RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 ATP4BP51164 291 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 ATP12AP54707 1039 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 VEPH1Q14D04 833 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 PAN2Q504Q3 1202 aaKnown RBP9.13□□□□□ -0.95
COL28A1-201ENST00000399429 MSANTD2Q6P1R3 559 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 LIX1Q8N485 282 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 PYURFQ96I23 114 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 GPR21Q99679 349 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 BCL7BQ9BQE9 202 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 CLPBQ9H078 707 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 ENOPH1Q9UHY7 261 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 NCKAP1Q9Y2A7 1128 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 MMP10P09238 476 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 ALDOCP09972 364 aaKnown RBP9.13□□□□□ -0.95
COL28A1-201ENST00000399429 HOXB8P17481 243 aaPredicted RBP9.13□□□□□ -0.95
COL28A1-201ENST00000399429 DDCP20711 480 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 GP2P55259 537 aaKnown RBP9.13□□□□□ -0.95
COL28A1-201ENST00000399429 ADARB1P78563 741 aaKnown RBP9.13□□□□□ -0.95
COL28A1-201ENST00000399429 HSF2Q03933 536 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 GALNT3Q14435 633 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 ESCO2Q56NI9 601 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 SYPL2Q5VXT5 272 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 DCLRE1AQ6PJP8 1040 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 ABHD15Q6UXT9 468 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 SIAH1Q8IUQ4 282 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 FAM9CQ8IZT9 166 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 GLB1L3Q8NCI6 653 aaPredicted RBP9.13□□□□□ -0.95
COL28A1-201ENST00000399429 C18orf25Q96B23 403 aaPredicted RBP9.13□□□□□ -0.95
COL28A1-201ENST00000399429 MGLLQ99685 303 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 CCDC32Q9BV29 185 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 RNF121Q9H920 327 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 ACOT13Q9NPJ3 140 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 C11orf16Q9NQ32 467 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 GPR83Q9NYM4 423 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 PTGFRNQ9P2B2 879 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 NUP50Q9UKX7 468 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 CMAHPQ9Y471 501 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 SMLR1H3BR10 107 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 POLR1CO15160 346 aaPredicted RBP9.13□□□□□ -0.95
COL28A1-201ENST00000399429 TLR5O60602 858 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 OTCP00480 354 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 CKMT1AP12532 417 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 TM4SF1P30408 202 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 FEN1P39748 380 aaKnown RBP9.13□□□□□ -0.95
COL28A1-201ENST00000399429 MAP2K3P46734 347 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 CASP9P55211 416 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 FOXA1P55317 472 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 CSTF1Q05048 431 aaKnown RBP9.13□□□□□ -0.95
COL28A1-201ENST00000399429 KIF1AQ12756 1690 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 HNRNPA0Q13151 305 aaKnown RBP9.13□□□□□ -0.95
COL28A1-201ENST00000399429 DCAF4L1Q3SXM0 396 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 UNC50Q53HI1 259 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 PRAMEF18Q5VWM3 479 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 ANKRD54Q6NXT1 300 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 PRSS48Q7RTY5 328 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 FGD2Q7Z6J4 655 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 NLGN1Q8N2Q7 840 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 PAPD5Q8NDF8 572 aaKnown RBP9.13□□□□□ -0.95
COL28A1-201ENST00000399429 ADGRE3Q9BY15 652 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 IPPKQ9H8X2 491 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 BPIFA1Q9NP55 256 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 NMRK2Q9NPI5 230 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 THUMPD1Q9NXG2 353 aaKnown RBP9.13□□□□□ -0.95
COL28A1-201ENST00000399429 RIMKLBQ9ULI2 386 aa9.13□□□□□ -0.95
COL28A1-201ENST00000399429 WWP2O00308 870 aa9.12□□□□□ -0.95
COL28A1-201ENST00000399429 DLGAP1O14490 977 aa9.12□□□□□ -0.95
COL28A1-201ENST00000399429 ZNF197O14709 1029 aa9.12□□□□□ -0.95
COL28A1-201ENST00000399429 OR10H3O60404 316 aa9.12□□□□□ -0.95
COL28A1-201ENST00000399429 APOC3P02656 99 aa9.12□□□□□ -0.95
COL28A1-201ENST00000399429 TP53P04637 393 aaPredicted RBP9.12□□□□□ -0.95
COL28A1-201ENST00000399429 PKLRP30613 574 aa9.12□□□□□ -0.95
COL28A1-201ENST00000399429 SPANXN4Q5MJ08 99 aa9.12□□□□□ -0.95
COL28A1-201ENST00000399429 LRRC66Q68CR7 880 aa9.12□□□□□ -0.95
COL28A1-201ENST00000399429 SH3BP5LQ7L8J4 393 aa9.12□□□□□ -0.95
COL28A1-201ENST00000399429 GLT6D1Q7Z4J2 308 aa9.12□□□□□ -0.95
COL28A1-201ENST00000399429 GALNT10Q86SR1 603 aa9.12□□□□□ -0.95
COL28A1-201ENST00000399429 LAPTM4BQ86VI4 370 aa9.12□□□□□ -0.95
COL28A1-201ENST00000399429 OR4L1Q8NH43 312 aa9.12□□□□□ -0.95
COL28A1-201ENST00000399429 PTCD2Q8WV60 388 aaKnown RBP9.12□□□□□ -0.95
COL28A1-201ENST00000399429 GSDMCQ9BYG8 508 aa9.12□□□□□ -0.95
COL28A1-201ENST00000399429 STARD7Q9NQZ5 370 aa9.12□□□□□ -0.95
COL28A1-201ENST00000399429 GLTPQ9NZD2 209 aa9.12□□□□□ -0.95
COL28A1-201ENST00000399429 TNPO3Q9Y5L0 923 aaKnown RBP9.12□□□□□ -0.95
COL28A1-201ENST00000399429 MTRF1O75570 445 aaKnown RBP9.12□□□□□ -0.95
COL28A1-201ENST00000399429 NAT2P11245 290 aa9.12□□□□□ -0.95
COL28A1-201ENST00000399429 TNFSF8P32971 234 aa9.12□□□□□ -0.95
COL28A1-201ENST00000399429 ARL2P36404 184 aa9.12□□□□□ -0.95
COL28A1-201ENST00000399429 PTGR1Q14914 329 aa9.12□□□□□ -0.95
COL28A1-201ENST00000399429 PAQR3Q6TCH7 311 aa9.12□□□□□ -0.95
COL28A1-201ENST00000399429 LARP4Q71RC2 724 aaKnown RBP eCLIP9.12□□□□□ -0.95
COL28A1-201ENST00000399429 LACC1Q8IV20 430 aa9.12□□□□□ -0.95
COL28A1-201ENST00000399429 VWA5B2Q8N398 1253 aa9.12□□□□□ -0.95
COL28A1-201ENST00000399429 ERMAPQ96PL5 475 aaPredicted RBP9.12□□□□□ -0.95
COL28A1-201ENST00000399429 GINS4Q9BRT9 223 aa9.12□□□□□ -0.95
COL28A1-201ENST00000399429 TBC1D17Q9HA65 648 aa9.12□□□□□ -0.95
COL28A1-201ENST00000399429 LRTM1Q9HBL6 345 aa9.12□□□□□ -0.95
COL28A1-201ENST00000399429 USP21Q9UK80 565 aa9.12□□□□□ -0.95
COL28A1-201ENST00000399429 MGAT4AQ9UM21 535 aa9.12□□□□□ -0.95
COL28A1-201ENST00000399429 PLCL2Q9UPR0 1127 aa9.12□□□□□ -0.95
COL28A1-201ENST00000399429 TNFSF13BQ9Y275 285 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms