RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 OR4F21O95013 312 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 SRPRAP08240 638 aaKnown RBP12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 PSKH1P11801 424 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 HCAR3P49019 387 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 PPM1JQ5JR12 505 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 LDB1Q86U70 411 aaPredicted RBP12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 PPP1R14BQ96C90 147 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 POLR3BQ9NW08 1133 aaPredicted RBP12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 EIF2B4Q9UI10 523 aaKnown RBP12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 ZNF99A8MXY4 864 aaPredicted RBP12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 SLC33A1O00400 549 aaPredicted RBP12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 CLPXO76031 633 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 POU2F1P14859 743 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 NMBRP28336 390 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 IDH3AP50213 366 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 CHAF1BQ13112 559 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 SCARB2Q14108 478 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 TREML2Q5T2D2 321 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 SLAIN1Q8ND83 568 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 CHIAQ9BZP6 476 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 KAT8Q9H7Z6 458 aaKnown RBP12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 SMURF1Q9HCE7 757 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 SLC38A8A6NNN8 435 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 RPS14P62263 151 aaKnown RBP12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 OCLNQ16625 522 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 ARSJQ5FYB0 599 aaPredicted RBP12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 PROKR2Q8NFJ6 384 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 COPS4Q9BT78 406 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 SDCBP2Q9H190 292 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 GOLGA2P5Q9HBQ8 144 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 TVP23BQ9NYZ1 205 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 CLCA3PQ9Y6N3 262 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 TEX13CA0A0J9YWL9 993 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 EFCAB9A8MZ26 197 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 CLDN25C9JDP6 229 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 OR4Q2P0C623 313 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 XKP51811 444 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 HFE2Q6ZVN8 426 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 NXPE1Q8N323 547 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 MPP5Q8N3R9 675 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 TRPM4Q8TD43 1214 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 DQX1Q8TE96 717 aaKnown RBP12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 EMID1Q96A84 441 aaPredicted RBP12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 DUSP26Q9BV47 211 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 PDZD7Q9H5P4 517 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 ENY2Q9NPA8 101 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 SDHAF3Q9NRP4 125 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 P2RX2Q9UBL9 471 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 PADI3Q9ULW8 664 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 FAM234BA2RU67 622 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 ARL5CA6NH57 179 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 SLC6A9P48067 706 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 FLT3LGP49771 235 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 ARFRP1Q13795 201 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 RASGRP3Q8IV61 690 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 ALG5Q9Y673 324 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 BCL9O00512 1426 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 HOXA10P31260 410 aaPredicted RBP12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 PTP4A2Q12974 167 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 TOR1AIP1Q5JTV8 583 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 TMEM164Q5U3C3 297 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 SLC25A25Q6KCM7 469 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 IL31RAQ8NI17 732 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 NDRG1Q92597 394 aaKnown RBP12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 NEURL4Q96JN8 1562 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 DNAJB9Q9UBS3 223 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 GLS2Q9UI32 602 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 WASF3Q9UPY6 502 aa12.56□□□□□ -0.4
CCDC88C-204ENST00000389857 GIMAP1-GIMAP5A0A087WTJ2 511 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 RCCD1A6NED2 376 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 ADAM17P78536 824 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 PRKCDQ05655 676 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 ENPP2Q13822 863 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 PDSS1Q5T2R2 415 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 RAB11FIP2Q7L804 512 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 RAB2BQ8WUD1 216 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 ING5Q8WYH8 240 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 RGMAQ96B86 450 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 DPYSL5Q9BPU6 564 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 SCDO00767 359 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 COQ9O75208 318 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 EOMESO95936 686 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 TNFP01375 233 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 FSTL4Q6MZW2 842 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 CEP97Q8IW35 865 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 ZC3H10Q96K80 434 aaKnown RBP12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 EPYCQ99645 322 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 MIPEPQ99797 713 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 ZNF471Q9BX82 626 aaPredicted RBP12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 HMGN1P05114 100 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 NDUFS1P28331 727 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 CBLBQ13191 982 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 FAM174BQ3ZCQ3 159 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 RBM48Q5RL73 367 aaKnown RBP12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 PRPF38BQ5VTL8 546 aaKnown RBP12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 PAOXQ6QHF9 649 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 ADGRD2Q7Z7M1 963 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 SLC13A3Q8WWT9 602 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 CPT1BQ92523 772 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 SLC22A4Q9H015 551 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms