENST00000427112 CRHBPP24387 322 aa8.46□□□□□ -1.06
USP40-203ENST00000427112 PPP3CCP48454 512 aa8.46□□□□□ -1.06
USP40-203ENST00000427112 ACADVLP49748 655 aa8.46□□□□□ -1.06
USP40-203ENST00000427112 AIF1P55008 147 aa8.46□□□□□ -1.06
USP40-203ENST00000427112 EMX1Q04741 257 aaPredicted RBP8.46□□□□□ -1.06
USP40-203ENST00000427112 FAM110CQ1W6H9 321 aa8.46□□□□□ -1.06
USP40-203ENST00000427112 ADPRMQ3LIE5 342 aa8.46□□□□□ -1.06
USP40-203ENST00000427112 AASDHQ4L235 1098 aaPredicted RBP8.46□□□□□ -1.06
USP40-203ENST00000427112 SPRYD7Q5W111 196 aa8.46□□□□□ -1.06
USP40-203ENST00000427112 Q6ZNX1 250 aa8.46□□□□□ -1.06
USP40-203ENST00000427112 GATAD2AQ86YP4 633 aa8.46□□□□□ -1.06
USP40-203ENST00000427112 ZDHHC21Q8IVQ6 265 aa8.46□□□□□ -1.06
USP40-203ENST00000427112 APCDD1Q8J025 514 aa8.46□□□□□ -1.06
USP40-203ENST00000427112 UMODL1-AS1Q8N2C9 162 aa8.46□□□□□ -1.06
USP40-203ENST00000427112 CHCHD6Q9BRQ6 235 aa8.46□□□□□ -1.06
USP40-203ENST00000427112 TRMOQ9BU70 441 aa8.46□□□□□ -1.06
USP40-203ENST00000427112 MAGEE1Q9HCI5 957 aa8.46□□□□□ -1.06
USP40-203ENST00000427112 SLC22A14Q9Y267 594 aa8.46□□□□□ -1.06
USP40-203ENST00000427112 GIT1Q9Y2X7 761 aa8.46□□□□□ -1.06
USP40-203ENST00000427112 SAMHD1Q9Y3Z3 626 aaKnown RBP8.46□□□□□ -1.06
USP40-203ENST00000427112 PRKAB1Q9Y478 270 aa8.46□□□□□ -1.06
USP40-203ENST00000427112 GMPPBQ9Y5P6 360 aa8.46□□□□□ -1.06
USP40-203ENST00000427112 URB1O60287 2271 aaKnown RBP8.46□□□□□ -1.06
USP40-203ENST00000427112 A0A0U1RQF3 1178 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 TBKBP1A7MCY6 615 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 UPK1AO00322 258 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 IFRD1O00458 451 aaPredicted RBP8.45□□□□□ -1.06
USP40-203ENST00000427112 PRAMEF11O60813 436 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 CLPXO76031 633 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 GPIP06744 558 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 MBL2P11226 248 aaPredicted RBP8.45□□□□□ -1.06
USP40-203ENST00000427112 PIM1P11309 404 aaPredicted RBP8.45□□□□□ -1.06
USP40-203ENST00000427112 IGFBP5P24593 272 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 HNF4AP41235 474 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 ALDH3A2P51648 485 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 MXD1Q05195 221 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 CDH18Q13634 790 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms