RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 PROSER1Q86XN7 944 aa13.06□□□□□ -0.32
CCDC3-202ENST00000378839 TBC1D21Q8IYX1 336 aa13.06□□□□□ -0.32
CCDC3-202ENST00000378839 HS3ST5Q8IZT8 346 aa13.06□□□□□ -0.32
CCDC3-202ENST00000378839 ZSWIM3Q96MP5 696 aa13.06□□□□□ -0.32
CCDC3-202ENST00000378839 TBCDQ9BTW9 1192 aa13.06□□□□□ -0.32
CCDC3-202ENST00000378839 CPEB1Q9BZB8 566 aaKnown RBP13.06□□□□□ -0.32
CCDC3-202ENST00000378839 CRISPLD2Q9H0B8 497 aa13.06□□□□□ -0.32
CCDC3-202ENST00000378839 CHCHD3Q9NX63 227 aaKnown RBP13.06□□□□□ -0.32
CCDC3-202ENST00000378839 NDUFA13Q9P0J0 144 aa13.06□□□□□ -0.32
CCDC3-202ENST00000378839 CIDEBQ9UHD4 219 aa13.06□□□□□ -0.32
CCDC3-202ENST00000378839 ERVK-11Q9UQG0 969 aa13.06□□□□□ -0.32
CCDC3-202ENST00000378839 ZNF510Q9Y2H8 683 aa13.06□□□□□ -0.32
CCDC3-202ENST00000378839 HELZP42694 1942 aaKnown RBP13.05□□□□□ -0.32
CCDC3-202ENST00000378839 CROCCQ5TZA2 2017 aa13.05□□□□□ -0.32
CCDC3-202ENST00000378839 XIRP2A4UGR9 3374 aa13.05□□□□□ -0.32
CCDC3-202ENST00000378839 SLC28A1O00337 649 aa13.05□□□□□ -0.32
CCDC3-202ENST00000378839 CTSLP07711 333 aa13.05□□□□□ -0.32
CCDC3-202ENST00000378839 CDH1P12830 882 aa13.05□□□□□ -0.32
CCDC3-202ENST00000378839 HOXB9P17482 250 aaPredicted RBP13.05□□□□□ -0.32
CCDC3-202ENST00000378839 PTPN6P29350 595 aa13.05□□□□□ -0.32
CCDC3-202ENST00000378839 MAGEA10P43363 369 aaPredicted RBP13.05□□□□□ -0.32
CCDC3-202ENST00000378839 SLC6A12P48065 614 aa13.05□□□□□ -0.32
CCDC3-202ENST00000378839 SLC14A1Q13336 389 aa13.05□□□□□ -0.32
CCDC3-202ENST00000378839 RNF165Q6ZSG1 346 aa13.05□□□□□ -0.32
CCDC3-202ENST00000378839 ANKRD46Q86W74 232 aa13.05□□□□□ -0.32
CCDC3-202ENST00000378839 PLPP6Q8IY26 295 aa13.05□□□□□ -0.32
CCDC3-202ENST00000378839 ZNF786Q8N393 782 aa13.05□□□□□ -0.32
CCDC3-202ENST00000378839 LILRA3Q8N6C8 439 aaPredicted RBP13.05□□□□□ -0.32
CCDC3-202ENST00000378839 OR8J3Q8NGG0 315 aa13.05□□□□□ -0.32
CCDC3-202ENST00000378839 CYB5D2Q8WUJ1 264 aa13.05□□□□□ -0.32
CCDC3-202ENST00000378839 FIG4Q92562 907 aa13.05□□□□□ -0.32
CCDC3-202ENST00000378839 APIPQ96GX9 242 aa13.05□□□□□ -0.32
CCDC3-202ENST00000378839 NSMCE2Q96MF7 247 aa13.05□□□□□ -0.32
CCDC3-202ENST00000378839 PAIP1Q9H074 479 aaKnown RBP13.05□□□□□ -0.32
CCDC3-202ENST00000378839 CLK4Q9HAZ1 481 aaKnown RBP13.05□□□□□ -0.32
CCDC3-202ENST00000378839 DMTF1Q9Y222 760 aa13.05□□□□□ -0.32
CCDC3-202ENST00000378839 PCDHB14Q9Y5E9 798 aa13.05□□□□□ -0.32
CCDC3-202ENST00000378839 PCDHGA11Q9Y5H2 935 aa13.05□□□□□ -0.32
CCDC3-202ENST00000378839 CHD9Q3L8U1 2897 aa13.05□□□□□ -0.32
CCDC3-202ENST00000378839 NOTCH4Q99466 2003 aa13.05□□□□□ -0.32
CCDC3-202ENST00000378839 PRSS23O95084 383 aa13.05□□□□□ -0.32
CCDC3-202ENST00000378839 KCNH1O95259 989 aa13.05□□□□□ -0.32
CCDC3-202ENST00000378839 CLDN9O95484 217 aa13.05□□□□□ -0.32
CCDC3-202ENST00000378839 LDLRP01130 860 aa13.05□□□□□ -0.32
CCDC3-202ENST00000378839 GSNP06396 782 aa13.05□□□□□ -0.32
CCDC3-202ENST00000378839 UMPSP11172 480 aa13.05□□□□□ -0.32
CCDC3-202ENST00000378839 CD22P20273 847 aa13.05□□□□□ -0.32
CCDC3-202ENST00000378839 RPS9P46781 194 aaKnown RBP13.05□□□□□ -0.32
CCDC3-202ENST00000378839 YAP1P46937 504 aaKnown RBP13.05□□□□□ -0.32
CCDC3-202ENST00000378839 GZMMP51124 257 aa13.05□□□□□ -0.32
CCDC3-202ENST00000378839 ADARB1P78563 741 aaKnown RBP13.05□□□□□ -0.32
CCDC3-202ENST00000378839 CYP4F3Q08477 520 aa13.05□□□□□ -0.32
CCDC3-202ENST00000378839 PLCL1Q15111 1095 aa13.05□□□□□ -0.32
CCDC3-202ENST00000378839 SF1Q15637 639 aaKnown RBP13.05□□□□□ -0.32
CCDC3-202ENST00000378839 PTCHD3Q3KNS1 767 aa13.05□□□□□ -0.32
CCDC3-202ENST00000378839 POM121L1PQ3SYA9 428 aa13.05□□□□□ -0.32
CCDC3-202ENST00000378839 RUNDC3AQ59EK9 446 aa13.05□□□□□ -0.32
CCDC3-202ENST00000378839 OTUD3Q5T2D3 398 aaPredicted RBP13.05□□□□□ -0.32
CCDC3-202ENST00000378839 C1orf53Q5VUE5 145 aa13.05□□□□□ -0.32
CCDC3-202ENST00000378839 USP51Q70EK9 711 aa13.05□□□□□ -0.32
CCDC3-202ENST00000378839 NAT16Q8N8M0 369 aa13.05□□□□□ -0.32
CCDC3-202ENST00000378839 ERLEC1Q96DZ1 483 aa13.05□□□□□ -0.32
CCDC3-202ENST00000378839 SLC12A9Q9BXP2 914 aa13.05□□□□□ -0.32
CCDC3-202ENST00000378839 DPY30Q9C005 99 aa13.05□□□□□ -0.32
CCDC3-202ENST00000378839 SLC32A1Q9H598 525 aa13.05□□□□□ -0.32
CCDC3-202ENST00000378839 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.05□□□□□ -0.32
CCDC3-202ENST00000378839 EIF3LQ9Y262 564 aaKnown RBP13.05□□□□□ -0.32
CCDC3-202ENST00000378839 SLC22A14Q9Y267 594 aa13.05□□□□□ -0.32
CCDC3-202ENST00000378839 TRIM64CA6NLI5 447 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 FADS2P1A8MWK0 482 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 TTC34A8MYJ7 566 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 ITPKAP23677 461 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 ETV3P41162 512 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 NTHL1P78549 312 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 PPP1R8Q12972 351 aaKnown RBP13.04□□□□□ -0.32
CCDC3-202ENST00000378839 BOP1Q14137 746 aaKnown RBP13.04□□□□□ -0.32
CCDC3-202ENST00000378839 MAPKAPK3Q16644 382 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 ZIK1Q3SY52 487 aaPredicted RBP13.04□□□□□ -0.32
CCDC3-202ENST00000378839 BORAQ6PGQ7 559 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 CHST15Q7LFX5 561 aaPredicted RBP13.04□□□□□ -0.32
CCDC3-202ENST00000378839 OR10Q1Q8NGQ4 319 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 ATG10Q9H0Y0 220 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 ACTR8Q9H981 624 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 C1orf109Q9NX04 203 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 PTTG2Q9NZH5 202 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 FADS3Q9Y5Q0 445 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 REV3LO60673 3130 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 KANSL1LA0AUZ9 987 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 DYTNA2CJ06 578 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 CLOCKO15516 846 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 WDR47O94967 919 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 POP4O95707 220 aaKnown RBP13.04□□□□□ -0.32
CCDC3-202ENST00000378839 ANXA5P08758 320 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 NFKBIAP25963 317 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 B3GNT6Q6ZMB0 384 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 Q6ZVL8 140 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 OR2T12Q8NG77 320 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 FBXO30Q8TB52 745 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 FRS2Q8WU20 508 aa13.04□□□□□ -0.32
CCDC3-202ENST00000378839 TMBIM1Q969X1 311 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 177 ms