RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 TNPO3Q9Y5L0 923 aaKnown RBP7.17□□□□□ -1.26
SCN9A-202ENST00000409435 E7EQ34 232 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 AQP9O43315 295 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 AGFG2O95081 481 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 SNRPAP09012 282 aaKnown RBP7.16□□□□□ -1.26
SCN9A-202ENST00000409435 POU1F1P28069 291 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 RGS6P49758 472 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 ALDH3A2P51648 485 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 NAA20P61599 178 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 ZNF234Q14588 700 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 ZBTB6Q15916 424 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 FAM98BQ52LJ0 330 aaKnown RBP7.16□□□□□ -1.26
SCN9A-202ENST00000409435 CASP12Q6UXS9 341 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 VN1R5Q7Z5H4 357 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 NET1Q7Z628 596 aaPredicted RBP7.16□□□□□ -1.26
SCN9A-202ENST00000409435 TMEM25Q86YD3 366 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 DNAJC5GQ8N7S2 189 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 OR4L1Q8NH43 312 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 CLP1Q92989 425 aaKnown RBP7.16□□□□□ -1.26
SCN9A-202ENST00000409435 DGAT2Q96PD7 388 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 PCYT2Q99447 389 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 SLC4A5Q9BY07 1137 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 DGCR6LQ9BY27 220 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 KLRF1Q9NZS2 232 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 SPATA7Q9P0W8 599 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 CLEC4AQ9UMR7 237 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 SNX12Q9UMY4 172 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 CFL2Q9Y281 166 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 COQ6Q9Y2Z9 468 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 A0A0J9YVX5 310 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 C5orf60A6NFR6 353 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 SOBPA7XYQ1 873 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 PDLIM1O00151 329 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 TFECO14948 347 aaPredicted RBP7.16□□□□□ -1.26
SCN9A-202ENST00000409435 PRAMEF1O95521 474 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 CXCL10P02778 98 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 ZNF3P17036 446 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 POLR2CP19387 275 aaPredicted RBP7.16□□□□□ -1.26
SCN9A-202ENST00000409435 TFE3P19532 575 aaPredicted RBP7.16□□□□□ -1.26
SCN9A-202ENST00000409435 CYP4F2P78329 520 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 CCDC58Q4VC31 144 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 EARS2Q5JPH6 523 aaKnown RBP7.16□□□□□ -1.26
SCN9A-202ENST00000409435 TAS1R1Q7RTX1 841 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 STRA8Q7Z7C7 330 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 FBXL16Q8N461 479 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 C7orf57Q8NEG2 295 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 GAB3Q8WWW8 586 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 TP53INP1Q96A56 240 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 CIDECQ96AQ7 238 aaPredicted RBP7.16□□□□□ -1.26
SCN9A-202ENST00000409435 BTBD10Q9BSF8 475 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 CHRAC1Q9NRG0 131 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 SLC9A8Q9Y2E8 581 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 REXO2Q9Y3B8 237 aaKnown RBP7.16□□□□□ -1.26
SCN9A-202ENST00000409435 PCDHB1Q9Y5F3 818 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 FAM220BPB1ANY3 271 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 MCIDASD6RGH6 385 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 TLR4O00206 839 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 SLC28A1O00337 649 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 GMFGO60234 142 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 KHDRBS3O75525 346 aaKnown RBP7.16□□□□□ -1.26
SCN9A-202ENST00000409435 TNFSF15O95150 251 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 GSRP00390 522 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 TP53P04637 393 aaPredicted RBP7.16□□□□□ -1.26
SCN9A-202ENST00000409435 FAUP35544 74 aaKnown RBP7.16□□□□□ -1.26
SCN9A-202ENST00000409435 POLD2P49005 469 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 ARSFP54793 590 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 RPS3AP61247 264 aaKnown RBP7.16□□□□□ -1.26
SCN9A-202ENST00000409435 SSX2Q16385 188 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 ZNF605Q86T29 641 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 PAQR7Q86WK9 346 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 UBE2J2Q8N2K1 259 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 ESX1Q8N693 406 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 PDPRQ8NCN5 879 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 ZMIZ2Q8NF64 920 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 OR56A4Q8NGH8 313 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 ZNF384Q8TF68 577 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 MAFIPQ8WZ33 124 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 RNF121Q9H920 327 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 XPR1Q9UBH6 696 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 AMACRQ9UHK6 382 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 MKLN1Q9UL63 735 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 IRAK3Q9Y616 596 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 PHF2O75151 1096 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 TRIM3O75382 744 aaPredicted RBP7.16□□□□□ -1.26
SCN9A-202ENST00000409435 NADKO95544 446 aaPredicted RBP7.16□□□□□ -1.26
SCN9A-202ENST00000409435 CST3P01034 146 aaPredicted RBP7.16□□□□□ -1.26
SCN9A-202ENST00000409435 THRBP10828 461 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 ADSSP30520 456 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 ARL3P36405 182 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 GABREP78334 506 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 ZNF613Q6PF04 617 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 C12orf56Q8IXR9 622 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 C8orf59Q8N0T1 100 aaPredicted RBP7.16□□□□□ -1.26
SCN9A-202ENST00000409435 OR6Y1Q8NGX8 325 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 AZIN2Q96A70 460 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 MED28Q9H204 178 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 SERINC1Q9NRX5 453 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 MMP17Q9ULZ9 603 aa7.16□□□□□ -1.26
SCN9A-202ENST00000409435 PTRH2Q9Y3E5 179 aaKnown RBP7.16□□□□□ -1.26
SCN9A-202ENST00000409435 KDM4BO94953 1096 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms