RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 FAM129AQ9BZQ8 928 aa1.98□□□□□ -2.09
VPS13A-206ENST00000376646 GPR88Q9GZN0 384 aa1.98□□□□□ -2.09
VPS13A-206ENST00000376646 ST6GALNAC4Q9H4F1 302 aa1.98□□□□□ -2.09
VPS13A-206ENST00000376646 OPA3Q9H6K4 179 aa1.98□□□□□ -2.09
VPS13A-206ENST00000376646 ZBTB20Q9HC78 741 aaPredicted RBP1.98□□□□□ -2.09
VPS13A-206ENST00000376646 SH3GLB2Q9NR46 395 aa1.98□□□□□ -2.09
VPS13A-206ENST00000376646 CCL27Q9Y4X3 112 aa1.98□□□□□ -2.09
VPS13A-206ENST00000376646 TMEM184BQ9Y519 407 aaPredicted RBP1.98□□□□□ -2.09
VPS13A-206ENST00000376646 ANKRD66B4E2M5 251 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 ZNF197O14709 1029 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 TO15178 435 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 IPO8O15397 1037 aaKnown RBP1.97□□□□□ -2.09
VPS13A-206ENST00000376646 SLCO2B1O94956 709 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 NADKO95544 446 aaPredicted RBP1.97□□□□□ -2.09
VPS13A-206ENST00000376646 C22orf31O95567 290 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 TRUB2O95900 331 aaKnown RBP1.97□□□□□ -2.09
VPS13A-206ENST00000376646 PFKFB1P16118 471 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 SP100P23497 879 aaPredicted RBP1.97□□□□□ -2.09
VPS13A-206ENST00000376646 NR2C2P49116 596 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 CSE1LP55060 971 aaKnown RBP1.97□□□□□ -2.09
VPS13A-206ENST00000376646 POU5F1Q01860 360 aaKnown RBP1.97□□□□□ -2.09
VPS13A-206ENST00000376646 RALGDSQ12967 914 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 ITGA9Q13797 1035 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 MELKQ14680 651 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 KRBOX4Q5JUW0 171 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 FIGLAQ6QHK4 219 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 STXBP4Q6ZWJ1 553 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 SLFN11Q7Z7L1 901 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 IQCHQ86VS3 1027 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 TMEM173Q86WV6 379 aaPredicted RBP1.97□□□□□ -2.09
VPS13A-206ENST00000376646 AFAP1Q8N556 730 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 SLC4A11Q8NBS3 891 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 TSPAN14Q8NG11 270 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 OR10S1Q8NGN2 331 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 OR2T6Q8NHC8 308 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 OLIG1Q8TAK6 271 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 OLFM1Q99784 485 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 WDR13Q9H1Z4 485 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 ERVMER34-1Q9H9K5 563 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 ZNF71Q9NQZ8 489 aaPredicted RBP1.97□□□□□ -2.09
VPS13A-206ENST00000376646 RCC2Q9P258 522 aaKnown RBP1.97□□□□□ -2.09
VPS13A-206ENST00000376646 EDDM13A0A1B0GTR0 161 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 OR2M5A3KFT3 312 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 HEPACAM2A8MVW5 462 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 XRCC3O43542 346 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 SSX4O60224 188 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 TRMUO75648 421 aaKnown RBP1.97□□□□□ -2.09
VPS13A-206ENST00000376646 CCDC175P0C221 793 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 ZNF41P51814 821 aaPredicted RBP1.97□□□□□ -2.09
VPS13A-206ENST00000376646 CTSCP53634 463 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 ROR1Q01973 937 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 ENPP2Q13822 863 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 COG2Q14746 738 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 ALDH1L2Q3SY69 923 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 GTDC1Q4AE62 458 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 CCDC184Q52MB2 194 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 XKR6Q5GH73 641 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 ADAMTSL4-AS1Q5T5F5 129 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 CST9LP1Q5W188 147 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 IL27RAQ6UWB1 636 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 SUSD1Q6UWL2 747 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 CHST3Q7LGC8 479 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 FAM9BQ8IZU0 186 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 RDM1Q8NG50 284 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 PPP4R1Q8TF05 950 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 SPACA9Q96E40 222 aaPredicted RBP1.97□□□□□ -2.09
VPS13A-206ENST00000376646 SIPA1Q96FS4 1042 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 POM121L2Q96KW2 1035 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 FAM81BQ96LP2 452 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 ZNF582Q96NG8 517 aaPredicted RBP1.97□□□□□ -2.09
VPS13A-206ENST00000376646 NEK1Q96PY6 1258 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 OR6C1Q96RD1 312 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 SLC22A12Q96S37 553 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 IWS1Q96ST2 819 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 OPRPNQ99935 248 aaPredicted RBP1.97□□□□□ -2.09
VPS13A-206ENST00000376646 PYGO2Q9BRQ0 406 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 C16orf70Q9BSU1 422 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 CNOT10Q9H9A5 744 aaKnown RBP1.97□□□□□ -2.09
VPS13A-206ENST00000376646 TBC1D17Q9HA65 648 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 RPS10P5Q9NQ39 176 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 RHCGQ9UBD6 479 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 DDX25Q9UHL0 483 aaKnown RBP1.97□□□□□ -2.09
VPS13A-206ENST00000376646 OSGIN1Q9UJX0 560 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 YIPF1Q9Y548 306 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 RNF215Q9Y6U7 377 aa1.97□□□□□ -2.09
VPS13A-206ENST00000376646 ASTN2O75129 1339 aaPredicted RBP1.96□□□□□ -2.1
VPS13A-206ENST00000376646 ZNF541Q9H0D2 1346 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 COL2A1P02458 1487 aaPredicted RBP1.96□□□□□ -2.1
VPS13A-206ENST00000376646 NDUFAF8A1L188 74 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 TOMM70O94826 608 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 CELF2O95319 508 aaKnown RBP1.96□□□□□ -2.1
VPS13A-206ENST00000376646 ACP2P11117 423 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 DPEP1P16444 411 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 CKMT2P17540 419 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 CDH11P55287 796 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 PPARDQ03181 441 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 PLA2G7Q13093 441 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 TNIP1Q15025 636 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 ASPRV1Q53RT3 343 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 ARHGEF16Q5VV41 709 aa1.96□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms