RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 DCP2Q8IU60 420 aaKnown RBP8.35□□□□□ -1.07
SYNE1-211ENST00000413186 TAGAPQ8N103 731 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 TTLQ8NG68 377 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 NAF1Q96HR8 494 aaKnown RBP8.35□□□□□ -1.07
SYNE1-211ENST00000413186 VPS50Q96JG6 964 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 TBC1D10AQ9BXI6 508 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 CROTQ9UKG9 612 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 TMEM98Q9Y2Y6 226 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 FAM32AQ9Y421 112 aaKnown RBP8.35□□□□□ -1.07
SYNE1-211ENST00000413186 DTNAQ9Y4J8 743 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 SPO11Q9Y5K1 396 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 GOLGA4Q13439 2230 aaKnown RBP8.34□□□□□ -1.07
SYNE1-211ENST00000413186 SYNDIG1LA6NDD5 238 aa8.34□□□□□ -1.07
SYNE1-211ENST00000413186 PRAMEF26H0Y7S4 382 aa8.34□□□□□ -1.07
SYNE1-211ENST00000413186 SLC22A2O15244 555 aa8.34□□□□□ -1.07
SYNE1-211ENST00000413186 RGRP47804 291 aa8.34□□□□□ -1.07
SYNE1-211ENST00000413186 CDC16Q13042 620 aa8.34□□□□□ -1.07
SYNE1-211ENST00000413186 SLC30A9Q6PML9 568 aa8.34□□□□□ -1.07
SYNE1-211ENST00000413186 LIPIQ6XZB0 460 aa8.34□□□□□ -1.07
SYNE1-211ENST00000413186 RRM2BQ7LG56 351 aa8.34□□□□□ -1.07
SYNE1-211ENST00000413186 TSPAN33Q86UF1 283 aa8.34□□□□□ -1.07
SYNE1-211ENST00000413186 DEFB107AQ8IZN7 70 aa8.34□□□□□ -1.07
SYNE1-211ENST00000413186 NOL11Q9H8H0 719 aaKnown RBP8.34□□□□□ -1.07
SYNE1-211ENST00000413186 AKAP10O43572 662 aa8.34□□□□□ -1.07
SYNE1-211ENST00000413186 PEX11AO75192 247 aa8.34□□□□□ -1.07
SYNE1-211ENST00000413186 MFN2O95140 757 aa8.34□□□□□ -1.07
SYNE1-211ENST00000413186 IFNA14P01570 189 aa8.34□□□□□ -1.07
SYNE1-211ENST00000413186 IDO1P14902 403 aa8.34□□□□□ -1.07
SYNE1-211ENST00000413186 TNNI3P19429 210 aa8.34□□□□□ -1.07
SYNE1-211ENST00000413186 IMPDH1P20839 514 aa8.34□□□□□ -1.07
SYNE1-211ENST00000413186 RPS3P23396 243 aaKnown RBP eCLIP8.34□□□□□ -1.07
SYNE1-211ENST00000413186 NCALDP61601 193 aa8.34□□□□□ -1.07
SYNE1-211ENST00000413186 KCNC3Q14003 757 aa8.34□□□□□ -1.07
SYNE1-211ENST00000413186 SPIDRQ14159 915 aa8.34□□□□□ -1.07
SYNE1-211ENST00000413186 ZC3H14Q6PJT7 736 aaKnown RBP8.34□□□□□ -1.07
SYNE1-211ENST00000413186 PRR23CQ6ZRP0 262 aa8.34□□□□□ -1.07
SYNE1-211ENST00000413186 CYP4V2Q6ZWL3 525 aaPredicted RBP8.34□□□□□ -1.07
SYNE1-211ENST00000413186 CYP4X1Q8N118 509 aa8.34□□□□□ -1.07
SYNE1-211ENST00000413186 DDX51Q8N8A6 666 aaKnown RBP eCLIP8.34□□□□□ -1.07
SYNE1-211ENST00000413186 KLHL4Q9C0H6 718 aa8.34□□□□□ -1.07
SYNE1-211ENST00000413186 IL1RL2Q9HB29 575 aa8.34□□□□□ -1.07
SYNE1-211ENST00000413186 RC3H2Q9HBD1 1191 aaKnown RBP8.34□□□□□ -1.07
SYNE1-211ENST00000413186 PRSS16Q9NQE7 514 aa8.34□□□□□ -1.07
SYNE1-211ENST00000413186 SLC17A6Q9P2U8 582 aa8.34□□□□□ -1.07
SYNE1-211ENST00000413186 PADI4Q9UM07 663 aa8.34□□□□□ -1.07
SYNE1-211ENST00000413186 CCDC154A6NI56 674 aa8.34□□□□□ -1.07
SYNE1-211ENST00000413186 CBX6O95503 412 aa8.34□□□□□ -1.07
SYNE1-211ENST00000413186 CPSF4O95639 269 aaKnown RBP8.34□□□□□ -1.07
SYNE1-211ENST00000413186 TSPAN8P19075 237 aa8.34□□□□□ -1.07
SYNE1-211ENST00000413186 PPP2R1BP30154 601 aa8.34□□□□□ -1.07
SYNE1-211ENST00000413186 ARSDP51689 593 aa8.34□□□□□ -1.07
SYNE1-211ENST00000413186 NME5P56597 212 aa8.34□□□□□ -1.07
SYNE1-211ENST00000413186 OCLNQ16625 522 aa8.34□□□□□ -1.07
SYNE1-211ENST00000413186 ARL13AQ5H913 290 aaPredicted RBP8.34□□□□□ -1.07
SYNE1-211ENST00000413186 PGBD2Q6P3X8 592 aa8.34□□□□□ -1.07
SYNE1-211ENST00000413186 BHLHA9Q7RTU4 235 aa8.34□□□□□ -1.07
SYNE1-211ENST00000413186 SPATA19Q7Z5L4 167 aa8.34□□□□□ -1.07
SYNE1-211ENST00000413186 MTFMTQ96DP5 389 aaKnown RBP8.34□□□□□ -1.07
SYNE1-211ENST00000413186 TPSD1Q9BZJ3 242 aa8.34□□□□□ -1.07
SYNE1-211ENST00000413186 SLCO1B3Q9NPD5 702 aa8.34□□□□□ -1.07
SYNE1-211ENST00000413186 SELENONQ9NZV5 590 aa8.34□□□□□ -1.07
SYNE1-211ENST00000413186 AURKCQ9UQB9 309 aa8.34□□□□□ -1.07
SYNE1-211ENST00000413186 C15orf41Q9Y2V0 281 aa8.34□□□□□ -1.07
SYNE1-211ENST00000413186 SIT1Q9Y3P8 196 aa8.34□□□□□ -1.07
SYNE1-211ENST00000413186 ZCWPW2A0A1B0GU75 182 aa8.34□□□□□ -1.08
SYNE1-211ENST00000413186 C2orf74A8MZ97 194 aa8.34□□□□□ -1.08
SYNE1-211ENST00000413186 DCXO43602 365 aa8.34□□□□□ -1.08
SYNE1-211ENST00000413186 SLC35G6P0C7Q6 338 aa8.34□□□□□ -1.08
SYNE1-211ENST00000413186 ZNF806P0C7X5 589 aa8.34□□□□□ -1.08
SYNE1-211ENST00000413186 COX7A2P14406 83 aa8.34□□□□□ -1.08
SYNE1-211ENST00000413186 HERVK_113P63132 956 aa8.34□□□□□ -1.08
SYNE1-211ENST00000413186 C16orf72Q14CZ0 275 aa8.34□□□□□ -1.08
SYNE1-211ENST00000413186 IRAK1BP1Q5VVH5 260 aa8.34□□□□□ -1.08
SYNE1-211ENST00000413186 ULK3Q6PHR2 472 aa8.34□□□□□ -1.08
SYNE1-211ENST00000413186 CLNKQ7Z7G1 428 aa8.34□□□□□ -1.08
SYNE1-211ENST00000413186 RNASE11Q8TAA1 199 aaKnown RBP8.34□□□□□ -1.08
SYNE1-211ENST00000413186 DTD2Q96FN9 168 aa8.34□□□□□ -1.08
SYNE1-211ENST00000413186 SMAD5Q99717 465 aaKnown RBP8.34□□□□□ -1.08
SYNE1-211ENST00000413186 ERVK-6Q9BXR3 956 aa8.34□□□□□ -1.08
SYNE1-211ENST00000413186 HDAC8Q9BY41 377 aa8.34□□□□□ -1.08
SYNE1-211ENST00000413186 SLC32A1Q9H598 525 aa8.34□□□□□ -1.08
SYNE1-211ENST00000413186 NOL6Q9H6R4 1146 aaKnown RBP8.34□□□□□ -1.08
SYNE1-211ENST00000413186 CD248Q9HCU0 757 aa8.34□□□□□ -1.08
SYNE1-211ENST00000413186 IL26Q9NPH9 171 aa8.34□□□□□ -1.08
SYNE1-211ENST00000413186 GMEB2Q9UKD1 530 aa8.34□□□□□ -1.08
SYNE1-211ENST00000413186 KCNK6Q9Y257 313 aa8.34□□□□□ -1.08
SYNE1-211ENST00000413186 PSAT1Q9Y617 370 aa8.34□□□□□ -1.08
SYNE1-211ENST00000413186 TRIOBPQ9H2D6 2365 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 LDB2O43679 373 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 ZNF37AP17032 561 aaPredicted RBP8.33□□□□□ -1.08
SYNE1-211ENST00000413186 SSR2P43308 183 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 ASMTP46597 345 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 PSME3P61289 254 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 HNRNPKP61978 463 aaKnown RBP eCLIP8.33□□□□□ -1.08
SYNE1-211ENST00000413186 RPL38P63173 70 aaKnown RBP8.33□□□□□ -1.08
SYNE1-211ENST00000413186 AFMIDQ63HM1 303 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 PSAPL1Q6NUJ1 521 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 USP30Q70CQ3 517 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 STX19Q8N4C7 294 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 EEF1AKMT1Q8WVE0 214 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms