RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 CACNA2D3Q8IZS8 1091 aa16.67■□□□□ 0.26
CCDC28B-202ENST00000421922 TEX9Q8N6V9 391 aa16.67■□□□□ 0.26
CCDC28B-202ENST00000421922 ZNF781Q8N8C0 355 aa16.67■□□□□ 0.26
CCDC28B-202ENST00000421922 OR5AR1Q8NGP9 310 aa16.67■□□□□ 0.26
CCDC28B-202ENST00000421922 ESAMQ96AP7 390 aa16.67■□□□□ 0.26
CCDC28B-202ENST00000421922 CXorf40BQ96DE9 158 aa16.67■□□□□ 0.26
CCDC28B-202ENST00000421922 MOCOSQ96EN8 888 aa16.67■□□□□ 0.26
CCDC28B-202ENST00000421922 MED8Q96G25 268 aa16.67■□□□□ 0.26
CCDC28B-202ENST00000421922 FAR2Q96K12 515 aa16.67■□□□□ 0.26
CCDC28B-202ENST00000421922 INSM2Q96T92 566 aaPredicted RBP16.67■□□□□ 0.26
CCDC28B-202ENST00000421922 SORT1Q99523 831 aa16.67■□□□□ 0.26
CCDC28B-202ENST00000421922 PKP4Q99569 1192 aa16.67■□□□□ 0.26
CCDC28B-202ENST00000421922 TMEM79Q9BSE2 394 aa16.67■□□□□ 0.26
CCDC28B-202ENST00000421922 C20orf27Q9GZN8 174 aa16.67■□□□□ 0.26
CCDC28B-202ENST00000421922 KCNH6Q9H252 994 aa16.67■□□□□ 0.26
CCDC28B-202ENST00000421922 MVB12BQ9H7P6 319 aa16.67■□□□□ 0.26
CCDC28B-202ENST00000421922 MID1IP1Q9NPA3 183 aa16.67■□□□□ 0.26
CCDC28B-202ENST00000421922 PRDM8Q9NQV8 689 aa16.67■□□□□ 0.26
CCDC28B-202ENST00000421922 STOX2Q9P2F5 926 aaPredicted RBP16.67■□□□□ 0.26
CCDC28B-202ENST00000421922 KLHL14Q9P2G3 628 aa16.67■□□□□ 0.26
CCDC28B-202ENST00000421922 POLG2Q9UHN1 485 aa16.67■□□□□ 0.26
CCDC28B-202ENST00000421922 DOLKQ9UPQ8 538 aa16.67■□□□□ 0.26
CCDC28B-202ENST00000421922 COLEC10Q9Y6Z7 277 aa16.67■□□□□ 0.26
CCDC28B-202ENST00000421922 ATXN2Q99700 1313 aaKnown RBP16.67■□□□□ 0.26
CCDC28B-202ENST00000421922 TDRD6O60522 2096 aaKnown RBP16.66■□□□□ 0.26
CCDC28B-202ENST00000421922 A0A1B0GTW7 788 aa16.66■□□□□ 0.26
CCDC28B-202ENST00000421922 MYO1CO00159 1063 aa16.66■□□□□ 0.26
CCDC28B-202ENST00000421922 E2F3O00716 465 aa16.66■□□□□ 0.26
CCDC28B-202ENST00000421922 VILLO15195 856 aa16.66■□□□□ 0.26
CCDC28B-202ENST00000421922 TAPBPO15533 448 aa16.66■□□□□ 0.26
CCDC28B-202ENST00000421922 EPB42P16452 691 aa16.66■□□□□ 0.26
CCDC28B-202ENST00000421922 TSPAN8P19075 237 aa16.66■□□□□ 0.26
CCDC28B-202ENST00000421922 ITPKAP23677 461 aa16.66■□□□□ 0.26
CCDC28B-202ENST00000421922 NDUFS1P28331 727 aa16.66■□□□□ 0.26
CCDC28B-202ENST00000421922 CCNG1P51959 295 aa16.66■□□□□ 0.26
CCDC28B-202ENST00000421922 NXPH1P58417 271 aa16.66■□□□□ 0.26
CCDC28B-202ENST00000421922 SRSF5Q13243 272 aaKnown RBP16.66■□□□□ 0.26
CCDC28B-202ENST00000421922 ELOCQ15369 112 aa16.66■□□□□ 0.26
CCDC28B-202ENST00000421922 C18orf21Q32NC0 220 aaPredicted RBP16.66■□□□□ 0.26
CCDC28B-202ENST00000421922 PRRT3Q5FWE3 981 aa16.66■□□□□ 0.26
CCDC28B-202ENST00000421922 AGTRAPQ6RW13 159 aa16.66■□□□□ 0.26
CCDC28B-202ENST00000421922 WASH2PQ6VEQ5 465 aa16.66■□□□□ 0.26
CCDC28B-202ENST00000421922 GOLGA7Q7Z5G4 137 aa16.66■□□□□ 0.26
CCDC28B-202ENST00000421922 TRIM48Q8IWZ4 208 aa16.66■□□□□ 0.26
CCDC28B-202ENST00000421922 MAML2Q8IZL2 1156 aaPredicted RBP16.66■□□□□ 0.26
CCDC28B-202ENST00000421922 CCDC197Q8NCU1 140 aa16.66■□□□□ 0.26
CCDC28B-202ENST00000421922 PHC3Q8NDX5 983 aa16.66■□□□□ 0.26
CCDC28B-202ENST00000421922 NSUN5Q96P11 429 aaKnown RBP16.66■□□□□ 0.26
CCDC28B-202ENST00000421922 RAB11FIP5Q9BXF6 653 aa16.66■□□□□ 0.26
CCDC28B-202ENST00000421922 ATG10Q9H0Y0 220 aa16.66■□□□□ 0.26
CCDC28B-202ENST00000421922 SLC32A1Q9H598 525 aa16.66■□□□□ 0.26
CCDC28B-202ENST00000421922 WASH6PQ9NQA3 447 aa16.66■□□□□ 0.26
CCDC28B-202ENST00000421922 DNAJC11Q9NVH1 559 aa16.66■□□□□ 0.26
CCDC28B-202ENST00000421922 PNPOQ9NVS9 261 aa16.66■□□□□ 0.26
CCDC28B-202ENST00000421922 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.66■□□□□ 0.26
CCDC28B-202ENST00000421922 TBC1D29Q9UFV1 150 aa16.66■□□□□ 0.26
CCDC28B-202ENST00000421922 CIDEBQ9UHD4 219 aa16.66■□□□□ 0.26
CCDC28B-202ENST00000421922 DCTN4Q9UJW0 460 aa16.66■□□□□ 0.26
CCDC28B-202ENST00000421922 WDR37Q9Y2I8 494 aa16.66■□□□□ 0.26
CCDC28B-202ENST00000421922 FIS1Q9Y3D6 152 aa16.66■□□□□ 0.26
CCDC28B-202ENST00000421922 A0A0G2JND7 137 aa16.65■□□□□ 0.26
CCDC28B-202ENST00000421922 SNX3O60493 162 aa16.65■□□□□ 0.26
CCDC28B-202ENST00000421922 SLC16A8O95907 504 aa16.65■□□□□ 0.26
CCDC28B-202ENST00000421922 CHEK2O96017 543 aa16.65■□□□□ 0.26
CCDC28B-202ENST00000421922 OTCP00480 354 aa16.65■□□□□ 0.26
CCDC28B-202ENST00000421922 MTHFD1P11586 935 aaKnown RBP16.65■□□□□ 0.26
CCDC28B-202ENST00000421922 F3P13726 295 aa16.65■□□□□ 0.26
CCDC28B-202ENST00000421922 AVPR2P30518 371 aa16.65■□□□□ 0.26
CCDC28B-202ENST00000421922 GGT5P36269 586 aa16.65■□□□□ 0.26
CCDC28B-202ENST00000421922 HSD17B2P37059 387 aa16.65■□□□□ 0.26
CCDC28B-202ENST00000421922 CSNK1EP49674 416 aaKnown RBP16.65■□□□□ 0.26
CCDC28B-202ENST00000421922 PRKG2Q13237 762 aa16.65■□□□□ 0.26
CCDC28B-202ENST00000421922 RPE65Q16518 533 aa16.65■□□□□ 0.26
CCDC28B-202ENST00000421922 ZNF528Q3MIS6 628 aa16.65■□□□□ 0.26
CCDC28B-202ENST00000421922 DUS1LQ6P1R4 473 aaKnown RBP16.65■□□□□ 0.26
CCDC28B-202ENST00000421922 GPRIN3Q6ZVF9 776 aa16.65■□□□□ 0.26
CCDC28B-202ENST00000421922 GPBAR1Q8TDU6 330 aa16.65■□□□□ 0.26
CCDC28B-202ENST00000421922 PLCD4Q9BRC7 762 aa16.65■□□□□ 0.26
CCDC28B-202ENST00000421922 ABCF3Q9NUQ8 709 aa16.65■□□□□ 0.26
CCDC28B-202ENST00000421922 ZSCAN32Q9NX65 697 aa16.65■□□□□ 0.26
CCDC28B-202ENST00000421922 SPATA7Q9P0W8 599 aa16.65■□□□□ 0.26
CCDC28B-202ENST00000421922 SPASTQ9UBP0 616 aa16.65■□□□□ 0.26
CCDC28B-202ENST00000421922 VTI1BQ9UEU0 232 aa16.65■□□□□ 0.26
CCDC28B-202ENST00000421922 PNMA8BQ9ULN7 279 aaPredicted RBP16.65■□□□□ 0.26
CCDC28B-202ENST00000421922 KRT87PA6NCN2 255 aa16.64■□□□□ 0.25
CCDC28B-202ENST00000421922 PRR19A6NJB7 356 aa16.64■□□□□ 0.25
CCDC28B-202ENST00000421922 OR52A4PA6NMU1 304 aa16.64■□□□□ 0.25
CCDC28B-202ENST00000421922 CSF2P04141 144 aa16.64■□□□□ 0.25
CCDC28B-202ENST00000421922 NME1P15531 152 aaKnown RBP16.64■□□□□ 0.25
CCDC28B-202ENST00000421922 IMPA1P29218 277 aa16.64■□□□□ 0.25
CCDC28B-202ENST00000421922 ARRB2P32121 409 aa16.64■□□□□ 0.25
CCDC28B-202ENST00000421922 DPP6P42658 865 aa16.64■□□□□ 0.25
CCDC28B-202ENST00000421922 GDF5P43026 501 aa16.64■□□□□ 0.25
CCDC28B-202ENST00000421922 ARFIP2P53365 341 aa16.64■□□□□ 0.25
CCDC28B-202ENST00000421922 PNLIPRP1P54315 467 aa16.64■□□□□ 0.25
CCDC28B-202ENST00000421922 PKNOX1P55347 436 aa16.64■□□□□ 0.25
CCDC28B-202ENST00000421922 HNRNPKP61978 463 aaKnown RBP eCLIP16.64■□□□□ 0.25
CCDC28B-202ENST00000421922 NAE1Q13564 534 aa16.64■□□□□ 0.25
CCDC28B-202ENST00000421922 CLCA4Q14CN2 919 aa16.64■□□□□ 0.25
CCDC28B-202ENST00000421922 PTCHD3Q3KNS1 767 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms